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The map label for this gene is dppB [C]

Identifier: 213691727

GI number: 213691727

Start: 979207

End: 980208

Strand: Direct

Name: dppB [C]

Synonym: Blon_0833

Alternate gene names: 213691727

Gene position: 979207-980208 (Clockwise)

Preceding gene: 213691726

Following gene: 213691728

Centisome position: 34.57

GC content: 65.87

Gene sequence:

>1002_bases
ATGAGAATCCTGCAATACATCGGCAAGCGCGTGGCGAGCTCGATCGTCGTCATCCTGCTCATCACGCTGGCGCTGTTCCT
GATCTTCTTCCTGCTGCCGACCAATCCGGCGCAGCTGTCGTGCGGCAAGCCGTGCACGCCCGAGCAGCTGCAGCGGGTCT
CCGCCTTCATGGGCACCGACAAGCCGTGGTACGAGCAGATGGGCAATTACGTGGCGGGCATCTTCGTCGGGCGCACCTTC
GGCAGCGGCGGCGGCGCCGTGGTCTGCTCGGCGCCATGCCTCGGGTATTCGTTCCGTCTCAACGAATCGGTGAGCCAGCT
GATCCTCGACCGCTTCCCGATCACCGCGTCGATCGCGGTCGGCGCGGCCGTGCTGTGGCTGGTCATCGGCGTGGCGACCG
GCGTGTGGGCGGCCCTCAAGCGCGATACGCTGATCGACCGCACGCTGCTCGGGCTGTCGATCGTGGGCGTTTCGGCACCG
TCATACCTGATCGGCCTGCTGACGGTGATCGCCTTTTCGCTGGTGCTGCAGATATTCCCCAGCGGCGGGTACGTGAACTT
CCACGACGACCCTGTCGGCTGGTTCACGCATCTGCTGCTGCCGTGGCTGGTGCTGGCCGTGCTCAGCGCCGCCGGCTACA
CCAGGGTCACCCGCACGCAGATGATCGGCGAGCTGAGCCAGGACTATATCCGCACCGCCCGCTCCAAGGGCGTGCCCGAA
TCGGTGATCGTCTTCAAGCACGCGCTGCGCAACGCGCTGCTGCCCGTGATGACCATGTTCGGCCTCGATCTGGGCGGGCT
GCTCGGCGGCGCGGTGCTCACCGAGAAGGTGTTCTCGATGCAGGGGCTCGGCTCGCTGCTGCTCGATTCCGTGTCGAACC
TCGACCTGCAGGTGCTGGTCGGCGCGACGATATTCGCCGCCGTACTGGTCATCGTCGCCAACCTGATCGTGGACATCTGC
TACAGCCTGCTCGACCCCAGGGTCGCGCTCGGCACGAAGTAG

Upstream 100 bases:

>100_bases
TGATCTTCCCGGGCGCCGCCCTGTTCCTGCTGACCTTCGGCTTCAACCTGCTTGGCGATGGCCTGAGCGACGCCATCGAC
CCGCGCAAGGGGGTGCGTGC

Downstream 100 bases:

>100_bases
TGCGGCTGCGGCCGCAACACGCGATACTTGCCGGTCTGCTCCACGGACCGGCACCGATAGAGAGGAAAACCATCATGAAG
AACAACGCATGGCGCGTATT

Product: binding-protein-dependent transport systems inner membrane component

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 333

Protein sequence:

>333_residues
MRILQYIGKRVASSIVVILLITLALFLIFFLLPTNPAQLSCGKPCTPEQLQRVSAFMGTDKPWYEQMGNYVAGIFVGRTF
GSGGGAVVCSAPCLGYSFRLNESVSQLILDRFPITASIAVGAAVLWLVIGVATGVWAALKRDTLIDRTLLGLSIVGVSAP
SYLIGLLTVIAFSLVLQIFPSGGYVNFHDDPVGWFTHLLLPWLVLAVLSAAGYTRVTRTQMIGELSQDYIRTARSKGVPE
SVIVFKHALRNALLPVMTMFGLDLGGLLGGAVLTEKVFSMQGLGSLLLDSVSNLDLQVLVGATIFAAVLVIVANLIVDIC
YSLLDPRVALGTK

Sequences:

>Translated_333_residues
MRILQYIGKRVASSIVVILLITLALFLIFFLLPTNPAQLSCGKPCTPEQLQRVSAFMGTDKPWYEQMGNYVAGIFVGRTF
GSGGGAVVCSAPCLGYSFRLNESVSQLILDRFPITASIAVGAAVLWLVIGVATGVWAALKRDTLIDRTLLGLSIVGVSAP
SYLIGLLTVIAFSLVLQIFPSGGYVNFHDDPVGWFTHLLLPWLVLAVLSAAGYTRVTRTQMIGELSQDYIRTARSKGVPE
SVIVFKHALRNALLPVMTMFGLDLGGLLGGAVLTEKVFSMQGLGSLLLDSVSNLDLQVLVGATIFAAVLVIVANLIVDIC
YSLLDPRVALGTK
>Mature_333_residues
MRILQYIGKRVASSIVVILLITLALFLIFFLLPTNPAQLSCGKPCTPEQLQRVSAFMGTDKPWYEQMGNYVAGIFVGRTF
GSGGGAVVCSAPCLGYSFRLNESVSQLILDRFPITASIAVGAAVLWLVIGVATGVWAALKRDTLIDRTLLGLSIVGVSAP
SYLIGLLTVIAFSLVLQIFPSGGYVNFHDDPVGWFTHLLLPWLVLAVLSAAGYTRVTRTQMIGELSQDYIRTARSKGVPE
SVIVFKHALRNALLPVMTMFGLDLGGLLGGAVLTEKVFSMQGLGSLLLDSVSNLDLQVLVGATIFAAVLVIVANLIVDIC
YSLLDPRVALGTK

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=350, Percent_Identity=32.8571428571429, Blast_Score=182, Evalue=2e-47,
Organism=Escherichia coli, GI1787053, Length=326, Percent_Identity=33.1288343558282, Blast_Score=181, Evalue=6e-47,
Organism=Escherichia coli, GI1787497, Length=333, Percent_Identity=30.9309309309309, Blast_Score=162, Evalue=2e-41,
Organism=Escherichia coli, GI1789888, Length=330, Percent_Identity=31.8181818181818, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1787761, Length=344, Percent_Identity=32.8488372093023, Blast_Score=147, Evalue=6e-37,
Organism=Escherichia coli, GI1788504, Length=306, Percent_Identity=25.8169934640523, Blast_Score=108, Evalue=6e-25,
Organism=Escherichia coli, GI1787550, Length=248, Percent_Identity=25.8064516129032, Blast_Score=96, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 35649; Mature: 35649

Theoretical pI: Translated: 8.70; Mature: 8.70

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRILQYIGKRVASSIVVILLITLALFLIFFLLPTNPAQLSCGKPCTPEQLQRVSAFMGTD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCC
KPWYEQMGNYVAGIFVGRTFGSGGGAVVCSAPCLGYSFRLNESVSQLILDRFPITASIAV
CHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCEEEHHHHHHHHHHHHCCCHHHHHH
GAAVLWLVIGVATGVWAALKRDTLIDRTLLGLSIVGVSAPSYLIGLLTVIAFSLVLQIFP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
SGGYVNFHDDPVGWFTHLLLPWLVLAVLSAAGYTRVTRTQMIGELSQDYIRTARSKGVPE
CCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCH
SVIVFKHALRNALLPVMTMFGLDLGGLLGGAVLTEKVFSMQGLGSLLLDSVSNLDLQVLV
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
GATIFAAVLVIVANLIVDICYSLLDPRVALGTK
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCC
>Mature Secondary Structure
MRILQYIGKRVASSIVVILLITLALFLIFFLLPTNPAQLSCGKPCTPEQLQRVSAFMGTD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCC
KPWYEQMGNYVAGIFVGRTFGSGGGAVVCSAPCLGYSFRLNESVSQLILDRFPITASIAV
CHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCEEEHHHHHHHHHHHHCCCHHHHHH
GAAVLWLVIGVATGVWAALKRDTLIDRTLLGLSIVGVSAPSYLIGLLTVIAFSLVLQIFP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
SGGYVNFHDDPVGWFTHLLLPWLVLAVLSAAGYTRVTRTQMIGELSQDYIRTARSKGVPE
CCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCH
SVIVFKHALRNALLPVMTMFGLDLGGLLGGAVLTEKVFSMQGLGSLLLDSVSNLDLQVLV
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
GATIFAAVLVIVANLIVDICYSLLDPRVALGTK
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11756688 [H]