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The map label for this gene is ddpA [H]

Identifier: 213691728

GI number: 213691728

Start: 980283

End: 981950

Strand: Direct

Name: ddpA [H]

Synonym: Blon_0834

Alternate gene names: 213691728

Gene position: 980283-981950 (Clockwise)

Preceding gene: 213691727

Following gene: 213691729

Centisome position: 34.61

GC content: 65.05

Gene sequence:

>1668_bases
ATGAAGAACAACGCATGGCGCGTATTCGCGGCGGGGGCTTGTGCCGCGGTACTGGCGCTGTCCGGCTGCGGCGCGTCCAA
CGACAACGCCGCCACCGGCTCGGCGAGCGGCACCACCGTCAAGGGCGGCACGCTGAACGTGCTGCTGTCCAGCACGGAGA
TGGATCTGGACCCGGCCAAGAGCCAGGGTCTGCCGACCACCACGAACGGCAACATCTTCCGCCGCCTGACCGCGTGGAAG
ATCACCGACAAGGGCGAGACGAAGGTCGTGCCCGATCTGGCCACCGACACCGGCAAGTCGAGCGACGACGGCAAGACGTG
GACGTACACGCTCAAGGACGGGCTCAAGTTCTCCGACGGCACGCCCATCACCTCCAAGGACGTCAAGTACGGGCTGGAGC
GTTCCTTCGCCGACTCGCTGACCGGCGGCCTGAGCTACCACAAGACGCTGCTCGAGGGCGCGCAGGGCTACCACGGCCCG
TTCGACGGCCAGGAGCTCAGCTCCATCGAGACGCCGAACGACAAGACCATCATCTTCCACCTCAACGCGCCGTTCGGCGA
CTGGCCGTGGGTCGTCTCGCTCGCCGCGTTCACCCCCGTGCCCGACGGCAAGGGCCCGGCGTCCGGCTACGGCAAGCTGC
CGGTGGCCTCCGGCCCGTACAAGGTCGAGTCGAACGAGGCTGGCAAGCAGGCCGTCTTCGTGCGCAACACCTACTGGGAC
AAGAAGACCGATCCGGTGCGCACCGCGGGCCCAGACAAGATCGTGTTCAAGATGGGACAGGACACCTCGGTGGCCGCCCA
GTCGATCATGCAGGGTACCGGTGAGGGCAAGAACTCGTTCCTGTCCGGATTCGTGCCGGCCGCGCAGCTCGCGCAGGCGC
AGGCCAACCCGAACTACAAGAAGCTGCTGACCACCAGCGGCGACGGCGCGCTGGAATACCTCGCCATCAACACCCAACAC
GTGAAGAACGCGAAGATTCGCCAAGCGCTGCAGTACGCGGTCGACAAGAAGGCCTACCAGACGGCTTCCGGCGGCGAGAT
CGCCGGCAACTTCGCCACCACGCTCATCACGCCCGGCATCGAGGGCCGCGAGGACTACGACCTGTACAAGGCCGATCCGA
CCGGCGACGTGGACAAGGCCAAGCAGCTGATCAAGGAGTCGGGCGAGCAGGCCCCGACCCTCAAGCTCATCGCCACCTCC
GCTCAGGCCGAAACCGCCTCCTCGATCCAGACGAGCCTCAAACGGGCCGGCGTCAAGGTGGACATCCAGACACTCAACGA
CGATGTGTATTCCGATACGCTGACCAACGACAAGGGCGACTACGATCTGGCCATCAGCTCGTGGCAGCCCGACTTCCCGT
CGCCCTACGCCAACATCTCCCCGCTGTTCGACTCCTCGCAGATCGGCCACGGCAACTACAACCTGGCCCGTTACGCGAAC
CCGAAGGTCGACGAGCTGATCAAGAAGGCCACCGAGACCATCGATCAGACCGAGGCCGGCAAGATCTGGGCCGAGGCCGA
CAAGACGATCATGGCCGACGCGCCGGTCGTGCCGCTGATCTATTCGAAGAACACGTTCATCCACGGATCGAACGTGACCA
ACTTCGTCATCGGCAACTTCCCGGCGTACCCGGACTACACGCAGGTCTCGCTCGCCAGCGCGAACTGA

Upstream 100 bases:

>100_bases
CCAGGGTCGCGCTCGGCACGAAGTAGTGCGGCTGCGGCCGCAACACGCGATACTTGCCGGTCTGCTCCACGGACCGGCAC
CGATAGAGAGGAAAACCATC

Downstream 100 bases:

>100_bases
GCCGGCATCCGCATCCGGCGCGCGCCGGCGGCATGGTCCGCTCGCGCGCGCCGGACGCATTCCAACGCTTGTGCATCCAA
GGAGCTTCCAATGAGTGAAC

Product: extracellular solute-binding protein, family 5

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 555; Mature: 555

Protein sequence:

>555_residues
MKNNAWRVFAAGACAAVLALSGCGASNDNAATGSASGTTVKGGTLNVLLSSTEMDLDPAKSQGLPTTTNGNIFRRLTAWK
ITDKGETKVVPDLATDTGKSSDDGKTWTYTLKDGLKFSDGTPITSKDVKYGLERSFADSLTGGLSYHKTLLEGAQGYHGP
FDGQELSSIETPNDKTIIFHLNAPFGDWPWVVSLAAFTPVPDGKGPASGYGKLPVASGPYKVESNEAGKQAVFVRNTYWD
KKTDPVRTAGPDKIVFKMGQDTSVAAQSIMQGTGEGKNSFLSGFVPAAQLAQAQANPNYKKLLTTSGDGALEYLAINTQH
VKNAKIRQALQYAVDKKAYQTASGGEIAGNFATTLITPGIEGREDYDLYKADPTGDVDKAKQLIKESGEQAPTLKLIATS
AQAETASSIQTSLKRAGVKVDIQTLNDDVYSDTLTNDKGDYDLAISSWQPDFPSPYANISPLFDSSQIGHGNYNLARYAN
PKVDELIKKATETIDQTEAGKIWAEADKTIMADAPVVPLIYSKNTFIHGSNVTNFVIGNFPAYPDYTQVSLASAN

Sequences:

>Translated_555_residues
MKNNAWRVFAAGACAAVLALSGCGASNDNAATGSASGTTVKGGTLNVLLSSTEMDLDPAKSQGLPTTTNGNIFRRLTAWK
ITDKGETKVVPDLATDTGKSSDDGKTWTYTLKDGLKFSDGTPITSKDVKYGLERSFADSLTGGLSYHKTLLEGAQGYHGP
FDGQELSSIETPNDKTIIFHLNAPFGDWPWVVSLAAFTPVPDGKGPASGYGKLPVASGPYKVESNEAGKQAVFVRNTYWD
KKTDPVRTAGPDKIVFKMGQDTSVAAQSIMQGTGEGKNSFLSGFVPAAQLAQAQANPNYKKLLTTSGDGALEYLAINTQH
VKNAKIRQALQYAVDKKAYQTASGGEIAGNFATTLITPGIEGREDYDLYKADPTGDVDKAKQLIKESGEQAPTLKLIATS
AQAETASSIQTSLKRAGVKVDIQTLNDDVYSDTLTNDKGDYDLAISSWQPDFPSPYANISPLFDSSQIGHGNYNLARYAN
PKVDELIKKATETIDQTEAGKIWAEADKTIMADAPVVPLIYSKNTFIHGSNVTNFVIGNFPAYPDYTQVSLASAN
>Mature_555_residues
MKNNAWRVFAAGACAAVLALSGCGASNDNAATGSASGTTVKGGTLNVLLSSTEMDLDPAKSQGLPTTTNGNIFRRLTAWK
ITDKGETKVVPDLATDTGKSSDDGKTWTYTLKDGLKFSDGTPITSKDVKYGLERSFADSLTGGLSYHKTLLEGAQGYHGP
FDGQELSSIETPNDKTIIFHLNAPFGDWPWVVSLAAFTPVPDGKGPASGYGKLPVASGPYKVESNEAGKQAVFVRNTYWD
KKTDPVRTAGPDKIVFKMGQDTSVAAQSIMQGTGEGKNSFLSGFVPAAQLAQAQANPNYKKLLTTSGDGALEYLAINTQH
VKNAKIRQALQYAVDKKAYQTASGGEIAGNFATTLITPGIEGREDYDLYKADPTGDVDKAKQLIKESGEQAPTLKLIATS
AQAETASSIQTSLKRAGVKVDIQTLNDDVYSDTLTNDKGDYDLAISSWQPDFPSPYANISPLFDSSQIGHGNYNLARYAN
PKVDELIKKATETIDQTEAGKIWAEADKTIMADAPVVPLIYSKNTFIHGSNVTNFVIGNFPAYPDYTQVSLASAN

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787762, Length=485, Percent_Identity=28.659793814433, Blast_Score=136, Evalue=5e-33,
Organism=Escherichia coli, GI1787052, Length=457, Percent_Identity=25.601750547046, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI87081878, Length=496, Percent_Identity=24.5967741935484, Blast_Score=97, Evalue=3e-21,
Organism=Escherichia coli, GI1789966, Length=478, Percent_Identity=25.3138075313808, Blast_Score=89, Evalue=9e-19,
Organism=Escherichia coli, GI1787551, Length=562, Percent_Identity=22.5978647686833, Blast_Score=71, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 59171; Mature: 59171

Theoretical pI: Translated: 5.36; Mature: 5.36

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNNAWRVFAAGACAAVLALSGCGASNDNAATGSASGTTVKGGTLNVLLSSTEMDLDPAK
CCCCCEEEEECHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCEEEEEEECCCCCCCCCC
SQGLPTTTNGNIFRRLTAWKITDKGETKVVPDLATDTGKSSDDGKTWTYTLKDGLKFSDG
CCCCCCCCCCCEEEEEEEEEECCCCCCEECCCCCCCCCCCCCCCCEEEEEECCCCEECCC
TPITSKDVKYGLERSFADSLTGGLSYHKTLLEGAQGYHGPFDGQELSSIETPNDKTIIFH
CCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEE
LNAPFGDWPWVVSLAAFTPVPDGKGPASGYGKLPVASGPYKVESNEAGKQAVFVRNTYWD
ECCCCCCCHHHHEEEHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEECCCC
KKTDPVRTAGPDKIVFKMGQDTSVAAQSIMQGTGEGKNSFLSGFVPAAQLAQAQANPNYK
CCCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHCCCCHH
KLLTTSGDGALEYLAINTQHVKNAKIRQALQYAVDKKAYQTASGGEIAGNFATTLITPGI
EEEEECCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCC
EGREDYDLYKADPTGDVDKAKQLIKESGEQAPTLKLIATSAQAETASSIQTSLKRAGVKV
CCCCCCCEEECCCCCCHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCEE
DIQTLNDDVYSDTLTNDKGDYDLAISSWQPDFPSPYANISPLFDSSQIGHGNYNLARYAN
EEEECCCCHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC
PKVDELIKKATETIDQTEAGKIWAEADKTIMADAPVVPLIYSKNTFIHGSNVTNFVIGNF
CCHHHHHHHHHHHHHHHCCCCEEECCCCEEEECCCEEEEEECCCEEEECCCCCEEEEECC
PAYPDYTQVSLASAN
CCCCCCCEEEEECCC
>Mature Secondary Structure
MKNNAWRVFAAGACAAVLALSGCGASNDNAATGSASGTTVKGGTLNVLLSSTEMDLDPAK
CCCCCEEEEECHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCEEEEEEECCCCCCCCCC
SQGLPTTTNGNIFRRLTAWKITDKGETKVVPDLATDTGKSSDDGKTWTYTLKDGLKFSDG
CCCCCCCCCCCEEEEEEEEEECCCCCCEECCCCCCCCCCCCCCCCEEEEEECCCCEECCC
TPITSKDVKYGLERSFADSLTGGLSYHKTLLEGAQGYHGPFDGQELSSIETPNDKTIIFH
CCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEE
LNAPFGDWPWVVSLAAFTPVPDGKGPASGYGKLPVASGPYKVESNEAGKQAVFVRNTYWD
ECCCCCCCHHHHEEEHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEECCCC
KKTDPVRTAGPDKIVFKMGQDTSVAAQSIMQGTGEGKNSFLSGFVPAAQLAQAQANPNYK
CCCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHCCCCHH
KLLTTSGDGALEYLAINTQHVKNAKIRQALQYAVDKKAYQTASGGEIAGNFATTLITPGI
EEEEECCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCC
EGREDYDLYKADPTGDVDKAKQLIKESGEQAPTLKLIATSAQAETASSIQTSLKRAGVKV
CCCCCCCEEECCCCCCHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCEE
DIQTLNDDVYSDTLTNDKGDYDLAISSWQPDFPSPYANISPLFDSSQIGHGNYNLARYAN
EEEECCCCHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC
PKVDELIKKATETIDQTEAGKIWAEADKTIMADAPVVPLIYSKNTFIHGSNVTNFVIGNF
CCHHHHHHHHHHHHHHHCCCCEEECCCCEEEECCCEEEEEECCCEEEECCCCCEEEEECC
PAYPDYTQVSLASAN
CCCCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]