| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is 213691711
Identifier: 213691711
GI number: 213691711
Start: 953543
End: 954070
Strand: Reverse
Name: 213691711
Synonym: Blon_0816
Alternate gene names: NA
Gene position: 954070-953543 (Counterclockwise)
Preceding gene: 213691715
Following gene: 213691710
Centisome position: 33.68
GC content: 64.58
Gene sequence:
>528_bases GTGTGCGCCCGCGCAGGGGCATGCTCCGATGCTCACCGCTGTGGCAGACGTCGTCATGGTTACGACCAAGGTGGCGGCGT GCGTCGTTGGCGTCATCGGGATTTCGGCTGCTGGCGGGTCGAACTGGTCGCCATGATGCCGCGCGTGGACTGTCCCGGGT GCGGGGTCGTGGTCGCGTCCGTGCCGTGGGCGGAACCGGGCAGCCGGTTCACGCGCGACTTCGAGTCCGAGTGCGCGTGG CTGATGAGCGACCAAGCCAAGACGGAATTGAACCATTGGGTGTTCTGGGCGTCCCACAACCGTATCCCCGAGATAGTCGA ACTCGCGAGGAGGATCAGGAGACGGCGCCCGGACATCCTCAGGACCATCCAACTCGGCTACTCCAACGCCAGGCTCGAGG CGTCCGACAACCGCATCAAGGTCACCATCCGCATGGCCTACGGCTTCCACCACGTCACCAACCTCATAGCACTCGTCATG CTCCGTTGCGGCGGACTCGACGTCCGACTCCCACAACCCGCAATCTAA
Upstream 100 bases:
>100_bases AACAGCATATTCAACCAGCTCCTCAACGTCAAAGGCGTGGTGGTCGAGACCGTGCGGATCGTCGATTCGCCCCTGCGCCC CGAGCCCGTGCTCGAGGTTC
Downstream 100 bases:
>100_bases CCCACGAAAACAGCAGAAGCCTCAAAAGTAATGAGTAAATATGATAGTCTGGTCAAGTATATATGTATCCTTGACGGAGA TAGTTTTGGCTCTTGGGTTA
Product: Transposase and inactivated derivatives-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 175; Mature: 175
Protein sequence:
>175_residues MCARAGACSDAHRCGRRRHGYDQGGGVRRWRHRDFGCWRVELVAMMPRVDCPGCGVVVASVPWAEPGSRFTRDFESECAW LMSDQAKTELNHWVFWASHNRIPEIVELARRIRRRRPDILRTIQLGYSNARLEASDNRIKVTIRMAYGFHHVTNLIALVM LRCGGLDVRLPQPAI
Sequences:
>Translated_175_residues MCARAGACSDAHRCGRRRHGYDQGGGVRRWRHRDFGCWRVELVAMMPRVDCPGCGVVVASVPWAEPGSRFTRDFESECAW LMSDQAKTELNHWVFWASHNRIPEIVELARRIRRRRPDILRTIQLGYSNARLEASDNRIKVTIRMAYGFHHVTNLIALVM LRCGGLDVRLPQPAI >Mature_175_residues MCARAGACSDAHRCGRRRHGYDQGGGVRRWRHRDFGCWRVELVAMMPRVDCPGCGVVVASVPWAEPGSRFTRDFESECAW LMSDQAKTELNHWVFWASHNRIPEIVELARRIRRRRPDILRTIQLGYSNARLEASDNRIKVTIRMAYGFHHVTNLIALVM LRCGGLDVRLPQPAI
Specific function: Unknown
COG id: COG3464
COG function: function code L; Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transposase 12 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002560 [H]
Pfam domain/function: PF01610 Transposase_12 [H]
EC number: NA
Molecular weight: Translated: 20082; Mature: 20082
Theoretical pI: Translated: 10.19; Mature: 10.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.6 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 8.0 %Cys+Met (Translated Protein) 4.6 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 8.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCARAGACSDAHRCGRRRHGYDQGGGVRRWRHRDFGCWRVELVAMMPRVDCPGCGVVVAS CCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHCCCCCHHHHHHHHHCCCCCCCCCCEEEEE VPWAEPGSRFTRDFESECAWLMSDQAKTELNHWVFWASHNRIPEIVELARRIRRRRPDIL CCCCCCCHHHHHHHHHHHHHHHCCHHHHHHCEEEEEECCCCCHHHHHHHHHHHHCCHHHH RTIQLGYSNARLEASDNRIKVTIRMAYGFHHVTNLIALVMLRCGGLDVRLPQPAI HHHHCCCCCCEEEECCCEEEEEEEEEHHHHHHHHHHHHHHHHCCCCEECCCCCCC >Mature Secondary Structure MCARAGACSDAHRCGRRRHGYDQGGGVRRWRHRDFGCWRVELVAMMPRVDCPGCGVVVAS CCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHCCCCCHHHHHHHHHCCCCCCCCCCEEEEE VPWAEPGSRFTRDFESECAWLMSDQAKTELNHWVFWASHNRIPEIVELARRIRRRRPDIL CCCCCCCHHHHHHHHHHHHHHHCCHHHHHHCEEEEEECCCCCHHHHHHHHHHHHCCHHHH RTIQLGYSNARLEASDNRIKVTIRMAYGFHHVTNLIALVMLRCGGLDVRLPQPAI HHHHCCCCCCEEEECCCEEEEEEEEEHHHHHHHHHHHHHHHHCCCCEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]