| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is 213691245
Identifier: 213691245
GI number: 213691245
Start: 380780
End: 381496
Strand: Reverse
Name: 213691245
Synonym: Blon_0328
Alternate gene names: NA
Gene position: 381496-380780 (Counterclockwise)
Preceding gene: 213691246
Following gene: 213691244
Centisome position: 13.47
GC content: 59.14
Gene sequence:
>717_bases ATGCCACGTCCACGCCATGATTCCGAGGTGCTGCCCGCCAAAGAACGCCTAGAGAACGCTTTCTGGGAATTGCTCGCCGA CCGCGACTACCGCAAGATCACCGTCACCGATGTGGTGCGTGAGGCTGGCGTGAACCGTAATTCGTTCTATTATCACTTCT CCAGCCTGCCCGAATTGGCCGATTCAGCCATCCTGCATCAGGTCGAATCGATTCCGATCAACCGCACCCCCGACCCAAAT GGCAATCCCGAGGAACAATGGCGAGACCGCGTCACCGCCACGCTCTCAGATCCAGAGCAACGGCAACGCCTCGACCGCCT GGCCCTGTTGGCAGGCCCGCACAGCACGCTTGAACTGACCGAATCGCTGCGCGACTTCTGCCGTCTGCAAATGCTCAGCA CATTGCAACGCGACCCCAAGAACCTTGACCTGAAAACCGATCTCATGGTCGAGTTCACCGTGGGCGGCATGCTCGCCGTG CTGCAACGTTGGCCCGAATTGAGCGACGCCATCGAAATCAAAGACCTGCTTAAAGAAGATGTGGCCGTGCTGGCCATGGG CATATACCTGGCCATGAGCCAAAAGGACATGCTTAATTACTGGAATCGCATCTTCGTGCACAATGCGCAGGATTCGGCCG CCCCCGGCATGCATGCCGCGCCATCCCCCATCTCACCGTCGAACGGCCCCGCAGGATTCCCCGGGTACACCGCTTGA
Upstream 100 bases:
>100_bases CGCCGATTAGCTCATAGACATGTCCACAAATAATAGTTATACTGCCCAATAAGTTATTAGACAGCGTGACCATATCACGC TGGTGCATCAGGAGGAAGAG
Downstream 100 bases:
>100_bases CCGAAAACCAGTGAGTCTGGATTGCTTCCGTCGAATGAACCCTGCGTGAGGTTTCTCACAAGGCGCAATCAGCCTCTCAT GCTGGCGTTTCCAGCCCTCA
Product: transcriptional regulator, TetR family
Products: NA
Alternate protein names: TetR Family Transcriptional Regulator; Transcriptional Regulator
Number of amino acids: Translated: 238; Mature: 237
Protein sequence:
>238_residues MPRPRHDSEVLPAKERLENAFWELLADRDYRKITVTDVVREAGVNRNSFYYHFSSLPELADSAILHQVESIPINRTPDPN GNPEEQWRDRVTATLSDPEQRQRLDRLALLAGPHSTLELTESLRDFCRLQMLSTLQRDPKNLDLKTDLMVEFTVGGMLAV LQRWPELSDAIEIKDLLKEDVAVLAMGIYLAMSQKDMLNYWNRIFVHNAQDSAAPGMHAAPSPISPSNGPAGFPGYTA
Sequences:
>Translated_238_residues MPRPRHDSEVLPAKERLENAFWELLADRDYRKITVTDVVREAGVNRNSFYYHFSSLPELADSAILHQVESIPINRTPDPN GNPEEQWRDRVTATLSDPEQRQRLDRLALLAGPHSTLELTESLRDFCRLQMLSTLQRDPKNLDLKTDLMVEFTVGGMLAV LQRWPELSDAIEIKDLLKEDVAVLAMGIYLAMSQKDMLNYWNRIFVHNAQDSAAPGMHAAPSPISPSNGPAGFPGYTA >Mature_237_residues PRPRHDSEVLPAKERLENAFWELLADRDYRKITVTDVVREAGVNRNSFYYHFSSLPELADSAILHQVESIPINRTPDPNG NPEEQWRDRVTATLSDPEQRQRLDRLALLAGPHSTLELTESLRDFCRLQMLSTLQRDPKNLDLKTDLMVEFTVGGMLAVL QRWPELSDAIEIKDLLKEDVAVLAMGIYLAMSQKDMLNYWNRIFVHNAQDSAAPGMHAAPSPISPSNGPAGFPGYTA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26908; Mature: 26777
Theoretical pI: Translated: 5.00; Mature: 5.00
Prosite motif: PS50977 HTH_TETR_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRPRHDSEVLPAKERLENAFWELLADRDYRKITVTDVVREAGVNRNSFYYHFSSLPELA CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHCCCCCCEEEEHHHHHHHH DSAILHQVESIPINRTPDPNGNPEEQWRDRVTATLSDPEQRQRLDRLALLAGPHSTLELT HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHH ESLRDFCRLQMLSTLQRDPKNLDLKTDLMVEFTVGGMLAVLQRWPELSDAIEIKDLLKED HHHHHHHHHHHHHHHHCCCCCCCCCHHEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHH VAVLAMGIYLAMSQKDMLNYWNRIFVHNAQDSAAPGMHAAPSPISPSNGPAGFPGYTA HHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure PRPRHDSEVLPAKERLENAFWELLADRDYRKITVTDVVREAGVNRNSFYYHFSSLPELA CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHCCCCCCEEEEHHHHHHHH DSAILHQVESIPINRTPDPNGNPEEQWRDRVTATLSDPEQRQRLDRLALLAGPHSTLELT HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHH ESLRDFCRLQMLSTLQRDPKNLDLKTDLMVEFTVGGMLAVLQRWPELSDAIEIKDLLKED HHHHHHHHHHHHHHHHCCCCCCCCCHHEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHH VAVLAMGIYLAMSQKDMLNYWNRIFVHNAQDSAAPGMHAAPSPISPSNGPAGFPGYTA HHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA