Definition Bifidobacterium longum subsp. infantis ATCC 15697, complete genome.
Accession NC_011593
Length 2,832,748

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The map label for this gene is 213690933

Identifier: 213690933

GI number: 213690933

Start: 4834

End: 5304

Strand: Direct

Name: 213690933

Synonym: Blon_0005

Alternate gene names: NA

Gene position: 4834-5304 (Clockwise)

Preceding gene: 213690932

Following gene: 213690934

Centisome position: 0.17

GC content: 62.21

Gene sequence:

>471_bases
ATGAACCCGCCGATCGCCCGCCAACTCAACCTGGACGAGACCAAACTGCCGGCCGAAATATTCGAGCGGATCTCCCGTCG
CGGGGCGACCTTGAAGGACTACAGACGCCGCCGTGAAGAGGCCATCGAAAACTTCGGCAAACCGGGGCGCGATCCGGCTG
AACTGGGCAGCGTGATGACCACCATCGCCGGCAATGGCGTCTGGGCGGCGAATATGAAGCTTGCGCAATTGCGCAACCAT
TGGGACCAAGTGGTGGGGCAGGCCATCGCCAGCCATTCGGCAGTCGCCGATTTCATGGACGGTGTACTGACCATCCGTGC
CGAATCCACGGTCTGGGCCACGCAGCTGACCTACCTTATCCCCCAACTCACCGATACCATCCGTCGCAATCTCAGAGGAT
TGACCATCACCGAGATTCGCGTGACCGGCCCGGCCGCCGGATACACGCGCAAATGGGCTCGGCGGCGGTAG

Upstream 100 bases:

>100_bases
CAACTCTGGGCAATTTGTCCGATTTGCGGGAAAACGAGAGTTTGGGTAAGTATGACGGAAAAACCGCGGTGGACAGCGCG
TCCGTAGAACGGAAAGTGTC

Downstream 100 bases:

>100_bases
CCAAGATACCAAACAAATTCGCAGAAGCCTCGCTATGGCGCTCGTCGGGTTAGACGAGTAAAATCACATGCAGTATGGTC
AAATGGCTAGAAGAGTCCTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 156

Protein sequence:

>156_residues
MNPPIARQLNLDETKLPAEIFERISRRGATLKDYRRRREEAIENFGKPGRDPAELGSVMTTIAGNGVWAANMKLAQLRNH
WDQVVGQAIASHSAVADFMDGVLTIRAESTVWATQLTYLIPQLTDTIRRNLRGLTITEIRVTGPAAGYTRKWARRR

Sequences:

>Translated_156_residues
MNPPIARQLNLDETKLPAEIFERISRRGATLKDYRRRREEAIENFGKPGRDPAELGSVMTTIAGNGVWAANMKLAQLRNH
WDQVVGQAIASHSAVADFMDGVLTIRAESTVWATQLTYLIPQLTDTIRRNLRGLTITEIRVTGPAAGYTRKWARRR
>Mature_156_residues
MNPPIARQLNLDETKLPAEIFERISRRGATLKDYRRRREEAIENFGKPGRDPAELGSVMTTIAGNGVWAANMKLAQLRNH
WDQVVGQAIASHSAVADFMDGVLTIRAESTVWATQLTYLIPQLTDTIRRNLRGLTITEIRVTGPAAGYTRKWARRR

Specific function: Unknown

COG id: COG5512

COG function: function code R; Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0232 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007922
- InterPro:   IPR023007 [H]

Pfam domain/function: PF05258 DUF721 [H]

EC number: NA

Molecular weight: Translated: 17583; Mature: 17583

Theoretical pI: Translated: 11.15; Mature: 11.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPPIARQLNLDETKLPAEIFERISRRGATLKDYRRRREEAIENFGKPGRDPAELGSVMT
CCCCCCCCCCCCHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
TIAGNGVWAANMKLAQLRNHWDQVVGQAIASHSAVADFMDGVLTIRAESTVWATQLTYLI
HHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHH
PQLTDTIRRNLRGLTITEIRVTGPAAGYTRKWARRR
HHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHCCC
>Mature Secondary Structure
MNPPIARQLNLDETKLPAEIFERISRRGATLKDYRRRREEAIENFGKPGRDPAELGSVMT
CCCCCCCCCCCCHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
TIAGNGVWAANMKLAQLRNHWDQVVGQAIASHSAVADFMDGVLTIRAESTVWATQLTYLI
HHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHH
PQLTDTIRRNLRGLTITEIRVTGPAAGYTRKWARRR
HHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12381787 [H]