| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is 213690933
Identifier: 213690933
GI number: 213690933
Start: 4834
End: 5304
Strand: Direct
Name: 213690933
Synonym: Blon_0005
Alternate gene names: NA
Gene position: 4834-5304 (Clockwise)
Preceding gene: 213690932
Following gene: 213690934
Centisome position: 0.17
GC content: 62.21
Gene sequence:
>471_bases ATGAACCCGCCGATCGCCCGCCAACTCAACCTGGACGAGACCAAACTGCCGGCCGAAATATTCGAGCGGATCTCCCGTCG CGGGGCGACCTTGAAGGACTACAGACGCCGCCGTGAAGAGGCCATCGAAAACTTCGGCAAACCGGGGCGCGATCCGGCTG AACTGGGCAGCGTGATGACCACCATCGCCGGCAATGGCGTCTGGGCGGCGAATATGAAGCTTGCGCAATTGCGCAACCAT TGGGACCAAGTGGTGGGGCAGGCCATCGCCAGCCATTCGGCAGTCGCCGATTTCATGGACGGTGTACTGACCATCCGTGC CGAATCCACGGTCTGGGCCACGCAGCTGACCTACCTTATCCCCCAACTCACCGATACCATCCGTCGCAATCTCAGAGGAT TGACCATCACCGAGATTCGCGTGACCGGCCCGGCCGCCGGATACACGCGCAAATGGGCTCGGCGGCGGTAG
Upstream 100 bases:
>100_bases CAACTCTGGGCAATTTGTCCGATTTGCGGGAAAACGAGAGTTTGGGTAAGTATGACGGAAAAACCGCGGTGGACAGCGCG TCCGTAGAACGGAAAGTGTC
Downstream 100 bases:
>100_bases CCAAGATACCAAACAAATTCGCAGAAGCCTCGCTATGGCGCTCGTCGGGTTAGACGAGTAAAATCACATGCAGTATGGTC AAATGGCTAGAAGAGTCCTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 156; Mature: 156
Protein sequence:
>156_residues MNPPIARQLNLDETKLPAEIFERISRRGATLKDYRRRREEAIENFGKPGRDPAELGSVMTTIAGNGVWAANMKLAQLRNH WDQVVGQAIASHSAVADFMDGVLTIRAESTVWATQLTYLIPQLTDTIRRNLRGLTITEIRVTGPAAGYTRKWARRR
Sequences:
>Translated_156_residues MNPPIARQLNLDETKLPAEIFERISRRGATLKDYRRRREEAIENFGKPGRDPAELGSVMTTIAGNGVWAANMKLAQLRNH WDQVVGQAIASHSAVADFMDGVLTIRAESTVWATQLTYLIPQLTDTIRRNLRGLTITEIRVTGPAAGYTRKWARRR >Mature_156_residues MNPPIARQLNLDETKLPAEIFERISRRGATLKDYRRRREEAIENFGKPGRDPAELGSVMTTIAGNGVWAANMKLAQLRNH WDQVVGQAIASHSAVADFMDGVLTIRAESTVWATQLTYLIPQLTDTIRRNLRGLTITEIRVTGPAAGYTRKWARRR
Specific function: Unknown
COG id: COG5512
COG function: function code R; Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0232 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007922 - InterPro: IPR023007 [H]
Pfam domain/function: PF05258 DUF721 [H]
EC number: NA
Molecular weight: Translated: 17583; Mature: 17583
Theoretical pI: Translated: 11.15; Mature: 11.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNPPIARQLNLDETKLPAEIFERISRRGATLKDYRRRREEAIENFGKPGRDPAELGSVMT CCCCCCCCCCCCHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH TIAGNGVWAANMKLAQLRNHWDQVVGQAIASHSAVADFMDGVLTIRAESTVWATQLTYLI HHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHH PQLTDTIRRNLRGLTITEIRVTGPAAGYTRKWARRR HHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHCCC >Mature Secondary Structure MNPPIARQLNLDETKLPAEIFERISRRGATLKDYRRRREEAIENFGKPGRDPAELGSVMT CCCCCCCCCCCCHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH TIAGNGVWAANMKLAQLRNHWDQVVGQAIASHSAVADFMDGVLTIRAESTVWATQLTYLI HHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHH PQLTDTIRRNLRGLTITEIRVTGPAAGYTRKWARRR HHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12381787 [H]