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The map label for this gene is yjfH [C]

Identifier: 213158283

GI number: 213158283

Start: 3098456

End: 3099232

Strand: Direct

Name: yjfH [C]

Synonym: AB57_3006

Alternate gene names: 213158283

Gene position: 3098456-3099232 (Clockwise)

Preceding gene: 213158282

Following gene: 213158284

Centisome position: 76.5

GC content: 37.19

Gene sequence:

>777_bases
ATGGCGGTTATTTTTTTAGAATCAAAAGACAATGCAAAAATTAAACATTTGCGTGGTTTAATTGAACTCAATAGCGCCCG
AAAAAAGCATCAACAAACAGTTCTTGAAGGTACCCATCTTTGTCTAGCTTGGTTACAACAACAGAAAAAACTCTTTTCGT
TGTTTACGACTGAACAAGCCTTAGAACATCCCGATTTAAAGAAAATCATTGAACTTCACCAAGGTCATGTCTTTATTATT
AGCGAAGTTTTATATAAAGATTTAAGTACTTTAGGTAATACTCTTCCTTGCTTGGCTATTATCGATTTACCGAAAACTGC
GTCAACCATTGACTATAGCGTAGATACGTTAATTCTAGAAAATGTACAAGATCCGGGTAACGTAGGTACATTGTTACGTT
CAGCGGCAGCAGCAAATATAAAACAGATTATTTGCACACAAGGCTCTGCCTCACTTTGGTCTCCACGAGTTTTAAGAGCA
GGTATGGGGGCACATTTTAGCCTATCTTGTTTTGAAAACTTTCAATTGACCGATATTCTTCCTAAATTTGATATTCCTGT
TTTCGTTACAAGCTCTCATCGCTCGACTAGTCTTTATTCAAAAGACCTTTCAAAACCATGTGTTTGGATTTTAGGCAATG
AAGGACAAGGTGCAAGTGATTATGCTTTAGAACATGCACAATCAGTGACTATACCGCAGCCCGGTGGTCAAGAGTCATTA
AATGTAGCCATTGCAGGATCAATTTGTTTTTTTGAAATGGTTCGCCAACGCCAATAA

Upstream 100 bases:

>100_bases
TCGGTTCTAAGAATGAAGTTGAACGCGTAACAAGCTATCATTAATAATTTAAATTACACAGGGCGTCATAGTATGATGAC
GCCCTTTTGGATATTCCCTT

Downstream 100 bases:

>100_bases
AACGTTAATTTATTTTACATCGCTCATATTTGTGAAAAAAATCATTTACACTACTAAAAAATAGCCGATTGTTGTCAACC
TCCCACCTCTTTTCAACGTT

Product: tRNA/rRNA methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 257

Protein sequence:

>258_residues
MAVIFLESKDNAKIKHLRGLIELNSARKKHQQTVLEGTHLCLAWLQQQKKLFSLFTTEQALEHPDLKKIIELHQGHVFII
SEVLYKDLSTLGNTLPCLAIIDLPKTASTIDYSVDTLILENVQDPGNVGTLLRSAAAANIKQIICTQGSASLWSPRVLRA
GMGAHFSLSCFENFQLTDILPKFDIPVFVTSSHRSTSLYSKDLSKPCVWILGNEGQGASDYALEHAQSVTIPQPGGQESL
NVAIAGSICFFEMVRQRQ

Sequences:

>Translated_258_residues
MAVIFLESKDNAKIKHLRGLIELNSARKKHQQTVLEGTHLCLAWLQQQKKLFSLFTTEQALEHPDLKKIIELHQGHVFII
SEVLYKDLSTLGNTLPCLAIIDLPKTASTIDYSVDTLILENVQDPGNVGTLLRSAAAANIKQIICTQGSASLWSPRVLRA
GMGAHFSLSCFENFQLTDILPKFDIPVFVTSSHRSTSLYSKDLSKPCVWILGNEGQGASDYALEHAQSVTIPQPGGQESL
NVAIAGSICFFEMVRQRQ
>Mature_257_residues
AVIFLESKDNAKIKHLRGLIELNSARKKHQQTVLEGTHLCLAWLQQQKKLFSLFTTEQALEHPDLKKIIELHQGHVFIIS
EVLYKDLSTLGNTLPCLAIIDLPKTASTIDYSVDTLILENVQDPGNVGTLLRSAAAANIKQIICTQGSASLWSPRVLRAG
MGAHFSLSCFENFQLTDILPKFDIPVFVTSSHRSTSLYSKDLSKPCVWILGNEGQGASDYALEHAQSVTIPQPGGQESLN
VAIAGSICFFEMVRQRQ

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI8922534, Length=195, Percent_Identity=30.2564102564103, Blast_Score=83, Evalue=2e-16,
Organism=Escherichia coli, GI1790623, Length=160, Percent_Identity=31.25, Blast_Score=78, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 28499; Mature: 28368

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVIFLESKDNAKIKHLRGLIELNSARKKHQQTVLEGTHLCLAWLQQQKKLFSLFTTEQA
CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LEHPDLKKIIELHQGHVFIISEVLYKDLSTLGNTLPCLAIIDLPKTASTIDYSVDTLILE
HCCCCHHHHHHHHCCCEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHCHHHHHHHHH
NVQDPGNVGTLLRSAAAANIKQIICTQGSASLWSPRVLRAGMGAHFSLSCFENFQLTDIL
CCCCCCHHHHHHHHHHHHHHHHHEECCCCCCCCCCHHHHHCCCCCEEEEHHCCCCHHHCC
PKFDIPVFVTSSHRSTSLYSKDLSKPCVWILGNEGQGASDYALEHAQSVTIPQPGGQESL
CCCCCCEEEECCCCCHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCEECCCCCCCCCCE
NVAIAGSICFFEMVRQRQ
EEEEEHHHHHHHHHHHCC
>Mature Secondary Structure 
AVIFLESKDNAKIKHLRGLIELNSARKKHQQTVLEGTHLCLAWLQQQKKLFSLFTTEQA
EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LEHPDLKKIIELHQGHVFIISEVLYKDLSTLGNTLPCLAIIDLPKTASTIDYSVDTLILE
HCCCCHHHHHHHHCCCEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHCHHHHHHHHH
NVQDPGNVGTLLRSAAAANIKQIICTQGSASLWSPRVLRAGMGAHFSLSCFENFQLTDIL
CCCCCCHHHHHHHHHHHHHHHHHEECCCCCCCCCCHHHHHCCCCCEEEEHHCCCCHHHCC
PKFDIPVFVTSSHRSTSLYSKDLSKPCVWILGNEGQGASDYALEHAQSVTIPQPGGQESL
CCCCCCEEEECCCCCHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCEECCCCCCCCCCE
NVAIAGSICFFEMVRQRQ
EEEEEHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]