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The map label for this gene is 213158284

Identifier: 213158284

GI number: 213158284

Start: 3099392

End: 3100006

Strand: Direct

Name: 213158284

Synonym: AB57_3007

Alternate gene names: NA

Gene position: 3099392-3100006 (Clockwise)

Preceding gene: 213158283

Following gene: 213158285

Centisome position: 76.52

GC content: 41.14

Gene sequence:

>615_bases
ATGGATTTAGCACCGAAAAAGTCTCGATCGGAAGCATCTAGTGCTCATGCCAGCACGGCTGAGCAACGCCTAAAGGTTTT
CATGCAAGATGTTACTGGTCGTGCTTTAGTGATGATGGAAAGTGCTACCCAAGGACAACAAGGCATTGCTATGGACTTGG
TTCAAGAAGCATTTATTGCTTTACACAAGTCTTACGCCGATCGAAGTACTGAAGAATGGTATCCCCTATTTTATACTATT
CTAAATAATAAACTTCAGGATTGGCGCCGCAAAGAAGCACGTCGGGCAAACCCATTTTCATTCTTCAAAAAAGTTAGTCT
AGACAATGATGATGAAGAAATCATTGATATTGTCGATGAAAAAGCAATCAATCCAGCAGATTTTCTAGATCAAGCAGTGA
CCATAGAAGAGATCCAGGAAGCGATTGCAAAACTACCTGTTCGTCAACAACAAGCTTTTATGTTACGTGCGTGGGAAGGT
TTTGATACCCATACTACAGCGCAAATTATGAACTGCACCGAAGGTAGTGTAAAAACCCATTATCATCGAGCAATTCAGGG
ACTTAGAGAGTATTTAGCGCATTTAAATCCCATGGGAGGTTCCAATGAATCATGA

Upstream 100 bases:

>100_bases
AATAGCCGATTGTTGTCAACCTCCCACCTCTTTTCAACGTTATATAAGAGATATATTGAAGATAAGGTGGGTACGTCCAA
TGACAGGATTTTCCATCTCC

Downstream 100 bases:

>100_bases
TGATTTCACTAAAAAGGTGACATCCAAACTCGATAGTTTGGCCCATCACCATAAAAATAAAACAGTGGTGATGAATCATG
TGCTTGACCATATCCAGCAA

Product: RNA polymerase factor sigma-70

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Factor; Sigma-; RNA Polymerase Sigma Factor Transcription Regulator Protein; RNA Polymerase Sigma-E Factor; RNA Polymerase Sigma-70 Factor; Specialized Sigma Subunits Of RNA Polymerase

Number of amino acids: Translated: 204; Mature: 204

Protein sequence:

>204_residues
MDLAPKKSRSEASSAHASTAEQRLKVFMQDVTGRALVMMESATQGQQGIAMDLVQEAFIALHKSYADRSTEEWYPLFYTI
LNNKLQDWRRKEARRANPFSFFKKVSLDNDDEEIIDIVDEKAINPADFLDQAVTIEEIQEAIAKLPVRQQQAFMLRAWEG
FDTHTTAQIMNCTEGSVKTHYHRAIQGLREYLAHLNPMGGSNES

Sequences:

>Translated_204_residues
MDLAPKKSRSEASSAHASTAEQRLKVFMQDVTGRALVMMESATQGQQGIAMDLVQEAFIALHKSYADRSTEEWYPLFYTI
LNNKLQDWRRKEARRANPFSFFKKVSLDNDDEEIIDIVDEKAINPADFLDQAVTIEEIQEAIAKLPVRQQQAFMLRAWEG
FDTHTTAQIMNCTEGSVKTHYHRAIQGLREYLAHLNPMGGSNES
>Mature_204_residues
MDLAPKKSRSEASSAHASTAEQRLKVFMQDVTGRALVMMESATQGQQGIAMDLVQEAFIALHKSYADRSTEEWYPLFYTI
LNNKLQDWRRKEARRANPFSFFKKVSLDNDDEEIIDIVDEKAINPADFLDQAVTIEEIQEAIAKLPVRQQQAFMLRAWEG
FDTHTTAQIMNCTEGSVKTHYHRAIQGLREYLAHLNPMGGSNES

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23240; Mature: 23240

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLAPKKSRSEASSAHASTAEQRLKVFMQDVTGRALVMMESATQGQQGIAMDLVQEAFIA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHH
LHKSYADRSTEEWYPLFYTILNNKLQDWRRKEARRANPFSFFKKVSLDNDDEEIIDIVDE
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHH
KAINPADFLDQAVTIEEIQEAIAKLPVRQQQAFMLRAWEGFDTHTTAQIMNCTEGSVKTH
HCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHH
YHRAIQGLREYLAHLNPMGGSNES
HHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MDLAPKKSRSEASSAHASTAEQRLKVFMQDVTGRALVMMESATQGQQGIAMDLVQEAFIA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHH
LHKSYADRSTEEWYPLFYTILNNKLQDWRRKEARRANPFSFFKKVSLDNDDEEIIDIVDE
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHH
KAINPADFLDQAVTIEEIQEAIAKLPVRQQQAFMLRAWEGFDTHTTAQIMNCTEGSVKTH
HCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHH
YHRAIQGLREYLAHLNPMGGSNES
HHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA