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The map label for this gene is soxA [H]

Identifier: 212224431

GI number: 212224431

Start: 1166217

End: 1167701

Strand: Reverse

Name: soxA [H]

Synonym: TON_1282

Alternate gene names: 212224431

Gene position: 1167701-1166217 (Counterclockwise)

Preceding gene: 212224432

Following gene: 212224430

Centisome position: 63.2

GC content: 54.21

Gene sequence:

>1485_bases
ATGAGACCGCTCGACCTGACGGAAAAAGACCCTTCTAAGAGAATCACGATTCACTTTGAGGGGAAACCCCTCGAGGCCTA
TGAGGGTGAGAAGCTCACTGTTGCCCTTCTGGCTAACGGCATCTACTGGCTCACCACGAGCACTGAGGGGAGAAAGAGAG
GTGCCTTTACGTTCGGCCCCGTTCCGATGGTCGTCAACGGCGTGAAGAACATCAACGGCAGAAAAACGGTTGTAAAGGAT
GGCATCAGGATAGAGCGTCAGAACTACGGTGATTTTCAGGAGACTGTTGAAGTGGATGAGAGCAAACCCGTAACTAGACA
GGTCGTGGATGTGGCCGTTATAGGTGCTGGCCCCGCCGGAATAGGGGCAGCACTTGAGCTTCAGGAGCATCTGACGGTCG
CCCTCATTGAGGAGCGCGGCTGGCTCGGCGGAGACATGTGGCTCAAGGGCCTCCCACAGGAAGGTTTTGATGGTGAACCA
AAGGAGGTTATAAAGTCACTCGTTGCCCAGTTCAACGACAACGTTCGCGTTTTCAGGAAAACGATAGCGTTGGGAATCTT
CGACAAGGGGGAGTACTTCCTGGTTCCCATCGTTAAGGGAGACCAGCTTATAGAACTCATGGCGAGACGCGTTGTTTTGG
CCGTTGGAGCAGTTGACAATATTCTCCTCTTTGAGAACAACGACATTCCGGGCGTTTTCAGGCGCGACTTTGCCCTTGAG
GTCATGAACGTCTGGGGTGTCGCTCCCGGCAAAAAAGTCGCAGTCGTCGGGGGCAGGCCGGAGGACATCGTTCCTGAGCT
TGAGAGATGGGGTATCGAGTACATCGTCGTCCCAAACCCGAAGCGCGTTGAAGGAACGGAAAAGGTTGAAAAGCTGATAG
ATATGAACGGCAACGTTTACGAGGTTGACGCTGTGATAGTTTCCGATGGCAGAAGGCCGGACATAAACCCGATAACCCAG
GCCGGCGGAAAGCTTCGCTTCAAGAGAGGCTACTACATGCCAGTTCTCGACTCCCAGCACAGAATAAGGGACGGCATCTA
CGTCGCTGGAAGCGCCGTCAGCATAAAGCCCCACTATGCCAACTACCTTGAAGGCAGACTCGTTGGGGCATACATCCTTG
GAGAGTTCGGCTACGAAGCCCAGCCGTGTGTTTATGAGAAGAAGCTGAGGGAGTACGAGCCTGAGGCTATCACCATCCAC
AAGATAGAGTTCGACGCTTTTAGTCTGGAGGACGTCCAGATATGTGGCTGCGACGTCTCGCTGAAGAAGGTCGACGATGT
GGTGAGAAGTGGTATAACAGACCTTCAGATAATCAAGCGTCTCACCCACCTGGCCATGGGCTTCTGCCAAGGTCGCTTCT
GCCTCTTTAACGGCGCGGTGGTGGTTTCCCAGAGGGCCAACCTGGACATGGCGAAAATTGACCTGCCGGTAGCGAGACCG
CCGCTCAAGAACGTGAAGATGAAGGTTACCGCCGCTGGGGGATGA

Upstream 100 bases:

>100_bases
TTTAACCAAATGTTGTAAACCATTTTTGGTCAGCCTAACGTTTATAAGCATTGGTGATCATCTTAGAACGCCTGCTTTTA
GAAAATCCAGAGGTGGGAGC

Downstream 100 bases:

>100_bases
TGGCTTATGCCGACGAAAGAACTTCCCGAAAGAAGCGAAATCGTTATCATCGGCGGGGGAATAATAGGTGTGACCCTTGC
CCACGAGCTAGCTAAACGCG

Product: sarcosine oxidase, alpha subunit

Products: NA

Alternate protein names: Sarcosine oxidase subunit [H]

Number of amino acids: Translated: 494; Mature: 494

Protein sequence:

>494_residues
MRPLDLTEKDPSKRITIHFEGKPLEAYEGEKLTVALLANGIYWLTTSTEGRKRGAFTFGPVPMVVNGVKNINGRKTVVKD
GIRIERQNYGDFQETVEVDESKPVTRQVVDVAVIGAGPAGIGAALELQEHLTVALIEERGWLGGDMWLKGLPQEGFDGEP
KEVIKSLVAQFNDNVRVFRKTIALGIFDKGEYFLVPIVKGDQLIELMARRVVLAVGAVDNILLFENNDIPGVFRRDFALE
VMNVWGVAPGKKVAVVGGRPEDIVPELERWGIEYIVVPNPKRVEGTEKVEKLIDMNGNVYEVDAVIVSDGRRPDINPITQ
AGGKLRFKRGYYMPVLDSQHRIRDGIYVAGSAVSIKPHYANYLEGRLVGAYILGEFGYEAQPCVYEKKLREYEPEAITIH
KIEFDAFSLEDVQICGCDVSLKKVDDVVRSGITDLQIIKRLTHLAMGFCQGRFCLFNGAVVVSQRANLDMAKIDLPVARP
PLKNVKMKVTAAGG

Sequences:

>Translated_494_residues
MRPLDLTEKDPSKRITIHFEGKPLEAYEGEKLTVALLANGIYWLTTSTEGRKRGAFTFGPVPMVVNGVKNINGRKTVVKD
GIRIERQNYGDFQETVEVDESKPVTRQVVDVAVIGAGPAGIGAALELQEHLTVALIEERGWLGGDMWLKGLPQEGFDGEP
KEVIKSLVAQFNDNVRVFRKTIALGIFDKGEYFLVPIVKGDQLIELMARRVVLAVGAVDNILLFENNDIPGVFRRDFALE
VMNVWGVAPGKKVAVVGGRPEDIVPELERWGIEYIVVPNPKRVEGTEKVEKLIDMNGNVYEVDAVIVSDGRRPDINPITQ
AGGKLRFKRGYYMPVLDSQHRIRDGIYVAGSAVSIKPHYANYLEGRLVGAYILGEFGYEAQPCVYEKKLREYEPEAITIH
KIEFDAFSLEDVQICGCDVSLKKVDDVVRSGITDLQIIKRLTHLAMGFCQGRFCLFNGAVVVSQRANLDMAKIDLPVARP
PLKNVKMKVTAAGG
>Mature_494_residues
MRPLDLTEKDPSKRITIHFEGKPLEAYEGEKLTVALLANGIYWLTTSTEGRKRGAFTFGPVPMVVNGVKNINGRKTVVKD
GIRIERQNYGDFQETVEVDESKPVTRQVVDVAVIGAGPAGIGAALELQEHLTVALIEERGWLGGDMWLKGLPQEGFDGEP
KEVIKSLVAQFNDNVRVFRKTIALGIFDKGEYFLVPIVKGDQLIELMARRVVLAVGAVDNILLFENNDIPGVFRRDFALE
VMNVWGVAPGKKVAVVGGRPEDIVPELERWGIEYIVVPNPKRVEGTEKVEKLIDMNGNVYEVDAVIVSDGRRPDINPITQ
AGGKLRFKRGYYMPVLDSQHRIRDGIYVAGSAVSIKPHYANYLEGRLVGAYILGEFGYEAQPCVYEKKLREYEPEAITIH
KIEFDAFSLEDVQICGCDVSLKKVDDVVRSGITDLQIIKRLTHLAMGFCQGRFCLFNGAVVVSQRANLDMAKIDLPVARP
PLKNVKMKVTAAGG

Specific function: Catalyzes the oxidative demethylation of sarcosine to yield glycine, hydrogen peroxide and 5,10- methylenetetrahydrofolate [H]

COG id: COG0446

COG function: function code R; Uncharacterized NAD(FAD)-dependent dehydrogenases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gcvT family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013027
- InterPro:   IPR013977
- InterPro:   IPR006222
- InterPro:   IPR006277 [H]

Pfam domain/function: PF01571 GCV_T; PF08669 GCV_T_C; PF07992 Pyr_redox_2 [H]

EC number: =1.5.3.1 [H]

Molecular weight: Translated: 54764; Mature: 54764

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPLDLTEKDPSKRITIHFEGKPLEAYEGEKLTVALLANGIYWLTTSTEGRKRGAFTFGP
CCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEEECCEEEEEECCCCCCCCCEEECC
VPMVVNGVKNINGRKTVVKDGIRIERQNYGDFQETVEVDESKPVTRQVVDVAVIGAGPAG
HHHHHHHHCCCCCCEEEEECCEEEEECCCCCHHHHHCCCCCCCHHHEEEEEEEECCCCCC
IGAALELQEHLTVALIEERGWLGGDMWLKGLPQEGFDGEPKEVIKSLVAQFNDNVRVFRK
CCHHEEHHHCEEEEEEECCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHHHEEH
TIALGIFDKGEYFLVPIVKGDQLIELMARRVVLAVGAVDNILLFENNDIPGVFRRDFALE
HHHEEEECCCCEEEEEEECCHHHHHHHHHHHHHEECCCCEEEEEECCCCCCHHHHHHHHH
VMNVWGVAPGKKVAVVGGRPEDIVPELERWGIEYIVVPNPKRVEGTEKVEKLIDMNGNVY
HHHHHCCCCCCEEEEECCCCHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHCCCCCEE
EVDAVIVSDGRRPDINPITQAGGKLRFKRGYYMPVLDSQHRIRDGIYVAGSAVSIKPHYA
EEEEEEEECCCCCCCCHHHHCCCEEEEECCCCCCCCCCCHHHCCCEEEECCEEEECCHHH
NYLEGRLVGAYILGEFGYEAQPCVYEKKLREYEPEAITIHKIEFDAFSLEDVQICGCDVS
HHHCCEEEEEEEEECCCCCCCCHHHHHHHHHCCCCEEEEEEEEECEECCCCEEEEECCCC
LKKVDDVVRSGITDLQIIKRLTHLAMGFCQGRFCLFNGAVVVSQRANLDMAKIDLPVARP
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEECEEEEEECCCCCEEEEECCCCCC
PLKNVKMKVTAAGG
CCCCCEEEEEECCC
>Mature Secondary Structure
MRPLDLTEKDPSKRITIHFEGKPLEAYEGEKLTVALLANGIYWLTTSTEGRKRGAFTFGP
CCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEEECCEEEEEECCCCCCCCCEEECC
VPMVVNGVKNINGRKTVVKDGIRIERQNYGDFQETVEVDESKPVTRQVVDVAVIGAGPAG
HHHHHHHHCCCCCCEEEEECCEEEEECCCCCHHHHHCCCCCCCHHHEEEEEEEECCCCCC
IGAALELQEHLTVALIEERGWLGGDMWLKGLPQEGFDGEPKEVIKSLVAQFNDNVRVFRK
CCHHEEHHHCEEEEEEECCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHHHEEH
TIALGIFDKGEYFLVPIVKGDQLIELMARRVVLAVGAVDNILLFENNDIPGVFRRDFALE
HHHEEEECCCCEEEEEEECCHHHHHHHHHHHHHEECCCCEEEEEECCCCCCHHHHHHHHH
VMNVWGVAPGKKVAVVGGRPEDIVPELERWGIEYIVVPNPKRVEGTEKVEKLIDMNGNVY
HHHHHCCCCCCEEEEECCCCHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHCCCCCEE
EVDAVIVSDGRRPDINPITQAGGKLRFKRGYYMPVLDSQHRIRDGIYVAGSAVSIKPHYA
EEEEEEEECCCCCCCCHHHHCCCEEEEECCCCCCCCCCCHHHCCCEEEECCEEEECCHHH
NYLEGRLVGAYILGEFGYEAQPCVYEKKLREYEPEAITIHKIEFDAFSLEDVQICGCDVS
HHHCCEEEEEEEEECCCCCCCCHHHHHHHHHCCCCEEEEEEEEECEECCCCEEEEECCCC
LKKVDDVVRSGITDLQIIKRLTHLAMGFCQGRFCLFNGAVVVSQRANLDMAKIDLPVARP
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEECEEEEEECCCCCEEEEECCCCCC
PLKNVKMKVTAAGG
CCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]