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The map label for this gene is ychF [C]

Identifier: 212224432

GI number: 212224432

Start: 1167920

End: 1169086

Strand: Reverse

Name: ychF [C]

Synonym: TON_1283

Alternate gene names: 212224432

Gene position: 1169086-1167920 (Counterclockwise)

Preceding gene: 212224439

Following gene: 212224431

Centisome position: 63.28

GC content: 54.33

Gene sequence:

>1167_bases
ATGCCAACCAACGTAACAGCGGAGTACCTAGCAGCTGAGGAGGAATACCGGAACGCCAAGACGATTCCAGAGAAGATTCG
GGCCCTTGAGAAAATGTACTCCACCGTTCCCAAGCACAAGGGGACGGAGAAGCTCAGGCTCCAGATAAAGCGAAAGCTGG
CTGAGCTGAGGAAGGAGCTTGAAAAGCAGAGGCAGGTTCAGAAGAAGGGTGGCGGCTACTCCTTCAGCGTGAGGAAGGAG
GGTGCTGCTCAGATAGTCCTGGCTGGCCTTCCGAATGTAGGAAAGTCCTCCCTCATGAAGGCGCTGACAAACGTTGATAT
TGACGTGGCTGATTATGCCTTCACAACAGTCGAACCTATCCCTGGAATGATGCATCACAAGGATGTTCAGATACAGCTCG
TTGAGGTGCCCGGCCTCGTCGAGGGTGCCGCCCTCGGAAAGGGCATGGGGCCTCAGCTCCTGAGTGTTATAAGGAACGCC
GATGCTATAGCCATCGTCGTTGACCTCTCTCAGGATCCCGTAAAGCAGATGGAAATCCTCCTGAGAGAGTTCGAGAGGGC
GGGAATAAAGCTCAACAAGCGCCGTCCAAGGGTCGAGATAAAGAGGACAGCGAGCGGTGGAATAATCATCAACGGTCAGG
AGAACATAAAGGGCGACATAAGTGAAGTCATGAAGATGCTCCGCGAGGAGAGGATTCACTCAGCTGAGATAACCGTTAAG
GAGCCCGTGACTCTGGAGGAGTTCGCCGACGCTTTAGACGAGAGCCTCGTCTGGAGGAGGGCTATAATCATTGCTAACAA
GGGCGACGCCCCTGGAAGCAAAGAGAACTACGAGAGGCTCGTCCAGGCTTACGGAGACAGATTCAAAATCATCCCAATCT
CCGCGAGGAGGAAGATAAACCTCGACAAGCTCAAGGACGAGCTGTATGAGCTGGCTGGAATAATAAGGGTCTTCACGAAG
AGTCCCGGGGAAGAGCCGGCCTATCCCCCGGTGCCGCTCAAGAAGGGCTCAACGGTCATGGATCTGGCGGAAAGAATTCA
CAAGGACTTTGCCAAGAACTTCCGATATGCCCGTGTCTGGGGTAAGAGCGTCAAGTTCCCGGGCCAGAGGGTTGGGGCCG
ACCACGTGCTGGAGGATGGGGACATAGTGGAGATTCACGCACGATAA

Upstream 100 bases:

>100_bases
AAAATTTTCGGATGATTATATAAACTTGGCGATTTTAGAGAACCATACTTTTATAAAACGCCATCCGCTCTTTAATCCAG
AGGCTTCTGGAGGGTCAGCC

Downstream 100 bases:

>100_bases
TGTTAGCTCGTTTCTTTCTTGTGTGTTGTTTATATGTCATTCCTTTAGTCATCGGGATGTTTTTAATGGTCTGAGGCAGG
TGGAGGATAATTGCTCCCAC

Product: GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 388; Mature: 387

Protein sequence:

>388_residues
MPTNVTAEYLAAEEEYRNAKTIPEKIRALEKMYSTVPKHKGTEKLRLQIKRKLAELRKELEKQRQVQKKGGGYSFSVRKE
GAAQIVLAGLPNVGKSSLMKALTNVDIDVADYAFTTVEPIPGMMHHKDVQIQLVEVPGLVEGAALGKGMGPQLLSVIRNA
DAIAIVVDLSQDPVKQMEILLREFERAGIKLNKRRPRVEIKRTASGGIIINGQENIKGDISEVMKMLREERIHSAEITVK
EPVTLEEFADALDESLVWRRAIIIANKGDAPGSKENYERLVQAYGDRFKIIPISARRKINLDKLKDELYELAGIIRVFTK
SPGEEPAYPPVPLKKGSTVMDLAERIHKDFAKNFRYARVWGKSVKFPGQRVGADHVLEDGDIVEIHAR

Sequences:

>Translated_388_residues
MPTNVTAEYLAAEEEYRNAKTIPEKIRALEKMYSTVPKHKGTEKLRLQIKRKLAELRKELEKQRQVQKKGGGYSFSVRKE
GAAQIVLAGLPNVGKSSLMKALTNVDIDVADYAFTTVEPIPGMMHHKDVQIQLVEVPGLVEGAALGKGMGPQLLSVIRNA
DAIAIVVDLSQDPVKQMEILLREFERAGIKLNKRRPRVEIKRTASGGIIINGQENIKGDISEVMKMLREERIHSAEITVK
EPVTLEEFADALDESLVWRRAIIIANKGDAPGSKENYERLVQAYGDRFKIIPISARRKINLDKLKDELYELAGIIRVFTK
SPGEEPAYPPVPLKKGSTVMDLAERIHKDFAKNFRYARVWGKSVKFPGQRVGADHVLEDGDIVEIHAR
>Mature_387_residues
PTNVTAEYLAAEEEYRNAKTIPEKIRALEKMYSTVPKHKGTEKLRLQIKRKLAELRKELEKQRQVQKKGGGYSFSVRKEG
AAQIVLAGLPNVGKSSLMKALTNVDIDVADYAFTTVEPIPGMMHHKDVQIQLVEVPGLVEGAALGKGMGPQLLSVIRNAD
AIAIVVDLSQDPVKQMEILLREFERAGIKLNKRRPRVEIKRTASGGIIINGQENIKGDISEVMKMLREERIHSAEITVKE
PVTLEEFADALDESLVWRRAIIIANKGDAPGSKENYERLVQAYGDRFKIIPISARRKINLDKLKDELYELAGIIRVFTKS
PGEEPAYPPVPLKKGSTVMDLAERIHKDFAKNFRYARVWGKSVKFPGQRVGADHVLEDGDIVEIHAR

Specific function: Unknown

COG id: COG1163

COG function: function code R; Predicted GTPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI4557537, Length=368, Percent_Identity=36.6847826086957, Blast_Score=223, Evalue=2e-58,
Organism=Homo sapiens, GI4758796, Length=364, Percent_Identity=35.989010989011, Blast_Score=209, Evalue=3e-54,
Organism=Homo sapiens, GI24308117, Length=105, Percent_Identity=39.0476190476191, Blast_Score=78, Evalue=2e-14,
Organism=Homo sapiens, GI111955139, Length=89, Percent_Identity=42.6966292134831, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI111955063, Length=82, Percent_Identity=42.6829268292683, Blast_Score=73, Evalue=5e-13,
Organism=Escherichia coli, GI1787454, Length=367, Percent_Identity=22.8882833787466, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1789574, Length=109, Percent_Identity=33.0275229357798, Blast_Score=67, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71981008, Length=370, Percent_Identity=34.8648648648649, Blast_Score=218, Evalue=4e-57,
Organism=Caenorhabditis elegans, GI17555344, Length=371, Percent_Identity=36.3881401617251, Blast_Score=206, Evalue=1e-53,
Organism=Caenorhabditis elegans, GI17552324, Length=184, Percent_Identity=29.3478260869565, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17508313, Length=97, Percent_Identity=37.1134020618557, Blast_Score=73, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6321612, Length=372, Percent_Identity=33.6021505376344, Blast_Score=211, Evalue=2e-55,
Organism=Saccharomyces cerevisiae, GI6319281, Length=374, Percent_Identity=35.5614973262032, Blast_Score=202, Evalue=1e-52,
Organism=Saccharomyces cerevisiae, GI6321962, Length=105, Percent_Identity=33.3333333333333, Blast_Score=70, Evalue=4e-13,
Organism=Drosophila melanogaster, GI21356473, Length=366, Percent_Identity=36.3387978142077, Blast_Score=229, Evalue=2e-60,
Organism=Drosophila melanogaster, GI17981711, Length=370, Percent_Identity=35.6756756756757, Blast_Score=216, Evalue=2e-56,
Organism=Drosophila melanogaster, GI20129375, Length=128, Percent_Identity=35.9375, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24585318, Length=88, Percent_Identity=38.6363636363636, Blast_Score=70, Evalue=4e-12,

Paralogues:

None

Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006074
- InterPro:   IPR006073
- InterPro:   IPR002917
- InterPro:   IPR005225
- InterPro:   IPR004095 [H]

Pfam domain/function: PF01926 MMR_HSR1; PF02824 TGS [H]

EC number: NA

Molecular weight: Translated: 43487; Mature: 43356

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTNVTAEYLAAEEEYRNAKTIPEKIRALEKMYSTVPKHKGTEKLRLQIKRKLAELRKEL
CCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
EKQRQVQKKGGGYSFSVRKEGAAQIVLAGLPNVGKSSLMKALTNVDIDVADYAFTTVEPI
HHHHHHHHCCCCEEEEEECCCCEEEEEECCCCCCHHHHHHHHHCCCCCHHHHHHEECCCC
PGMMHHKDVQIQLVEVPGLVEGAALGKGMGPQLLSVIRNADAIAIVVDLSQDPVKQMEIL
CCCCCCCCCEEEEEECCCCHHHHHHCCCCCHHHHHHHHCCCEEEEEEECCCCHHHHHHHH
LREFERAGIKLNKRRPRVEIKRTASGGIIINGQENIKGDISEVMKMLREERIHSAEITVK
HHHHHHCCCEEECCCCCEEEEEECCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEE
EPVTLEEFADALDESLVWRRAIIIANKGDAPGSKENYERLVQAYGDRFKIIPISARRKIN
CCCCHHHHHHHHHHHHHHHEEEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCC
LDKLKDELYELAGIIRVFTKSPGEEPAYPPVPLKKGSTVMDLAERIHKDFAKNFRYARVW
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEECC
GKSVKFPGQRVGADHVLEDGDIVEIHAR
CCCCCCCCCCCCHHHEECCCCEEEEECC
>Mature Secondary Structure 
PTNVTAEYLAAEEEYRNAKTIPEKIRALEKMYSTVPKHKGTEKLRLQIKRKLAELRKEL
CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
EKQRQVQKKGGGYSFSVRKEGAAQIVLAGLPNVGKSSLMKALTNVDIDVADYAFTTVEPI
HHHHHHHHCCCCEEEEEECCCCEEEEEECCCCCCHHHHHHHHHCCCCCHHHHHHEECCCC
PGMMHHKDVQIQLVEVPGLVEGAALGKGMGPQLLSVIRNADAIAIVVDLSQDPVKQMEIL
CCCCCCCCCEEEEEECCCCHHHHHHCCCCCHHHHHHHHCCCEEEEEEECCCCHHHHHHHH
LREFERAGIKLNKRRPRVEIKRTASGGIIINGQENIKGDISEVMKMLREERIHSAEITVK
HHHHHHCCCEEECCCCCEEEEEECCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEE
EPVTLEEFADALDESLVWRRAIIIANKGDAPGSKENYERLVQAYGDRFKIIPISARRKIN
CCCCHHHHHHHHHHHHHHHEEEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCC
LDKLKDELYELAGIIRVFTKSPGEEPAYPPVPLKKGSTVMDLAERIHKDFAKNFRYARVW
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEECC
GKSVKFPGQRVGADHVLEDGDIVEIHAR
CCCCCCCCCCCCHHHEECCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]