| Definition | Thermococcus onnurineus NA1, complete genome. |
|---|---|
| Accession | NC_011529 |
| Length | 1,847,607 |
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The map label for this gene is 212223318
Identifier: 212223318
GI number: 212223318
Start: 148982
End: 151303
Strand: Reverse
Name: 212223318
Synonym: TON_0172
Alternate gene names: NA
Gene position: 151303-148982 (Counterclockwise)
Preceding gene: 212223319
Following gene: 212223315
Centisome position: 8.19
GC content: 48.02
Gene sequence:
>2322_bases ATGGCCGTGGAGGATAAAAAGCCTAAAAAGAAAGCGGAAGAAGTCGAGGGGGTTGTGCTCGAAAAGATCCGGGTACTGCC TCCTTCGCTCGAACGCCTCGTAACCATAGCAGCGATTCTTATAGGCATCTACGAAATACTGTTTATATTCAACTTCAATT ACACACTATACGACATGTTTTCCCGTATGGGTATCGAAATAAGTTTTCTGAAGACGACGTTCCAAACAAAACAGGGAGAA GCATTTGTTTTGGCCATGATACTCTTTATTACGTTTATGCTCTACCCAATTCGTAAGAAAGAGAAATACCTGAAAAAGGT ACCAATTTATGACTATGTACTGGCAGCTCTCGGAGTTATCTCATCACTATACCTGTTTGCAGTTTACCAACGCTACGCTG AGTTCGCCGAAGTAACACAGACCGATGTCATATTTGGCATTATGGCAATAATTCTCGTCCTTGAAGCGACACGTAGAGTC CTCGGATGGGTTCTGCCACTCGTTGTCACAGTATTTCTGCTATACGGAATCAACAACATAGGCTTCAACTGGATACGATT TACCCAGCAACTCTACTTTGATGAAGGAATCTTTGGAATTCCGTTCTTCGTCATGACAATATACGTATTTGCTTTCGTGT TCTTTGGAGCATTCCTTCTCAGGATAGGCATCAGCGACTACATTACCGAATTCATGATAGCGCTTTTCGGTTCCCGTCCG GGTGGACCTGCAAAGGCCGCCGTTGTTTCAAGTGGCCTCATGGGAACCGTCAGCGGATCTAGTGTTGCAAACGTCCTCAC AACTGGAACTTTCACGATACCCCTCATGAAAAAAGCTGGATATCCCCCCGAGATAGCCGGTGCCGTTGAGCCGGTTGCAT CAACAGGCGGACAGCTGATGCCTCCAATAATGGGTGCAGCAGCATTCATAATGGCCGAGTTCCTTGGAATACCATACAAC AAGTTGATAATAGCTGCCGTCATCCCCGCTCTCGTGTATTATTCCGGCGTCTACATCTTCATAGACCTCGAGACTAAAAG GCTTGGACTCAAGAGCATGGCAGTTGAAGAGTCAAAGAAGCTCGGGTATTTCCTCAGAAAGCTCTATATCCTCTTGCCCG TAGCAGTCATTACAGTCGCTCTCGTCTGGGGAATCCCACCCCACATATCTGCCATCTCATCCCTTGGAATTGCCATTTGG GTAGCCTGGATCGCTAGGGACGAGATAAATGGTCACGAAGGGTTCTATGTCGGCATTGTCCTCCTAACGACTCTCATGAT GTTTACAGGAAAGTCAATGACAGGACTTGTTGCGGGTCTTTTAGTGGTTCTCTCGCTTGTACTGGTGGGCCTAGCGTTTA TGACGGACCTAGTAGACTTCAACGAAAAACTCTATATCAGCCTGATGTTCATACTTTTCATAGCCCTCACCAAGCATCTC GGAATGACCAAGGAGCAGATACTGCTGATGAGCGGTGTCATGGGAATTGCCTTCTCTCTCATCGTGGGATACATATCCAA TAGTGAAGAGGGCAGGCGGATGTACTCGGCGACTTATGAGTCAGTCATTGACGCAGGCAAAACCAGTACCAGCGTCATGC TAGCAGCAGCTTCTGCAGGCTTGATTCAGGGAGTTCTAACAATGACCGGCCTCGTTACCCGCATTGGATATCGCCTCGTT GATTTGACTGCCGGGAACCTATTACTGCTGCTGATCCTTACTATGGTATTCAGCCTCATCCTAGGAATGGGAGTTCCTAC GACCGCCAACTACATTATCACCTCTCTAGTTGCGGCACCTGCTATTTTCAATGCGGTTCAAAGTGTTGCCCCGTACGACC AGCCAGTTCCAGGCTTCGCCACTGCGATAGCTCTTCTCGCGGCGCACTTCTTCGTCTTCTACTTTGGTATACTAGCAGAC GTCACTCCACCGGTTGCCCTAGCAAGCTACGCAGGTTCAGCTTTAGCTGGTGGAGACTTTTGGAAGACTGCCATGAACGC GGTCAAGTACGCCTTAGCTGGCTACATAGGACCCTACATCTATTTCACTCACCCGGAGATGTTCCTGATAACGGTTCCAG AATGGAACATTGCAACGGCAATCAGGGTGCTCTATTACCTCCTGGCGACTCTGTTCATAATGTACCTGCTGGCGATAGCA CTGACTGGATTCTATAAGACACACCTGAAGAAGTGGGTTAGAATAATACTAGTGGTCATTGGGCTAGCAGGAGTGACACT GAACCCAATAATCATTGGGACAGGAGTCGCTGCTTGGCTTGGCCTGAAGTTCTACGGAGTCAGAGTTTCTGCGGGGGCAT AG
Upstream 100 bases:
>100_bases GTAAATGGGAAGTTAGTTTTTTCACCCAGACGAGAAACCCTTGTTGAATTTGAGGTTAAGGAATGCAGTCTGTTCGAGAT AGCGATTGGGAGGTGTTAAA
Downstream 100 bases:
>100_bases CCCCCTCAATCCTCTATCATTTCGTTCATTGTTTTTATTATTTCCTCGGAGGTTCTCGTAATCTGAGTGGCGGCATCGCT GGCCGTTCTTTGGGCTATCC
Product: TRAP-type transporter
Products: NA
Alternate protein names: Trap Transporter 4tm/12tm Fusion Protein; TRAP Transporter; TRAP-Type Transport System Fused Permease Component; TRAP-Type Transport System Permease Protein; TRAP-Type Transport System Permease Component; TRAP-Type Transporter 4TM/12TM Fusion Protein; TRAP-Type Transporter Fused Permease Components; TRAP-T Family Transporter With Fused DctQ/DctM Subunits; Inner Membrane Protein; TRAP-Type Transporter Permease Component; Permease; TRAP-Type Transport System Permease; TRAP Transporter Large Permease; TRAP Transporter 4TM/12TM Fusion Family; TRAP-Type Transporter Fused Permeases; C4-Dicarboxylate Transporter; TRAP Type Transporter Protein; TRAP-T Family Transporter Fused Inner Membrane Subunits; TRAP Transporter Transmembrane Protein; Integral Membrane Protein; Transcriptional Regulator DeoR Family; Trap Family Transporter; N-Carbamoyl-L-Amino Acid Hydrolase; TRAP-Type Transporter; TRAP-Type Transport System Fused Permease Components; 4TM/12TM TRAP Transporter; TRAP-Type Transport System; TRAP Transporter Membrane-Spanning Component
Number of amino acids: Translated: 773; Mature: 772
Protein sequence:
>773_residues MAVEDKKPKKKAEEVEGVVLEKIRVLPPSLERLVTIAAILIGIYEILFIFNFNYTLYDMFSRMGIEISFLKTTFQTKQGE AFVLAMILFITFMLYPIRKKEKYLKKVPIYDYVLAALGVISSLYLFAVYQRYAEFAEVTQTDVIFGIMAIILVLEATRRV LGWVLPLVVTVFLLYGINNIGFNWIRFTQQLYFDEGIFGIPFFVMTIYVFAFVFFGAFLLRIGISDYITEFMIALFGSRP GGPAKAAVVSSGLMGTVSGSSVANVLTTGTFTIPLMKKAGYPPEIAGAVEPVASTGGQLMPPIMGAAAFIMAEFLGIPYN KLIIAAVIPALVYYSGVYIFIDLETKRLGLKSMAVEESKKLGYFLRKLYILLPVAVITVALVWGIPPHISAISSLGIAIW VAWIARDEINGHEGFYVGIVLLTTLMMFTGKSMTGLVAGLLVVLSLVLVGLAFMTDLVDFNEKLYISLMFILFIALTKHL GMTKEQILLMSGVMGIAFSLIVGYISNSEEGRRMYSATYESVIDAGKTSTSVMLAAASAGLIQGVLTMTGLVTRIGYRLV DLTAGNLLLLLILTMVFSLILGMGVPTTANYIITSLVAAPAIFNAVQSVAPYDQPVPGFATAIALLAAHFFVFYFGILAD VTPPVALASYAGSALAGGDFWKTAMNAVKYALAGYIGPYIYFTHPEMFLITVPEWNIATAIRVLYYLLATLFIMYLLAIA LTGFYKTHLKKWVRIILVVIGLAGVTLNPIIIGTGVAAWLGLKFYGVRVSAGA
Sequences:
>Translated_773_residues MAVEDKKPKKKAEEVEGVVLEKIRVLPPSLERLVTIAAILIGIYEILFIFNFNYTLYDMFSRMGIEISFLKTTFQTKQGE AFVLAMILFITFMLYPIRKKEKYLKKVPIYDYVLAALGVISSLYLFAVYQRYAEFAEVTQTDVIFGIMAIILVLEATRRV LGWVLPLVVTVFLLYGINNIGFNWIRFTQQLYFDEGIFGIPFFVMTIYVFAFVFFGAFLLRIGISDYITEFMIALFGSRP GGPAKAAVVSSGLMGTVSGSSVANVLTTGTFTIPLMKKAGYPPEIAGAVEPVASTGGQLMPPIMGAAAFIMAEFLGIPYN KLIIAAVIPALVYYSGVYIFIDLETKRLGLKSMAVEESKKLGYFLRKLYILLPVAVITVALVWGIPPHISAISSLGIAIW VAWIARDEINGHEGFYVGIVLLTTLMMFTGKSMTGLVAGLLVVLSLVLVGLAFMTDLVDFNEKLYISLMFILFIALTKHL GMTKEQILLMSGVMGIAFSLIVGYISNSEEGRRMYSATYESVIDAGKTSTSVMLAAASAGLIQGVLTMTGLVTRIGYRLV DLTAGNLLLLLILTMVFSLILGMGVPTTANYIITSLVAAPAIFNAVQSVAPYDQPVPGFATAIALLAAHFFVFYFGILAD VTPPVALASYAGSALAGGDFWKTAMNAVKYALAGYIGPYIYFTHPEMFLITVPEWNIATAIRVLYYLLATLFIMYLLAIA LTGFYKTHLKKWVRIILVVIGLAGVTLNPIIIGTGVAAWLGLKFYGVRVSAGA >Mature_772_residues AVEDKKPKKKAEEVEGVVLEKIRVLPPSLERLVTIAAILIGIYEILFIFNFNYTLYDMFSRMGIEISFLKTTFQTKQGEA FVLAMILFITFMLYPIRKKEKYLKKVPIYDYVLAALGVISSLYLFAVYQRYAEFAEVTQTDVIFGIMAIILVLEATRRVL GWVLPLVVTVFLLYGINNIGFNWIRFTQQLYFDEGIFGIPFFVMTIYVFAFVFFGAFLLRIGISDYITEFMIALFGSRPG GPAKAAVVSSGLMGTVSGSSVANVLTTGTFTIPLMKKAGYPPEIAGAVEPVASTGGQLMPPIMGAAAFIMAEFLGIPYNK LIIAAVIPALVYYSGVYIFIDLETKRLGLKSMAVEESKKLGYFLRKLYILLPVAVITVALVWGIPPHISAISSLGIAIWV AWIARDEINGHEGFYVGIVLLTTLMMFTGKSMTGLVAGLLVVLSLVLVGLAFMTDLVDFNEKLYISLMFILFIALTKHLG MTKEQILLMSGVMGIAFSLIVGYISNSEEGRRMYSATYESVIDAGKTSTSVMLAAASAGLIQGVLTMTGLVTRIGYRLVD LTAGNLLLLLILTMVFSLILGMGVPTTANYIITSLVAAPAIFNAVQSVAPYDQPVPGFATAIALLAAHFFVFYFGILADV TPPVALASYAGSALAGGDFWKTAMNAVKYALAGYIGPYIYFTHPEMFLITVPEWNIATAIRVLYYLLATLFIMYLLAIAL TGFYKTHLKKWVRIILVVIGLAGVTLNPIIIGTGVAAWLGLKFYGVRVSAGA
Specific function: Unknown
COG id: COG4666
COG function: function code R; TRAP-type uncharacterized transport system, fused permease components
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 84468; Mature: 84337
Theoretical pI: Translated: 9.35; Mature: 9.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVEDKKPKKKAEEVEGVVLEKIRVLPPSLERLVTIAAILIGIYEILFIFNFNYTLYDMF CCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH SRMGIEISFLKTTFQTKQGEAFVLAMILFITFMLYPIRKKEKYLKKVPIYDYVLAALGVI HHHCCEEEEHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH SSLYLFAVYQRYAEFAEVTQTDVIFGIMAIILVLEATRRVLGWVLPLVVTVFLLYGINNI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC GFNWIRFTQQLYFDEGIFGIPFFVMTIYVFAFVFFGAFLLRIGISDYITEFMIALFGSRP CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC GGPAKAAVVSSGLMGTVSGSSVANVLTTGTFTIPLMKKAGYPPEIAGAVEPVASTGGQLM CCCHHHHHHHCCCCCCCCCCHHHHHHHCCCEEEEHHHHCCCCCCHHHHHHHHHHCCCCCC PPIMGAAAFIMAEFLGIPYNKLIIAAVIPALVYYSGVYIFIDLETKRLGLKSMAVEESKK CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCEEEEEEECHHHHCHHHHHHHHHHH LGYFLRKLYILLPVAVITVALVWGIPPHISAISSLGIAIWVAWIARDEINGHEGFYVGIV HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH LLTTLMMFTGKSMTGLVAGLLVVLSLVLVGLAFMTDLVDFNEKLYISLMFILFIALTKHL HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH GMTKEQILLMSGVMGIAFSLIVGYISNSEEGRRMYSATYESVIDAGKTSTSVMLAAASAG CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH LIQGVLTMTGLVTRIGYRLVDLTAGNLLLLLILTMVFSLILGMGVPTTANYIITSLVAAP HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH AIFNAVQSVAPYDQPVPGFATAIALLAAHFFVFYFGILADVTPPVALASYAGSALAGGDF HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCHH WKTAMNAVKYALAGYIGPYIYFTHPEMFLITVPEWNIATAIRVLYYLLATLFIMYLLAIA HHHHHHHHHHHHHHHHCCEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH LTGFYKTHLKKWVRIILVVIGLAGVTLNPIIIGTGVAAWLGLKFYGVRVSAGA HHHHHHHHHHHHHHHHHHHHHHHCCEECCEEEHHHHHHHHHHHHEEEEEECCC >Mature Secondary Structure AVEDKKPKKKAEEVEGVVLEKIRVLPPSLERLVTIAAILIGIYEILFIFNFNYTLYDMF CCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH SRMGIEISFLKTTFQTKQGEAFVLAMILFITFMLYPIRKKEKYLKKVPIYDYVLAALGVI HHHCCEEEEHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH SSLYLFAVYQRYAEFAEVTQTDVIFGIMAIILVLEATRRVLGWVLPLVVTVFLLYGINNI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC GFNWIRFTQQLYFDEGIFGIPFFVMTIYVFAFVFFGAFLLRIGISDYITEFMIALFGSRP CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC GGPAKAAVVSSGLMGTVSGSSVANVLTTGTFTIPLMKKAGYPPEIAGAVEPVASTGGQLM CCCHHHHHHHCCCCCCCCCCHHHHHHHCCCEEEEHHHHCCCCCCHHHHHHHHHHCCCCCC PPIMGAAAFIMAEFLGIPYNKLIIAAVIPALVYYSGVYIFIDLETKRLGLKSMAVEESKK CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCEEEEEEECHHHHCHHHHHHHHHHH LGYFLRKLYILLPVAVITVALVWGIPPHISAISSLGIAIWVAWIARDEINGHEGFYVGIV HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH LLTTLMMFTGKSMTGLVAGLLVVLSLVLVGLAFMTDLVDFNEKLYISLMFILFIALTKHL HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH GMTKEQILLMSGVMGIAFSLIVGYISNSEEGRRMYSATYESVIDAGKTSTSVMLAAASAG CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH LIQGVLTMTGLVTRIGYRLVDLTAGNLLLLLILTMVFSLILGMGVPTTANYIITSLVAAP HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH AIFNAVQSVAPYDQPVPGFATAIALLAAHFFVFYFGILADVTPPVALASYAGSALAGGDF HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCHH WKTAMNAVKYALAGYIGPYIYFTHPEMFLITVPEWNIATAIRVLYYLLATLFIMYLLAIA HHHHHHHHHHHHHHHHCCEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH LTGFYKTHLKKWVRIILVVIGLAGVTLNPIIIGTGVAAWLGLKFYGVRVSAGA HHHHHHHHHHHHHHHHHHHHHHHCCEECCEEEHHHHHHHHHHHHEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA