BacMap

Definition	Rhizobium leguminosarum bv. trifolii WSM2304 chromosome, complete genome.
Accession	NC_011369
Length	4,537,948

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The map label for this gene is gdhB [H]

Identifier: 209551923

GI number: 209551923

Start: 4521856

End: 4522620

Strand: Reverse

Name: gdhB [H]

Synonym: Rleg2_4356

Alternate gene names: 209551923

Gene position: 4522620-4521856 (Counterclockwise)

Preceding gene: 209551927

Following gene: 209551922

Centisome position: 99.66

GC content: 64.05

Gene sequence:

>765_bases
ATGAACCGCTTGATCAACAAGGTCGCAATCGTCACCGGCGCAAGCTCCGGCATCGGCCGCGTCACAGCAAAACTCTTTGC
CGCCGAAGGCGCCAAGGTCGTCGTCGGCGCCCGCCGCGAGCGCGAACTCGACAGCCTCGTCGCGGAAATCAAGGCAGAGG
GCGGCGACGCCATTGCTGTTGCCGGCGATGTCCGCTCCGAAGATTACCACAAGGCGCTGGTCGCCGCGGCCGTGACCCAT
TACGGCAAGCTCGACATCGCCTTCAACAATGCCGGCATCATCGGCGAAGCCGGCCCGAGCACCGGTGTTTCGGAAGCAGG
CTTCAGCGAGGCGCTTGATGTCAATCTCACGGCATCCTTTCTCGCTGCCAAACATCAGATCGGCGCGATGGCCGAAAATG
GCGGCGGCTCGGTGATCTTCACCTCGACCTTCGTCGGCTACAGCTTCGCCTTTCCGGGCGTCGCCGCTTATGCCGCCAGC
AAATCCGGCCTGATCGGCCTGACGCAGGCGCTCGCCGCCGAATTTGGGCCGCAGGGTGTGCGCATCAACGCTGTCCTGCC
GGGCGCGGTCGATACCGACATGTATCGGGACATGAACGATACGGCGGAGAAGCAGGCTGCCCTCAGCAGTATGCATGCGC
TGAAGCGTGTCGCGACGCCGGACGAGATTGCCCGCTCGGTTCTCTACCTCGCCTCCGACGATGCGAGCTTCGTCACCGGC
ACGGCTTCGCTGGTCGACGGCGGCATTTCGATCACCCGCAGCTGA

Upstream 100 bases:

>100_bases
CCCAATCTGGAGACTAATCCGAACGAAAGGAAAATGCCATCTTCCATTCAACGGAAGAGACGGCAGGGGCCGCCTCGCTG
CCAACACAGGAGATGGAACC

Downstream 100 bases:

>100_bases
GACGACGCGACATGATTATAGCCGGCGGGTTGGTGATCTCTCTCCAATCCGCCGGCCGCGGCAACCGGCCAGACCAGGCG
GGGCGAGCGCATGTCGCCGG

Product: short chain dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MNRLINKVAIVTGASSGIGRVTAKLFAAEGAKVVVGARRERELDSLVAEIKAEGGDAIAVAGDVRSEDYHKALVAAAVTH
YGKLDIAFNNAGIIGEAGPSTGVSEAGFSEALDVNLTASFLAAKHQIGAMAENGGGSVIFTSTFVGYSFAFPGVAAYAAS
KSGLIGLTQALAAEFGPQGVRINAVLPGAVDTDMYRDMNDTAEKQAALSSMHALKRVATPDEIARSVLYLASDDASFVTG
TASLVDGGISITRS

Sequences:

>Translated_254_residues
MNRLINKVAIVTGASSGIGRVTAKLFAAEGAKVVVGARRERELDSLVAEIKAEGGDAIAVAGDVRSEDYHKALVAAAVTH
YGKLDIAFNNAGIIGEAGPSTGVSEAGFSEALDVNLTASFLAAKHQIGAMAENGGGSVIFTSTFVGYSFAFPGVAAYAAS
KSGLIGLTQALAAEFGPQGVRINAVLPGAVDTDMYRDMNDTAEKQAALSSMHALKRVATPDEIARSVLYLASDDASFVTG
TASLVDGGISITRS
>Mature_254_residues
MNRLINKVAIVTGASSGIGRVTAKLFAAEGAKVVVGARRERELDSLVAEIKAEGGDAIAVAGDVRSEDYHKALVAAAVTH
YGKLDIAFNNAGIIGEAGPSTGVSEAGFSEALDVNLTASFLAAKHQIGAMAENGGGSVIFTSTFVGYSFAFPGVAAYAAS
KSGLIGLTQALAAEFGPQGVRINAVLPGAVDTDMYRDMNDTAEKQAALSSMHALKRVATPDEIARSVLYLASDDASFVTG
TASLVDGGISITRS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=249, Percent_Identity=36.144578313253, Blast_Score=155, Evalue=4e-38,
Organism=Homo sapiens, GI5031737, Length=243, Percent_Identity=35.3909465020576, Blast_Score=135, Evalue=4e-32,
Organism=Homo sapiens, GI126723750, Length=254, Percent_Identity=32.2834645669291, Blast_Score=125, Evalue=3e-29,
Organism=Homo sapiens, GI33667109, Length=199, Percent_Identity=37.1859296482412, Blast_Score=115, Evalue=3e-26,
Organism=Homo sapiens, GI19923817, Length=256, Percent_Identity=30.078125, Blast_Score=115, Evalue=4e-26,
Organism=Homo sapiens, GI126723191, Length=186, Percent_Identity=36.5591397849462, Blast_Score=113, Evalue=2e-25,
Organism=Homo sapiens, GI40254992, Length=247, Percent_Identity=32.3886639676113, Blast_Score=108, Evalue=6e-24,
Organism=Homo sapiens, GI15277342, Length=257, Percent_Identity=32.6848249027237, Blast_Score=100, Evalue=9e-22,
Organism=Homo sapiens, GI10190704, Length=258, Percent_Identity=31.7829457364341, Blast_Score=99, Evalue=5e-21,
Organism=Homo sapiens, GI66933014, Length=255, Percent_Identity=31.3725490196078, Blast_Score=98, Evalue=7e-21,
Organism=Homo sapiens, GI59889578, Length=231, Percent_Identity=28.5714285714286, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI109715829, Length=251, Percent_Identity=29.0836653386454, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI7705925, Length=243, Percent_Identity=30.4526748971193, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI31542939, Length=247, Percent_Identity=29.1497975708502, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI4758504, Length=259, Percent_Identity=28.957528957529, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI4503817, Length=225, Percent_Identity=28.4444444444444, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI4504505, Length=246, Percent_Identity=29.6747967479675, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI4503301, Length=258, Percent_Identity=26.7441860465116, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI302344755, Length=109, Percent_Identity=34.8623853211009, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI302344752, Length=168, Percent_Identity=29.1666666666667, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI7706318, Length=196, Percent_Identity=26.0204081632653, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI83715985, Length=259, Percent_Identity=28.1853281853282, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI20149619, Length=200, Percent_Identity=28.5, Blast_Score=65, Evalue=7e-11,
Organism=Homo sapiens, GI142976729, Length=232, Percent_Identity=25.4310344827586, Blast_Score=65, Evalue=7e-11,
Organism=Escherichia coli, GI87082100, Length=260, Percent_Identity=31.1538461538462, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1787335, Length=244, Percent_Identity=34.0163934426229, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1787905, Length=247, Percent_Identity=34.8178137651822, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI2367175, Length=241, Percent_Identity=32.3651452282158, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI2367365, Length=253, Percent_Identity=33.9920948616601, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1789378, Length=248, Percent_Identity=31.4516129032258, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI1787526, Length=241, Percent_Identity=30.7053941908714, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1789208, Length=246, Percent_Identity=28.8617886178862, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1788459, Length=246, Percent_Identity=30.4878048780488, Blast_Score=97, Evalue=9e-22,
Organism=Escherichia coli, GI1790717, Length=258, Percent_Identity=27.906976744186, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1786812, Length=253, Percent_Identity=30.0395256916996, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI87082160, Length=248, Percent_Identity=28.6290322580645, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1786701, Length=204, Percent_Identity=28.4313725490196, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787820, Length=242, Percent_Identity=23.5537190082645, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1789057, Length=257, Percent_Identity=26.4591439688716, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787545, Length=263, Percent_Identity=26.9961977186312, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788891, Length=233, Percent_Identity=33.4763948497854, Blast_Score=62, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17561402, Length=252, Percent_Identity=36.9047619047619, Blast_Score=155, Evalue=1e-38,
Organism=Caenorhabditis elegans, GI17560676, Length=247, Percent_Identity=32.7935222672065, Blast_Score=140, Evalue=8e-34,
Organism=Caenorhabditis elegans, GI71994604, Length=248, Percent_Identity=34.6774193548387, Blast_Score=125, Evalue=2e-29,
Organism=Caenorhabditis elegans, GI71994600, Length=249, Percent_Identity=34.9397590361446, Blast_Score=125, Evalue=2e-29,
Organism=Caenorhabditis elegans, GI17562910, Length=267, Percent_Identity=34.0823970037453, Blast_Score=115, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI17544670, Length=266, Percent_Identity=30.0751879699248, Blast_Score=111, Evalue=4e-25,
Organism=Caenorhabditis elegans, GI17555706, Length=250, Percent_Identity=35.2, Blast_Score=111, Evalue=4e-25,
Organism=Caenorhabditis elegans, GI17560332, Length=270, Percent_Identity=31.4814814814815, Blast_Score=108, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17531453, Length=271, Percent_Identity=32.4723247232472, Blast_Score=108, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI115534694, Length=251, Percent_Identity=33.0677290836653, Blast_Score=106, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI17562908, Length=268, Percent_Identity=32.8358208955224, Blast_Score=105, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI25147288, Length=251, Percent_Identity=35.0597609561753, Blast_Score=104, Evalue=5e-23,
Organism=Caenorhabditis elegans, GI17562904, Length=265, Percent_Identity=30.9433962264151, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17559104, Length=265, Percent_Identity=30.5660377358491, Blast_Score=101, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI17538480, Length=264, Percent_Identity=30.6818181818182, Blast_Score=96, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI72000259, Length=263, Percent_Identity=28.8973384030418, Blast_Score=95, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17562906, Length=273, Percent_Identity=31.8681318681319, Blast_Score=95, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI17551412, Length=270, Percent_Identity=28.5185185185185, Blast_Score=94, Evalue=8e-20,
Organism=Caenorhabditis elegans, GI193204405, Length=269, Percent_Identity=30.4832713754647, Blast_Score=94, Evalue=9e-20,
Organism=Caenorhabditis elegans, GI17560220, Length=269, Percent_Identity=30.1115241635688, Blast_Score=91, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI17563726, Length=263, Percent_Identity=27.7566539923954, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17560150, Length=260, Percent_Identity=28.4615384615385, Blast_Score=87, Evalue=8e-18,
Organism=Caenorhabditis elegans, GI17568967, Length=244, Percent_Identity=31.5573770491803, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17536651, Length=252, Percent_Identity=30.952380952381, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17565030, Length=273, Percent_Identity=31.1355311355311, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17562990, Length=266, Percent_Identity=28.9473684210526, Blast_Score=84, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI17508651, Length=252, Percent_Identity=27.7777777777778, Blast_Score=84, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI17536025, Length=260, Percent_Identity=31.1538461538462, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17538486, Length=266, Percent_Identity=29.6992481203008, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17538182, Length=254, Percent_Identity=27.1653543307087, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17508895, Length=195, Percent_Identity=28.2051282051282, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17564282, Length=195, Percent_Identity=30.7692307692308, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71982365, Length=193, Percent_Identity=27.4611398963731, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI193203115, Length=191, Percent_Identity=26.7015706806283, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI193203117, Length=198, Percent_Identity=27.7777777777778, Blast_Score=66, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6324126, Length=252, Percent_Identity=31.7460317460317, Blast_Score=100, Evalue=2e-22,
Organism=Saccharomyces cerevisiae, GI6322861, Length=237, Percent_Identity=29.535864978903, Blast_Score=87, Evalue=3e-18,
Organism=Saccharomyces cerevisiae, GI6322226, Length=194, Percent_Identity=34.020618556701, Blast_Score=68, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6323882, Length=197, Percent_Identity=27.4111675126904, Blast_Score=62, Evalue=7e-11,
Organism=Drosophila melanogaster, GI21355319, Length=252, Percent_Identity=33.7301587301587, Blast_Score=145, Evalue=2e-35,
Organism=Drosophila melanogaster, GI21357041, Length=253, Percent_Identity=35.1778656126482, Blast_Score=126, Evalue=1e-29,
Organism=Drosophila melanogaster, GI28571526, Length=257, Percent_Identity=34.6303501945525, Blast_Score=122, Evalue=2e-28,
Organism=Drosophila melanogaster, GI24639444, Length=249, Percent_Identity=35.3413654618474, Blast_Score=120, Evalue=1e-27,
Organism=Drosophila melanogaster, GI23397609, Length=251, Percent_Identity=36.2549800796813, Blast_Score=119, Evalue=2e-27,
Organism=Drosophila melanogaster, GI24644339, Length=247, Percent_Identity=34.8178137651822, Blast_Score=119, Evalue=2e-27,
Organism=Drosophila melanogaster, GI24644337, Length=250, Percent_Identity=33.6, Blast_Score=112, Evalue=2e-25,
Organism=Drosophila melanogaster, GI24643142, Length=249, Percent_Identity=32.1285140562249, Blast_Score=98, Evalue=5e-21,
Organism=Drosophila melanogaster, GI18859837, Length=201, Percent_Identity=34.3283582089552, Blast_Score=88, Evalue=5e-18,
Organism=Drosophila melanogaster, GI21358495, Length=197, Percent_Identity=29.4416243654822, Blast_Score=85, Evalue=4e-17,
Organism=Drosophila melanogaster, GI24641232, Length=239, Percent_Identity=30.9623430962343, Blast_Score=84, Evalue=8e-17,
Organism=Drosophila melanogaster, GI281364494, Length=240, Percent_Identity=27.9166666666667, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24648693, Length=205, Percent_Identity=30.7317073170732, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI21355889, Length=205, Percent_Identity=30.7317073170732, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI17737361, Length=262, Percent_Identity=27.0992366412214, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24663911, Length=238, Percent_Identity=26.890756302521, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI21357673, Length=194, Percent_Identity=28.8659793814433, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24580925, Length=199, Percent_Identity=29.6482412060301, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI28571387, Length=238, Percent_Identity=29.4117647058824, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24641388, Length=206, Percent_Identity=29.6116504854369, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI116007234, Length=240, Percent_Identity=25.4166666666667, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI116007236, Length=205, Percent_Identity=30.7317073170732, Blast_Score=67, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: =1.1.1.47 [H]

Molecular weight: Translated: 25928; Mature: 25928

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRLINKVAIVTGASSGIGRVTAKLFAAEGAKVVVGARRERELDSLVAEIKAEGGDAIAV
CCHHHHEEEEEECCCCCHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCCEEEE
AGDVRSEDYHKALVAAAVTHYGKLDIAFNNAGIIGEAGPSTGVSEAGFSEALDVNLTASF
ECCCCCHHHHHHHHHHHHHHCCEEEEEECCCCEEECCCCCCCCCCCCCCHHEECCHHHHH
LAAKHQIGAMAENGGGSVIFTSTFVGYSFAFPGVAAYAASKSGLIGLTQALAAEFGPQGV
HHHHHHHCCEEECCCCEEEEEEECCCHHHCCCCHHHHHCCCCCCHHHHHHHHHHCCCCCE
RINAVLPGAVDTDMYRDMNDTAEKQAALSSMHALKRVATPDEIARSVLYLASDDASFVTG
EEEEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHEEEECCCCCEEEC
TASLVDGGISITRS
HHHHHCCCEEEECC
>Mature Secondary Structure
MNRLINKVAIVTGASSGIGRVTAKLFAAEGAKVVVGARRERELDSLVAEIKAEGGDAIAV
CCHHHHEEEEEECCCCCHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCCEEEE
AGDVRSEDYHKALVAAAVTHYGKLDIAFNNAGIIGEAGPSTGVSEAGFSEALDVNLTASF
ECCCCCHHHHHHHHHHHHHHCCEEEEEECCCCEEECCCCCCCCCCCCCCHHEECCHHHHH
LAAKHQIGAMAENGGGSVIFTSTFVGYSFAFPGVAAYAASKSGLIGLTQALAAEFGPQGV
HHHHHHHCCEEECCCCEEEEEEECCCHHHCCCCHHHHHCCCCCCHHHHHHHHHHCCCCCE
RINAVLPGAVDTDMYRDMNDTAEKQAALSSMHALKRVATPDEIARSVLYLASDDASFVTG
EEEEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHEEEECCCCCEEEC
TASLVDGGISITRS
HHHHHCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6420184; 3134196; 6413208; 6432532 [H]