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The map label for this gene is ybcM [H]

Identifier: 209551868

GI number: 209551868

Start: 4469179

End: 4470033

Strand: Direct

Name: ybcM [H]

Synonym: Rleg2_4301

Alternate gene names: 209551868

Gene position: 4469179-4470033 (Clockwise)

Preceding gene: 209551867

Following gene: 209551869

Centisome position: 98.48

GC content: 61.05

Gene sequence:

>855_bases
ATGCTGGACGACGTCTTTCCCGTTCCGACCAGGGCCTTGATCCGTCAGGGTGGGCGAGCCTGCTTTTATCGTCTCGTCAA
TACGAGCCCCATTTTGTTCCAGGTACAATCGGGAACGAAGATCATCATGGCGAATGACAGGCCTTTGCGCCTTGAGGCCG
GCGCATACGGCTTGCTGCCCGACTATCAGCCATTGACGATGGAGAACATTCCGAAGGCGCCGCGAAACTATCAGACCGTA
GCACTTCCTGTTCCGAGACAGCTGTTCGAGGATGCCTATGCGAGGATGGGATCGATCGCCGTTCCCTCGCGGCCGCTTCC
GGCAAGCGCCTCGAGCCTGCCGGAAGAAGCCGCCGTATTGTTTGACTATTGCTGTCAGCCCGGCAACCTGGCGAGGCTTC
CCGGCGCCATTGCCAAGGCCAGGCTGATGGAACTCGTCACCTGGTTTGCGCTCTGCGGCGCGGTGCTGGGTGAAGGCCAG
AGTCCTCGGCTTGAGGATCGGCTGAGGCAGATGATCGAAAGCGATCCGGCCTTTGATTGGACATTGGCGCACGCGGCGCG
TTCCTTCAACATGAGCGAGGCAACGCTGAGGCGCCGGCTGGCCGCGGAAAATACCGGCTTCAGCGAGATCCTGAGCGATA
CGAGAATGAACAGGGCGCTGGGGCTCATTCACACGACGACGCTGCCGATGGCGCAGGTCGCGCTGGAGGTCGGCTATGAT
TCACCGTCTCAATTTTCGGCGCGGTTCAAAGAGCGGTTCGGCGTCAGCCCGCGCCACGTGCGCAGTGGCTCCGAGCACTT
TGAACGGATCGGGGCAGAAGTTGAGCGTAGCGGGGCAGATGCACTGCCTCGCTGA

Upstream 100 bases:

>100_bases
CCCACCGGCGTCTCCCGGCTCAAGGTTGCCCCTGCCACGGGGTTTTGCTATTTCCCGCTCCAAGGGTCAGGGCGAGGAGC
GCCCTTTTGCCGGAGAAGCT

Downstream 100 bases:

>100_bases
CGGTAGTTTTCCGGCGTCATCAACTGCAGGAAAACAGCATGCGTCTCATAACAGCAGTCCTTCTCGCCGCGTCCGTCTTT
GGCGCCACATCTGCCCAGGC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 284; Mature: 284

Protein sequence:

>284_residues
MLDDVFPVPTRALIRQGGRACFYRLVNTSPILFQVQSGTKIIMANDRPLRLEAGAYGLLPDYQPLTMENIPKAPRNYQTV
ALPVPRQLFEDAYARMGSIAVPSRPLPASASSLPEEAAVLFDYCCQPGNLARLPGAIAKARLMELVTWFALCGAVLGEGQ
SPRLEDRLRQMIESDPAFDWTLAHAARSFNMSEATLRRRLAAENTGFSEILSDTRMNRALGLIHTTTLPMAQVALEVGYD
SPSQFSARFKERFGVSPRHVRSGSEHFERIGAEVERSGADALPR

Sequences:

>Translated_284_residues
MLDDVFPVPTRALIRQGGRACFYRLVNTSPILFQVQSGTKIIMANDRPLRLEAGAYGLLPDYQPLTMENIPKAPRNYQTV
ALPVPRQLFEDAYARMGSIAVPSRPLPASASSLPEEAAVLFDYCCQPGNLARLPGAIAKARLMELVTWFALCGAVLGEGQ
SPRLEDRLRQMIESDPAFDWTLAHAARSFNMSEATLRRRLAAENTGFSEILSDTRMNRALGLIHTTTLPMAQVALEVGYD
SPSQFSARFKERFGVSPRHVRSGSEHFERIGAEVERSGADALPR
>Mature_284_residues
MLDDVFPVPTRALIRQGGRACFYRLVNTSPILFQVQSGTKIIMANDRPLRLEAGAYGLLPDYQPLTMENIPKAPRNYQTV
ALPVPRQLFEDAYARMGSIAVPSRPLPASASSLPEEAAVLFDYCCQPGNLARLPGAIAKARLMELVTWFALCGAVLGEGQ
SPRLEDRLRQMIESDPAFDWTLAHAARSFNMSEATLRRRLAAENTGFSEILSDTRMNRALGLIHTTTLPMAQVALEVGYD
SPSQFSARFKERFGVSPRHVRSGSEHFERIGAEVERSGADALPR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786758, Length=262, Percent_Identity=27.8625954198473, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1790557, Length=109, Percent_Identity=34.8623853211009, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1789933, Length=96, Percent_Identity=35.4166666666667, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786776, Length=91, Percent_Identity=39.5604395604396, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31377; Mature: 31377

Theoretical pI: Translated: 8.32; Mature: 8.32

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDDVFPVPTRALIRQGGRACFYRLVNTSPILFQVQSGTKIIMANDRPLRLEAGAYGLLP
CCCCCCCCCHHHHHHCCCHHHHHHHHCCCCEEEEECCCCEEEEECCCCEEEECCCCCCCC
DYQPLTMENIPKAPRNYQTVALPVPRQLFEDAYARMGSIAVPSRPLPASASSLPEEAAVL
CCCCCCHHHCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH
FDYCCQPGNLARLPGAIAKARLMELVTWFALCGAVLGEGQSPRLEDRLRQMIESDPAFDW
HHHHCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHH
TLAHAARSFNMSEATLRRRLAAENTGFSEILSDTRMNRALGLIHTTTLPMAQVALEVGYD
HHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SPSQFSARFKERFGVSPRHVRSGSEHFERIGAEVERSGADALPR
CHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MLDDVFPVPTRALIRQGGRACFYRLVNTSPILFQVQSGTKIIMANDRPLRLEAGAYGLLP
CCCCCCCCCHHHHHHCCCHHHHHHHHCCCCEEEEECCCCEEEEECCCCEEEECCCCCCCC
DYQPLTMENIPKAPRNYQTVALPVPRQLFEDAYARMGSIAVPSRPLPASASSLPEEAAVL
CCCCCCHHHCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH
FDYCCQPGNLARLPGAIAKARLMELVTWFALCGAVLGEGQSPRLEDRLRQMIESDPAFDW
HHHHCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHH
TLAHAARSFNMSEATLRRRLAAENTGFSEILSDTRMNRALGLIHTTTLPMAQVALEVGYD
HHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SPSQFSARFKERFGVSPRHVRSGSEHFERIGAEVERSGADALPR
CHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]