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The map label for this gene is ybiO [H]

Identifier: 209551620

GI number: 209551620

Start: 4224385

End: 4226337

Strand: Reverse

Name: ybiO [H]

Synonym: Rleg2_4049

Alternate gene names: 209551620

Gene position: 4226337-4224385 (Counterclockwise)

Preceding gene: 209551621

Following gene: 209551619

Centisome position: 93.13

GC content: 64.0

Gene sequence:

>1953_bases
GTGAGGAGTTTCAGGTTGAAATGGCTTCTTTCCTTCACCGCCGCTTTTCTCTTCGCGTTGAGTGCTTTGGCGCAGACGCC
GCCGGTGGGCCAGCAGCAGAAGATCGACGACCTCGTGCGCCTTCTGCAGGATCCAGAGGTGAAAGCCTGGCTGGATAGCC
GCAAGGCGGAGAGTGCGCCTGTGACACCTGCTTCACCGGCCGGCAATTCGTCCTTGGCCCGGTGGGAGGCCGGCGCGCGG
GAACGTGTGAACGCTGTTCTGACGGCGATTCCGGCGATCCCGGCAGAGGTGACGGCCGCGGCAACACGAGCAAGGCGCGA
AGCTGCCGGCAGAGGCTATGCGCCGGTCTTCGTCATATTCGGCGGGCTGGTCGCTTTCGGTCTCGCCGCCGAGGCGGTGT
ATCGCAGATTTGCCGCGCGCCGCGAGGCACTGCTTGGCCGGCTTATCCCGGTCGGCATATTCGCGGGAGCGATGGGCATC
GTCTTTTTCGCAGTGGAATGGCCGCCGCTCGCGCGGGTGACGCTGCTTGCCTATCTCTCGGCCTTCATCCTGTTTCGATT
GGCGGCCGCGCTCCTGTCGGCGGCGGCGATGGGCTCGCCGCTGCGCAGGCGGCTCTTGATCCTGTTCGGGGTCATCAGTT
TTGCAATCGCGACAGCAGCCGTCGGCGAGCCGCTTGGCGTTTCCCCTGAGGTCAGCAGCGCGATCACCTACTGCTTCTCG
GTGATCGGGCTGTTGCTTGGGATCGAGGCCGTATGGTCGATCTCGGACGGAAGCCGCGCCTGGAAAGCCGCGAGAACAGC
CTTCCTCGTCGTCCTGTGGCTCATCTGGTGCGTCAATATGAAAGGCCTGTTCTGGATCGGCATCTATGCGCTGGTATTGC
CGGGGATCCTGAACGCCGTCGGCCGCGTGGCGCTCTCCTTCACCAGCGATCCAGGCAGCCTGCGCGGTATCCTGGTCGCC
CGAGGCGCGCGCGCCGCGGTTATCGCGGCCGCCGTGGGATGGCTGGCACTCGTCTGGCATCTCAATCCGGATACGCTCGG
TCAGCGCGACCCGATGATCGCCGCCTTGTTTTACGGCTGCCTGAAGAGCGTGCTGATCCTCGTGGTTGCCGACCTTCTTT
GGCAAATAGCGCGAGGCTGGATCGACCGGACGCTGCGTGTCTCCACAGGCACGACATCCCTCGCGCCGGCCGACGCCGCC
CGACGCGCCCGGTTTCGCACCCTTCTTCCGATCTTTCGCAACGCCCTGGCCGTCGCTGTCGCGGTCATGGCAGGGCTGAT
CGTGCTGGCGCAATTGGGTGTGCAGATCGGCCCGCTGATCGCCGGAGCGGGCATCTTCGGCGTCGCCATCGGTTTCGGCT
CGCAGACCCTGGTCAAGGACGTCATCAACGGTGTGTTCTACATGCTCGACGACGCCTTCCGGGTGGGCGAATACATTCAG
GCCAAGGACTACAAAGGGACGGTGGAGAGCTTCAGCCTGCGCTCGGTTCGTTTGCGCCATCATCGCGGCCCGGTGTTCAC
GGTGCCGTTCAGCGAGTTGGGTGCCGTCGAGAACATGAGCCGGGACTGGGTGATCGACAAGTTCAGGATCACCGTCGGTT
TCGACACCGACATAGACAAGGCGCGCAAGCTGACCAAGAAGGTCGGAGCCGAACTGATCGAAGATCCGGAACTCGGCCAG
CACTTCATCGAGCCGCTGAAAATGAAAGGCGTCGAGCAGTTCGGTGATTATGGCATCGTGCTGAGCTTCGCCATGACCAC
TGTGCCGGGCATGCAGACCTATATCCGCCGCAAGGCCTATGCCAAGATTCGCGAGGTGTTCCTCGCCAACGGCATCGCAT
TTGCGCAGCCAACGGTGCAAGTCGGAGGCGACGACAAGGGCGGCGGCGCGGCGGCAGCCGCGCAAGCGATCCGCGCGCAA
CAGGCGGCAAACACGGCGGCACCGGCAAAGTGA

Upstream 100 bases:

>100_bases
CGCCGGTTGCGATCATCGAACAGCCCGTCACGCGGAAGAAGCCGCCGCGAGCTGCCAACGAGACGCTCGACGGCGACCTG
AAGCAACAGACGCTGACACA

Downstream 100 bases:

>100_bases
CCTCGCCGGCGACTGTGACAGGCGACCGCCGACAGGTGGATAAAACGATCAGCCTTGAAGTGATATCACCGCATCGCGGG
AGGTCCAAATGGCACCGGAA

Product: MscS Mechanosensitive ion channel

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 650; Mature: 650

Protein sequence:

>650_residues
MRSFRLKWLLSFTAAFLFALSALAQTPPVGQQQKIDDLVRLLQDPEVKAWLDSRKAESAPVTPASPAGNSSLARWEAGAR
ERVNAVLTAIPAIPAEVTAAATRARREAAGRGYAPVFVIFGGLVAFGLAAEAVYRRFAARREALLGRLIPVGIFAGAMGI
VFFAVEWPPLARVTLLAYLSAFILFRLAAALLSAAAMGSPLRRRLLILFGVISFAIATAAVGEPLGVSPEVSSAITYCFS
VIGLLLGIEAVWSISDGSRAWKAARTAFLVVLWLIWCVNMKGLFWIGIYALVLPGILNAVGRVALSFTSDPGSLRGILVA
RGARAAVIAAAVGWLALVWHLNPDTLGQRDPMIAALFYGCLKSVLILVVADLLWQIARGWIDRTLRVSTGTTSLAPADAA
RRARFRTLLPIFRNALAVAVAVMAGLIVLAQLGVQIGPLIAGAGIFGVAIGFGSQTLVKDVINGVFYMLDDAFRVGEYIQ
AKDYKGTVESFSLRSVRLRHHRGPVFTVPFSELGAVENMSRDWVIDKFRITVGFDTDIDKARKLTKKVGAELIEDPELGQ
HFIEPLKMKGVEQFGDYGIVLSFAMTTVPGMQTYIRRKAYAKIREVFLANGIAFAQPTVQVGGDDKGGGAAAAAQAIRAQ
QAANTAAPAK

Sequences:

>Translated_650_residues
MRSFRLKWLLSFTAAFLFALSALAQTPPVGQQQKIDDLVRLLQDPEVKAWLDSRKAESAPVTPASPAGNSSLARWEAGAR
ERVNAVLTAIPAIPAEVTAAATRARREAAGRGYAPVFVIFGGLVAFGLAAEAVYRRFAARREALLGRLIPVGIFAGAMGI
VFFAVEWPPLARVTLLAYLSAFILFRLAAALLSAAAMGSPLRRRLLILFGVISFAIATAAVGEPLGVSPEVSSAITYCFS
VIGLLLGIEAVWSISDGSRAWKAARTAFLVVLWLIWCVNMKGLFWIGIYALVLPGILNAVGRVALSFTSDPGSLRGILVA
RGARAAVIAAAVGWLALVWHLNPDTLGQRDPMIAALFYGCLKSVLILVVADLLWQIARGWIDRTLRVSTGTTSLAPADAA
RRARFRTLLPIFRNALAVAVAVMAGLIVLAQLGVQIGPLIAGAGIFGVAIGFGSQTLVKDVINGVFYMLDDAFRVGEYIQ
AKDYKGTVESFSLRSVRLRHHRGPVFTVPFSELGAVENMSRDWVIDKFRITVGFDTDIDKARKLTKKVGAELIEDPELGQ
HFIEPLKMKGVEQFGDYGIVLSFAMTTVPGMQTYIRRKAYAKIREVFLANGIAFAQPTVQVGGDDKGGGAAAAAQAIRAQ
QAANTAAPAK
>Mature_650_residues
MRSFRLKWLLSFTAAFLFALSALAQTPPVGQQQKIDDLVRLLQDPEVKAWLDSRKAESAPVTPASPAGNSSLARWEAGAR
ERVNAVLTAIPAIPAEVTAAATRARREAAGRGYAPVFVIFGGLVAFGLAAEAVYRRFAARREALLGRLIPVGIFAGAMGI
VFFAVEWPPLARVTLLAYLSAFILFRLAAALLSAAAMGSPLRRRLLILFGVISFAIATAAVGEPLGVSPEVSSAITYCFS
VIGLLLGIEAVWSISDGSRAWKAARTAFLVVLWLIWCVNMKGLFWIGIYALVLPGILNAVGRVALSFTSDPGSLRGILVA
RGARAAVIAAAVGWLALVWHLNPDTLGQRDPMIAALFYGCLKSVLILVVADLLWQIARGWIDRTLRVSTGTTSLAPADAA
RRARFRTLLPIFRNALAVAVAVMAGLIVLAQLGVQIGPLIAGAGIFGVAIGFGSQTLVKDVINGVFYMLDDAFRVGEYIQ
AKDYKGTVESFSLRSVRLRHHRGPVFTVPFSELGAVENMSRDWVIDKFRITVGFDTDIDKARKLTKKVGAELIEDPELGQ
HFIEPLKMKGVEQFGDYGIVLSFAMTTVPGMQTYIRRKAYAKIREVFLANGIAFAQPTVQVGGDDKGGGAAAAAQAIRAQ
QAANTAAPAK

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI87081787, Length=271, Percent_Identity=34.6863468634686, Blast_Score=116, Evalue=5e-27,
Organism=Escherichia coli, GI1789291, Length=200, Percent_Identity=27, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 69675; Mature: 69675

Theoretical pI: Translated: 10.67; Mature: 10.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSFRLKWLLSFTAAFLFALSALAQTPPVGQQQKIDDLVRLLQDPEVKAWLDSRKAESAP
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCC
VTPASPAGNSSLARWEAGARERVNAVLTAIPAIPAEVTAAATRARREAAGRGYAPVFVIF
CCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHH
GGLVAFGLAAEAVYRRFAARREALLGRLIPVGIFAGAMGIVFFAVEWPPLARVTLLAYLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHH
AFILFRLAAALLSAAAMGSPLRRRLLILFGVISFAIATAAVGEPLGVSPEVSSAITYCFS
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
VIGLLLGIEAVWSISDGSRAWKAARTAFLVVLWLIWCVNMKGLFWIGIYALVLPGILNAV
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
GRVALSFTSDPGSLRGILVARGARAAVIAAAVGWLALVWHLNPDTLGQRDPMIAALFYGC
HHHEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCHHCCCCCCHHHHHHHHHH
LKSVLILVVADLLWQIARGWIDRTLRVSTGTTSLAPADAARRARFRTLLPIFRNALAVAV
HHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
AVMAGLIVLAQLGVQIGPLIAGAGIFGVAIGFGSQTLVKDVINGVFYMLDDAFRVGEYIQ
HHHHHHHHHHHHCHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AKDYKGTVESFSLRSVRLRHHRGPVFTVPFSELGAVENMSRDWVIDKFRITVGFDTDIDK
CCCCCCCHHHHHHHHHHHHHCCCCEEEECHHHHCHHHCCCCCCEEEEEEEEEECCCCHHH
ARKLTKKVGAELIEDPELGQHFIEPLKMKGVEQFGDYGIVLSFAMTTVPGMQTYIRRKAY
HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHCCHHHHHHHHHHH
AKIREVFLANGIAFAQPTVQVGGDDKGGGAAAAAQAIRAQQAANTAAPAK
HHHHHHHHHCCCEECCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MRSFRLKWLLSFTAAFLFALSALAQTPPVGQQQKIDDLVRLLQDPEVKAWLDSRKAESAP
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCC
VTPASPAGNSSLARWEAGARERVNAVLTAIPAIPAEVTAAATRARREAAGRGYAPVFVIF
CCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHH
GGLVAFGLAAEAVYRRFAARREALLGRLIPVGIFAGAMGIVFFAVEWPPLARVTLLAYLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHH
AFILFRLAAALLSAAAMGSPLRRRLLILFGVISFAIATAAVGEPLGVSPEVSSAITYCFS
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
VIGLLLGIEAVWSISDGSRAWKAARTAFLVVLWLIWCVNMKGLFWIGIYALVLPGILNAV
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
GRVALSFTSDPGSLRGILVARGARAAVIAAAVGWLALVWHLNPDTLGQRDPMIAALFYGC
HHHEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCHHCCCCCCHHHHHHHHHH
LKSVLILVVADLLWQIARGWIDRTLRVSTGTTSLAPADAARRARFRTLLPIFRNALAVAV
HHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
AVMAGLIVLAQLGVQIGPLIAGAGIFGVAIGFGSQTLVKDVINGVFYMLDDAFRVGEYIQ
HHHHHHHHHHHHCHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AKDYKGTVESFSLRSVRLRHHRGPVFTVPFSELGAVENMSRDWVIDKFRITVGFDTDIDK
CCCCCCCHHHHHHHHHHHHHCCCCEEEECHHHHCHHHCCCCCCEEEEEEEEEECCCCHHH
ARKLTKKVGAELIEDPELGQHFIEPLKMKGVEQFGDYGIVLSFAMTTVPGMQTYIRRKAY
HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHCCHHHHHHHHHHH
AKIREVFLANGIAFAQPTVQVGGDDKGGGAAAAAQAIRAQQAANTAAPAK
HHHHHHHHHCCCEECCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]