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The map label for this gene is xylR [H]

Identifier: 209550696

GI number: 209550696

Start: 3189385

End: 3190590

Strand: Reverse

Name: xylR [H]

Synonym: Rleg2_3120

Alternate gene names: 209550696

Gene position: 3190590-3189385 (Counterclockwise)

Preceding gene: 209550703

Following gene: 209550695

Centisome position: 70.31

GC content: 65.59

Gene sequence:

>1206_bases
ATGAATGACGTCAGGCCGATCCGGGCAAAGAGCGGCACCAACCATGAAGGCACCAGCGCGCATAACCGGCGCGTGATGAT
CGACGCCTTGAGGATCAATGGTGAGCTTTCACGCGCCGATCTGGCGCGGGCGACATGGCTGACCAAGCAGACGGTGTCGA
ATATCATCGAGGAGCTCGAGCGCGATGGTCTCGTGCGTTCGCAGGAGCCGGTGCGCAAGGGCAGGGGGCAGCCCTCGACG
CCCTACGGGCTCGTGCCCGAAGGCGCCTTCGCGATCGGCCTGCAGATCGATCGGCATGTGACGCGGGCGGTCGCCGTCGA
TCTCATCGGCAGTGTTCTGGTGCGCGCAGAAGCCGGCCTCCCGCCCGGAGGTCCCTCGACGGGTGCAAAGGTCATCCTCG
ATCTCGTCGCCGATGTGCGTTCCAAGCTTGCCGGCATCGTCCAGCAGTCGGAAAAGCGAATGGTCGGCCTCGGTGTCGCC
ATGCCCGGGCCCTTCGGGGTCGCCGGCAGCGGCGACGATCCGTGGATGATGGAGGCCTGGCAAAAGTTTCCGCTGCTGGA
AAGGCTGGCCGCCGGCACCGGGCTCGACGTCGGCCTGCAGAACGATGCGGCGGCAGCCGCGACCGCCGAGCGCATGGTGG
GAGCCGCCCATGGTGTCGACCATGCTGTCTGCCTCTTCGTCGGCTACGGCATCGGCGCCGGCCTCATTCTGAACGGCGAG
CTCTACCGTGGCGCCAACGGCAATGCCGGCGAGATCGGCATGGCGCTGCTGTTTGCCGACGGCAAATCGACGCCGCTCGA
ACATCGCGCTTCGCTCGCCTCGCTCTATCAGCATCTCTCGGCCGATCCTGCCGATCCCGACCTGCATGCACGCATCAACG
ATCTTGCCTCAAGGGGCGATCCAAACATTCAGACCTGGATCGAAGCGGCGGCAGTGGACCTGCGCTGGAGCATCCATCTC
ATCGAAACGGTCTTCGATCCGCAGACCGTGATCCTGTGCGGCAGTGCCCCGGAAGCGCTGGTGAAAAGGTTGATTGCCGC
GATCGGCCCGCTGCTGCCCTCGATCGCCGACCGACCGGGCCGCATGCTGCCGCGCCTGCAGCCTGGCATGGCCGATCCCT
GGTCGGTGGCGATCGGTGCCGCCGCCGGACCGATCGGCCGTGCATTCGATCCCCGGTTCGCTGCAATTTTGAAGGATTTC
CTTTAA

Upstream 100 bases:

>100_bases
GGCGTCCTGCGTTCCCTGGAACTCTCCGGTCCCTTATTAAGTCAATTGTCTTGACTTATTACTTCGTCAACATTCTACTG
GAGTCAAGAGGCAATTGCAC

Downstream 100 bases:

>100_bases
ATCTGGGGCTAAAACCAGGCGTTGCACAGCAGTGCAACGGCGGGGAGATAGGCGGTTTTGCAAGTTTTCATGCGGCGGCA
TCTTCGAATAAGGATGCTGC

Product: ROK family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 401

Protein sequence:

>401_residues
MNDVRPIRAKSGTNHEGTSAHNRRVMIDALRINGELSRADLARATWLTKQTVSNIIEELERDGLVRSQEPVRKGRGQPST
PYGLVPEGAFAIGLQIDRHVTRAVAVDLIGSVLVRAEAGLPPGGPSTGAKVILDLVADVRSKLAGIVQQSEKRMVGLGVA
MPGPFGVAGSGDDPWMMEAWQKFPLLERLAAGTGLDVGLQNDAAAAATAERMVGAAHGVDHAVCLFVGYGIGAGLILNGE
LYRGANGNAGEIGMALLFADGKSTPLEHRASLASLYQHLSADPADPDLHARINDLASRGDPNIQTWIEAAAVDLRWSIHL
IETVFDPQTVILCGSAPEALVKRLIAAIGPLLPSIADRPGRMLPRLQPGMADPWSVAIGAAAGPIGRAFDPRFAAILKDF
L

Sequences:

>Translated_401_residues
MNDVRPIRAKSGTNHEGTSAHNRRVMIDALRINGELSRADLARATWLTKQTVSNIIEELERDGLVRSQEPVRKGRGQPST
PYGLVPEGAFAIGLQIDRHVTRAVAVDLIGSVLVRAEAGLPPGGPSTGAKVILDLVADVRSKLAGIVQQSEKRMVGLGVA
MPGPFGVAGSGDDPWMMEAWQKFPLLERLAAGTGLDVGLQNDAAAAATAERMVGAAHGVDHAVCLFVGYGIGAGLILNGE
LYRGANGNAGEIGMALLFADGKSTPLEHRASLASLYQHLSADPADPDLHARINDLASRGDPNIQTWIEAAAVDLRWSIHL
IETVFDPQTVILCGSAPEALVKRLIAAIGPLLPSIADRPGRMLPRLQPGMADPWSVAIGAAAGPIGRAFDPRFAAILKDF
L
>Mature_401_residues
MNDVRPIRAKSGTNHEGTSAHNRRVMIDALRINGELSRADLARATWLTKQTVSNIIEELERDGLVRSQEPVRKGRGQPST
PYGLVPEGAFAIGLQIDRHVTRAVAVDLIGSVLVRAEAGLPPGGPSTGAKVILDLVADVRSKLAGIVQQSEKRMVGLGVA
MPGPFGVAGSGDDPWMMEAWQKFPLLERLAAGTGLDVGLQNDAAAAATAERMVGAAHGVDHAVCLFVGYGIGAGLILNGE
LYRGANGNAGEIGMALLFADGKSTPLEHRASLASLYQHLSADPADPDLHARINDLASRGDPNIQTWIEAAAVDLRWSIHL
IETVFDPQTVILCGSAPEALVKRLIAAIGPLLPSIADRPGRMLPRLQPGMADPWSVAIGAAAGPIGRAFDPRFAAILKDF
L

Specific function: Transcriptional repressor of xylose-utilizing enzymes [H]

COG id: COG1940

COG function: function code KG; Transcriptional regulator/sugar kinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ROK (nagC/xylR) family [H]

Homologues:

Organism=Escherichia coli, GI1786891, Length=369, Percent_Identity=26.2872628726287, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787878, Length=232, Percent_Identity=26.2931034482759, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000600
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00480 ROK [H]

EC number: NA

Molecular weight: Translated: 42314; Mature: 42314

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDVRPIRAKSGTNHEGTSAHNRRVMIDALRINGELSRADLARATWLTKQTVSNIIEELE
CCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
RDGLVRSQEPVRKGRGQPSTPYGLVPEGAFAIGLQIDRHVTRAVAVDLIGSVLVRAEAGL
HCCCCCCCCHHHHCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCC
PPGGPSTGAKVILDLVADVRSKLAGIVQQSEKRMVGLGVAMPGPFGVAGSGDDPWMMEAW
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHH
QKFPLLERLAAGTGLDVGLQNDAAAAATAERMVGAAHGVDHAVCLFVGYGIGAGLILNGE
HHCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEECCE
LYRGANGNAGEIGMALLFADGKSTPLEHRASLASLYQHLSADPADPDLHARINDLASRGD
EEECCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCC
PNIQTWIEAAAVDLRWSIHLIETVFDPQTVILCGSAPEALVKRLIAAIGPLLPSIADRPG
CCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCC
RMLPRLQPGMADPWSVAIGAAAGPIGRAFDPRFAAILKDFL
CCCCCCCCCCCCCHHHEECCCCCCCCCCCCHHHHHHHHHHC
>Mature Secondary Structure
MNDVRPIRAKSGTNHEGTSAHNRRVMIDALRINGELSRADLARATWLTKQTVSNIIEELE
CCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
RDGLVRSQEPVRKGRGQPSTPYGLVPEGAFAIGLQIDRHVTRAVAVDLIGSVLVRAEAGL
HCCCCCCCCHHHHCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCC
PPGGPSTGAKVILDLVADVRSKLAGIVQQSEKRMVGLGVAMPGPFGVAGSGDDPWMMEAW
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHH
QKFPLLERLAAGTGLDVGLQNDAAAAATAERMVGAAHGVDHAVCLFVGYGIGAGLILNGE
HHCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEECCE
LYRGANGNAGEIGMALLFADGKSTPLEHRASLASLYQHLSADPADPDLHARINDLASRGD
EEECCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCC
PNIQTWIEAAAVDLRWSIHLIETVFDPQTVILCGSAPEALVKRLIAAIGPLLPSIADRPG
CCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCC
RMLPRLQPGMADPWSVAIGAAAGPIGRAFDPRFAAILKDFL
CCCCCCCCCCCCCHHHEECCCCCCCCCCCCHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2544559 [H]