Click here to switch to the map view.

The map label for this gene is ugpB [H]

Identifier: 209550695

GI number: 209550695

Start: 3187665

End: 3189020

Strand: Reverse

Name: ugpB [H]

Synonym: Rleg2_3119

Alternate gene names: 209550695

Gene position: 3189020-3187665 (Counterclockwise)

Preceding gene: 209550696

Following gene: 209550694

Centisome position: 70.27

GC content: 60.03

Gene sequence:

>1356_bases
ATGCAAGCCAAGCTTCTCGGCGCCGTTGGCGCCCTTCTCGCTACAGCGTTTCTTGCCGGTCCCGCTGCCGCCGCCGATAA
GACCAAGATTGACTTCTGGTTCGGCAATTCCGGTGACATCGCAAAGCGTGTCCAGGAACAGTGCGATCGCTTCAACCAGT
CGCAGGCCGATTACGAAGTCGTCTGCACCAGCCAGGGCAGCTACGACGCGTCCTTGCAGAACACCATTGCCGCCTTCCGC
GCCGGCAAGCAGCCGACCATCGCTCAGGTTTCCGACGCCGGCACGCTCGACATCATGCTTTCCGGCGCCTACTACCCGGC
CAATCAGCTGATGACCGACATGGGCTACACGGTCGACTGGAAAGATTACTTCTCCGGCATCGCCAACTATTATGCGACGT
CCAAGGGCGAGATGTATTCCTTCCCCTTCAACTCCTCGACCGCATTGCTCTACTGGAACAAGGATGCCTTCGCCAAGATC
GGCAAGGACCATGCTCCGGCCACCTGGCAGGAAGCCGGCGAAGATTTCAAGGCTCTGAAGGATGCAGGTTATGCTTGCCC
GCTCGCCTTCGACATCTCCAACAACGAAGTCTGGCAATATGTCGAGCAGTTCGAAGCCGTTAACGGCGAAGCGATCGCGA
CGAAGAAGAACGGCTTTGAAGGCCTCGACGCCGAGCTGACCTACAACAAGAACCCGCTGCTCGTCAGCTACATCAAGGAC
CTCAAGTCCTGGTACGACAACAAGCTGGCTTTCATCAAGAACAAGGCCGTCGGCCAGACCTTCGTCGAAGCCTTCGCCGC
CGGCGATTGCCAGGTTATCCTCACCTCGGTCGGCGACCACGGCAATATCGGCCGCACCGCCAAGCAGGGCATGAACTGGG
GCGTTGCCATGCTCCCGACCTACGGCACTGCAACCCGCCACAGCTCCTATGTCGGCGGCGCTTCGCTCTGGGTTCTGAAG
GGTCACACCGACGCCGAATACAAGGCTGCCGCTGCCTTTTTCAACTTCATCGCAAAGCCGGAAGAAGCCCTGACCTGGTC
GACGGTCACCGGCTACATCCCGGTTCGTAACTCCGGCTTCGAATATCTCAAGAAGCAGGGCTTCTACGACAAGGCTCCTT
ATGCCGGCCGTGAACTCGCCATTCAGAGCCTGACGGCATCGCCTGCCGACGACACGGCGCCGCACGGCATCCGTCTCGGC
GGCCTGCTTCAGGTCCGCACCGAAATCGCCAACGGCCTGCAGGCGATCTTCGTCAACAATGCCGACGTCCAGGCTTCGCT
CGACGGCGCTGCCGAACGCGGCAACCAGCTGCTGCGCCGCTTCCAGCAGACCTACAAGAACGTTCAGCTTCCTTGA

Upstream 100 bases:

>100_bases
ATCGTTTCATGTCATGTAATATTCATTGGCCGCGGCAATTTGAACCAGCTAATAGGGCGTGCGCCGAAAGTGCGCGTCCC
TTTTTACGTTCGAGGTTCTC

Downstream 100 bases:

>100_bases
TCGGCTGATATCAGCCGCACCCGGCGCGCGCTGCGCGCGCCGGGTGCGTCTTTGTAAGCTCTCTTAATCGGTCGCGGATG
CGAAGTGTCGCCCGCGCCTA

Product: family 1 extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 451; Mature: 451

Protein sequence:

>451_residues
MQAKLLGAVGALLATAFLAGPAAAADKTKIDFWFGNSGDIAKRVQEQCDRFNQSQADYEVVCTSQGSYDASLQNTIAAFR
AGKQPTIAQVSDAGTLDIMLSGAYYPANQLMTDMGYTVDWKDYFSGIANYYATSKGEMYSFPFNSSTALLYWNKDAFAKI
GKDHAPATWQEAGEDFKALKDAGYACPLAFDISNNEVWQYVEQFEAVNGEAIATKKNGFEGLDAELTYNKNPLLVSYIKD
LKSWYDNKLAFIKNKAVGQTFVEAFAAGDCQVILTSVGDHGNIGRTAKQGMNWGVAMLPTYGTATRHSSYVGGASLWVLK
GHTDAEYKAAAAFFNFIAKPEEALTWSTVTGYIPVRNSGFEYLKKQGFYDKAPYAGRELAIQSLTASPADDTAPHGIRLG
GLLQVRTEIANGLQAIFVNNADVQASLDGAAERGNQLLRRFQQTYKNVQLP

Sequences:

>Translated_451_residues
MQAKLLGAVGALLATAFLAGPAAAADKTKIDFWFGNSGDIAKRVQEQCDRFNQSQADYEVVCTSQGSYDASLQNTIAAFR
AGKQPTIAQVSDAGTLDIMLSGAYYPANQLMTDMGYTVDWKDYFSGIANYYATSKGEMYSFPFNSSTALLYWNKDAFAKI
GKDHAPATWQEAGEDFKALKDAGYACPLAFDISNNEVWQYVEQFEAVNGEAIATKKNGFEGLDAELTYNKNPLLVSYIKD
LKSWYDNKLAFIKNKAVGQTFVEAFAAGDCQVILTSVGDHGNIGRTAKQGMNWGVAMLPTYGTATRHSSYVGGASLWVLK
GHTDAEYKAAAAFFNFIAKPEEALTWSTVTGYIPVRNSGFEYLKKQGFYDKAPYAGRELAIQSLTASPADDTAPHGIRLG
GLLQVRTEIANGLQAIFVNNADVQASLDGAAERGNQLLRRFQQTYKNVQLP
>Mature_451_residues
MQAKLLGAVGALLATAFLAGPAAAADKTKIDFWFGNSGDIAKRVQEQCDRFNQSQADYEVVCTSQGSYDASLQNTIAAFR
AGKQPTIAQVSDAGTLDIMLSGAYYPANQLMTDMGYTVDWKDYFSGIANYYATSKGEMYSFPFNSSTALLYWNKDAFAKI
GKDHAPATWQEAGEDFKALKDAGYACPLAFDISNNEVWQYVEQFEAVNGEAIATKKNGFEGLDAELTYNKNPLLVSYIKD
LKSWYDNKLAFIKNKAVGQTFVEAFAAGDCQVILTSVGDHGNIGRTAKQGMNWGVAMLPTYGTATRHSSYVGGASLWVLK
GHTDAEYKAAAAFFNFIAKPEEALTWSTVTGYIPVRNSGFEYLKKQGFYDKAPYAGRELAIQSLTASPADDTAPHGIRLG
GLLQVRTEIANGLQAIFVNNADVQASLDGAAERGNQLLRRFQQTYKNVQLP

Specific function: sn-glycerol-3-phosphate and glycerophosphoryl diester- binding protein interacts with the binding protein-dependent transport system ugpACE [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

Organism=Escherichia coli, GI1789862, Length=425, Percent_Identity=37.6470588235294, Blast_Score=263, Evalue=1e-71,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 49158; Mature: 49158

Theoretical pI: Translated: 5.49; Mature: 5.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQAKLLGAVGALLATAFLAGPAAAADKTKIDFWFGNSGDIAKRVQEQCDRFNQSQADYEV
CCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCEEE
VCTSQGSYDASLQNTIAAFRAGKQPTIAQVSDAGTLDIMLSGAYYPANQLMTDMGYTVDW
EEECCCCCCHHHHHHHHHHHCCCCCCEEEECCCCEEEEEEECCCCCHHHHHHHCCCEEEH
KDYFSGIANYYATSKGEMYSFPFNSSTALLYWNKDAFAKIGKDHAPATWQEAGEDFKALK
HHHHHHHHHHHCCCCCCEEECCCCCCEEEEEECCHHHHHCCCCCCCCCHHHHHHHHHHHH
DAGYACPLAFDISNNEVWQYVEQFEAVNGEAIATKKNGFEGLDAELTYNKNPLLVSYIKD
HCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEECCCCCHHHHHHH
LKSWYDNKLAFIKNKAVGQTFVEAFAAGDCQVILTSVGDHGNIGRTAKQGMNWGVAMLPT
HHHHHCCCEEEEECCHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHCCCCCEEEECC
YGTATRHSSYVGGASLWVLKGHTDAEYKAAAAFFNFIAKPEEALTWSTVTGYIPVRNSGF
CCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCHHEEEEEEEEEEEECCCCH
EYLKKQGFYDKAPYAGRELAIQSLTASPADDTAPHGIRLGGLLQVRTEIANGLQAIFVNN
HHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEECHHHHHHHHHHCCEEEEEEEC
ADVQASLDGAAERGNQLLRRFQQTYKNVQLP
CCCEECCCHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MQAKLLGAVGALLATAFLAGPAAAADKTKIDFWFGNSGDIAKRVQEQCDRFNQSQADYEV
CCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCEEE
VCTSQGSYDASLQNTIAAFRAGKQPTIAQVSDAGTLDIMLSGAYYPANQLMTDMGYTVDW
EEECCCCCCHHHHHHHHHHHCCCCCCEEEECCCCEEEEEEECCCCCHHHHHHHCCCEEEH
KDYFSGIANYYATSKGEMYSFPFNSSTALLYWNKDAFAKIGKDHAPATWQEAGEDFKALK
HHHHHHHHHHHCCCCCCEEECCCCCCEEEEEECCHHHHHCCCCCCCCCHHHHHHHHHHHH
DAGYACPLAFDISNNEVWQYVEQFEAVNGEAIATKKNGFEGLDAELTYNKNPLLVSYIKD
HCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEECCCCCHHHHHHH
LKSWYDNKLAFIKNKAVGQTFVEAFAAGDCQVILTSVGDHGNIGRTAKQGMNWGVAMLPT
HHHHHCCCEEEEECCHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHCCCCCEEEECC
YGTATRHSSYVGGASLWVLKGHTDAEYKAAAAFFNFIAKPEEALTWSTVTGYIPVRNSGF
CCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCHHEEEEEEEEEEEECCCCH
EYLKKQGFYDKAPYAGRELAIQSLTASPADDTAPHGIRLGGLLQVRTEIANGLQAIFVNN
HHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEECHHHHHHHHHHCCEEEEEEEC
ADVQASLDGAAERGNQLLRRFQQTYKNVQLP
CCCEECCCHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA