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The map label for this gene is glcD [C]

Identifier: 209549585

GI number: 209549585

Start: 2047292

End: 2048731

Strand: Reverse

Name: glcD [C]

Synonym: Rleg2_1992

Alternate gene names: 209549585

Gene position: 2048731-2047292 (Counterclockwise)

Preceding gene: 209549587

Following gene: 209549583

Centisome position: 45.15

GC content: 62.85

Gene sequence:

>1440_bases
ATGGACAATTTGAACCTGACGACCCTGCAAAAGGGGCAGACGATGGTCAATGATGTGGCCATCGATGCGTTTGCCGCCGG
TTTTCGCGGCAAGCTCCTGACAAGCAAGGATATGGATTACAACGAGGCCCGGGCGATCTGGAATGCGATGATCGACCGGC
GGCCCGGGCTTATCGGGCGTTGCGCCGGTGCTGCCGATGTCGTGCGCGCGGTAAAGTTTGCTCGCGACAACGATCTGCTC
GTTTCGGTGCGCGGCGGTGGGCACGGCATTGCCGGCAACGCCGTCTGCGAGGGCGGCGTCGTCATCGACCTGTCGGCGAT
GAAATCGGTGCGGGTCGACCCTGAGACGCGCCGCGCCCGGATCGAGCCCGGTGCAACGCTTGCCGATGTCGACCAGGAAA
CGCTGACCTTCGGGCTGGTGCTGCCGACCGGGATCAATTCCACCACCGGCATCGCCGGCCTGACGCTTGGCGGCGGCTTT
GGCTGGCTGACCCGCAAATTCGGGCTGACGATCGACAATCTGGTCTCGGTCGATGTAGTGACGGCCGATGGCGAGCTGGT
CAAGGCGAGCGAGACGGAAAGGCCGGACCTCTTCTGGGCCTTGCGCGGCGGCGGCGGCAATTTCGGCGTCGTCACCTCCT
TTGAGTTCCAGCTCAACCCGCTGCATTCCGATGTTCTTGCCGGACTGGTCGTACATCCCTTCGCTGACGCGGAGAGAGTG
CTGAGGGAATATCGGCAGGCGCTGGAAGCCGCACCCGATGAACTGACCTGCTGGGTTGTGATGCGCCAGGCGCCGCCGCT
GCCGTTCCTTCCGGCCGAATGGCACGGCAAGGAGGTCGTGGTGCTCGCCATGTGCTATTGTGGAGATATCGCGGCGGGAG
AAAAAGCGACGGAAAGATTGCGAGCGATCGGAAAACCGATTGCCGATGTCGTTGGTCCGGTGCCGTTCACCGGCTGGCAG
CAGGCATTTGATCCGTTGCTAACGCCAGGTGCGCGCAATTACTGGAAGAGCCAGGATTTTGCCTCGCTTTCGGATGCGAC
GATCGAGGTGCTGCTCAACGCCGTGCGCAAGCTGCCGGGACCGGAATGCGAGGTATTCGTCGGCCATGTCGGCGGTGCGG
CCGGCCGTATTGCCACCGAAGCCACCGCATTTCCGCAGCGCAGTTCGCACTTCGTCATGAATGTGCATGCGCGCTGGCGG
GAGGCCGGGATGGATGCAAGCTGCACCGGCTGGGCGCGCGAACTCTTCGAGGCAACCAAGCCGCATGCTGTGGGTACCGC
CTATATCAACTTCATGCCCGAGGACGAGGCCGATAGGGTGGAAATGGCCTACGGCGCCAACTACGCCCGGCTTGCCGAAA
TCAAGCGGCGTTACGATCCGAATAACCTGTTCCGCATGAACCAGAATGTGAAGCCGCTGGCGGCTGTGCGGGCTGCCTGA

Upstream 100 bases:

>100_bases
GCGGCAATTAGCTAATCCTTTTGGAAAACTTGTTTGGTGATCACCGCAGGCGCAATATGCCGCCGCGACGGTGCGGGGCG
CCGGTCGCATGGAGGAAATC

Downstream 100 bases:

>100_bases
GGGGCAGCGCCACCGACAGATCGAAATCTCCGCCGCACGTTGGCCTTAAACGCGCGGCGCCATCATTATCCGCCGATGTC
TCCAGCCGGTGATAAGTCGG

Product: FAD linked oxidase

Products: NA

Alternate protein names: 6-HDNO [H]

Number of amino acids: Translated: 479; Mature: 479

Protein sequence:

>479_residues
MDNLNLTTLQKGQTMVNDVAIDAFAAGFRGKLLTSKDMDYNEARAIWNAMIDRRPGLIGRCAGAADVVRAVKFARDNDLL
VSVRGGGHGIAGNAVCEGGVVIDLSAMKSVRVDPETRRARIEPGATLADVDQETLTFGLVLPTGINSTTGIAGLTLGGGF
GWLTRKFGLTIDNLVSVDVVTADGELVKASETERPDLFWALRGGGGNFGVVTSFEFQLNPLHSDVLAGLVVHPFADAERV
LREYRQALEAAPDELTCWVVMRQAPPLPFLPAEWHGKEVVVLAMCYCGDIAAGEKATERLRAIGKPIADVVGPVPFTGWQ
QAFDPLLTPGARNYWKSQDFASLSDATIEVLLNAVRKLPGPECEVFVGHVGGAAGRIATEATAFPQRSSHFVMNVHARWR
EAGMDASCTGWARELFEATKPHAVGTAYINFMPEDEADRVEMAYGANYARLAEIKRRYDPNNLFRMNQNVKPLAAVRAA

Sequences:

>Translated_479_residues
MDNLNLTTLQKGQTMVNDVAIDAFAAGFRGKLLTSKDMDYNEARAIWNAMIDRRPGLIGRCAGAADVVRAVKFARDNDLL
VSVRGGGHGIAGNAVCEGGVVIDLSAMKSVRVDPETRRARIEPGATLADVDQETLTFGLVLPTGINSTTGIAGLTLGGGF
GWLTRKFGLTIDNLVSVDVVTADGELVKASETERPDLFWALRGGGGNFGVVTSFEFQLNPLHSDVLAGLVVHPFADAERV
LREYRQALEAAPDELTCWVVMRQAPPLPFLPAEWHGKEVVVLAMCYCGDIAAGEKATERLRAIGKPIADVVGPVPFTGWQ
QAFDPLLTPGARNYWKSQDFASLSDATIEVLLNAVRKLPGPECEVFVGHVGGAAGRIATEATAFPQRSSHFVMNVHARWR
EAGMDASCTGWARELFEATKPHAVGTAYINFMPEDEADRVEMAYGANYARLAEIKRRYDPNNLFRMNQNVKPLAAVRAA
>Mature_479_residues
MDNLNLTTLQKGQTMVNDVAIDAFAAGFRGKLLTSKDMDYNEARAIWNAMIDRRPGLIGRCAGAADVVRAVKFARDNDLL
VSVRGGGHGIAGNAVCEGGVVIDLSAMKSVRVDPETRRARIEPGATLADVDQETLTFGLVLPTGINSTTGIAGLTLGGGF
GWLTRKFGLTIDNLVSVDVVTADGELVKASETERPDLFWALRGGGGNFGVVTSFEFQLNPLHSDVLAGLVVHPFADAERV
LREYRQALEAAPDELTCWVVMRQAPPLPFLPAEWHGKEVVVLAMCYCGDIAAGEKATERLRAIGKPIADVVGPVPFTGWQ
QAFDPLLTPGARNYWKSQDFASLSDATIEVLLNAVRKLPGPECEVFVGHVGGAAGRIATEATAFPQRSSHFVMNVHARWR
EAGMDASCTGWARELFEATKPHAVGTAYINFMPEDEADRVEMAYGANYARLAEIKRRYDPNNLFRMNQNVKPLAAVRAA

Specific function: Unknown

COG id: COG0277

COG function: function code C; FAD/FMN-containing dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding PCMH-type domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012951
- InterPro:   IPR016166
- InterPro:   IPR016167
- InterPro:   IPR016168
- InterPro:   IPR006094
- InterPro:   IPR006093 [H]

Pfam domain/function: PF08031 BBE; PF01565 FAD_binding_4 [H]

EC number: =1.5.3.6 [H]

Molecular weight: Translated: 51798; Mature: 51798

Theoretical pI: Translated: 5.71; Mature: 5.71

Prosite motif: PS00862 OX2_COVAL_FAD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNLNLTTLQKGQTMVNDVAIDAFAAGFRGKLLTSKDMDYNEARAIWNAMIDRRPGLIGR
CCCCCCEEECCCCHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEE
CAGAADVVRAVKFARDNDLLVSVRGGGHGIAGNAVCEGGVVIDLSAMKSVRVDPETRRAR
CCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEECCCEEEEEHHHHHCCCCCHHHHEE
IEPGATLADVDQETLTFGLVLPTGINSTTGIAGLTLGGGFGWLTRKFGLTIDNLVSVDVV
CCCCCEEECCCCCCEEEEEEEECCCCCCCCCEEEEECCCHHHHHHHHCCCHHHEEEEEEE
TADGELVKASETERPDLFWALRGGGGNFGVVTSFEFQLNPLHSDVLAGLVVHPFADAERV
ECCCCEEECCCCCCCCEEEEEECCCCCEEEEEEEEEEECCHHHHHHHHHHHCCCCCHHHH
LREYRQALEAAPDELTCWVVMRQAPPLPFLPAEWHGKEVVVLAMCYCGDIAAGEKATERL
HHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEHHCCCCCCHHHHHHH
RAIGKPIADVVGPVPFTGWQQAFDPLLTPGARNYWKSQDFASLSDATIEVLLNAVRKLPG
HHHCCCHHHHHCCCCCCCHHHHHHHHCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHCCC
PECEVFVGHVGGAAGRIATEATAFPQRSSHFVMNVHARWREAGMDASCTGWARELFEATK
CCEEEEEEECCCCCCCHHHHHHCCCCCCCCEEEEEEHHHHHCCCCCCCHHHHHHHHHHCC
PHAVGTAYINFMPEDEADRVEMAYGANYARLAEIKRRYDPNNLFRMNQNVKPLAAVRAA
CCCEEEEEEEECCCCCCCCEEHHHCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHCCC
>Mature Secondary Structure
MDNLNLTTLQKGQTMVNDVAIDAFAAGFRGKLLTSKDMDYNEARAIWNAMIDRRPGLIGR
CCCCCCEEECCCCHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEE
CAGAADVVRAVKFARDNDLLVSVRGGGHGIAGNAVCEGGVVIDLSAMKSVRVDPETRRAR
CCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEECCCEEEEEHHHHHCCCCCHHHHEE
IEPGATLADVDQETLTFGLVLPTGINSTTGIAGLTLGGGFGWLTRKFGLTIDNLVSVDVV
CCCCCEEECCCCCCEEEEEEEECCCCCCCCCEEEEECCCHHHHHHHHCCCHHHEEEEEEE
TADGELVKASETERPDLFWALRGGGGNFGVVTSFEFQLNPLHSDVLAGLVVHPFADAERV
ECCCCEEECCCCCCCCEEEEEECCCCCEEEEEEEEEEECCHHHHHHHHHHHCCCCCHHHH
LREYRQALEAAPDELTCWVVMRQAPPLPFLPAEWHGKEVVVLAMCYCGDIAAGEKATERL
HHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEHHCCCCCCHHHHHHH
RAIGKPIADVVGPVPFTGWQQAFDPLLTPGARNYWKSQDFASLSDATIEVLLNAVRKLPG
HHHCCCHHHHHCCCCCCCHHHHHHHHCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHCCC
PECEVFVGHVGGAAGRIATEATAFPQRSSHFVMNVHARWREAGMDASCTGWARELFEATK
CCEEEEEEECCCCCCCHHHHHHCCCCCCCCEEEEEEHHHHHCCCCCCCHHHHHHHHHHCC
PHAVGTAYINFMPEDEADRVEMAYGANYARLAEIKRRYDPNNLFRMNQNVKPLAAVRAA
CCCEEEEEEEECCCCCCCCEEHHHCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3622516; 2680607; 2115879 [H]