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The map label for this gene is ycfQ [H]

Identifier: 209548709

GI number: 209548709

Start: 1130512

End: 1131144

Strand: Direct

Name: ycfQ [H]

Synonym: Rleg2_1106

Alternate gene names: 209548709

Gene position: 1130512-1131144 (Clockwise)

Preceding gene: 209548707

Following gene: 209548711

Centisome position: 24.91

GC content: 65.09

Gene sequence:

>633_bases
GTGGAAAATAATGCCGACGTAAAAAATCCTCCCGCCCGCCGCCGCGGCCGCCCACCGGCCTTCGACCGCGAGGTGGTTCT
GGCGGCCGCAAGGGAAACCTTTTGGGCGCATGGATACGAGGGTGCCTCGATCGCCGATCTCACCGCCGCTATGGGCATCA
CGCCGCAAAGCCTCTATGCCGCCTTCAATTCGAAGGCCGAGCTCTATCGCGCGGCCCTGCAGCAATACCGGATGCTGGGA
GCCGACACGTTTTCCGCCCTCGGCGAGCCGATCGATACCGTGTCCGCCTTCGAGCGTATATTGCAAGGCTCGGCCGCGAT
CTTCGCGGCGCCTGAGCATCCGAAGGGCTGCATGATCTCGACGGCGGTGCTGAATTGCGCCAGCGAGAACGATGGTGTCG
CCGATCATGTTGCCGCGCTGCGCCGCCAGTCGCTGAGCGGATTTGCAGCAAGGATCGAGCGCGGCATCCGCGACGGCGAT
CTCAAGGCCGGGACCAATGCCGGCGCGTTGGCCCGGTTCGTTGCCGCGATCGTCCAGGGCATGTCGGTGCAGGCGAGGGA
CGGGGCGTCTCTTGAGGAGTTGCTCGATATCGCAACCCTCGCCATCGCCGAAGTCTCCCGCCACCGCGTCTGA

Upstream 100 bases:

>100_bases
CTGCCTTTTCGAGGGGAAGACTCATCAGATTAAACCTTCTATAATCACAATGACCGTTCCTGAATATAGCAAGCCGTCTC
GAATTTCTAGAGTGATCACT

Downstream 100 bases:

>100_bases
AAACGAAAAAGACCCGGCAACGGAATTGCCGGGCCTTTCTTTAAGGAAATCAAACGATCAGTCGTTGGCCGAAACCTTGA
CGCCGAGCACCTGCGGCAGC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 210

Protein sequence:

>210_residues
MENNADVKNPPARRRGRPPAFDREVVLAAARETFWAHGYEGASIADLTAAMGITPQSLYAAFNSKAELYRAALQQYRMLG
ADTFSALGEPIDTVSAFERILQGSAAIFAAPEHPKGCMISTAVLNCASENDGVADHVAALRRQSLSGFAARIERGIRDGD
LKAGTNAGALARFVAAIVQGMSVQARDGASLEELLDIATLAIAEVSRHRV

Sequences:

>Translated_210_residues
MENNADVKNPPARRRGRPPAFDREVVLAAARETFWAHGYEGASIADLTAAMGITPQSLYAAFNSKAELYRAALQQYRMLG
ADTFSALGEPIDTVSAFERILQGSAAIFAAPEHPKGCMISTAVLNCASENDGVADHVAALRRQSLSGFAARIERGIRDGD
LKAGTNAGALARFVAAIVQGMSVQARDGASLEELLDIATLAIAEVSRHRV
>Mature_210_residues
MENNADVKNPPARRRGRPPAFDREVVLAAARETFWAHGYEGASIADLTAAMGITPQSLYAAFNSKAELYRAALQQYRMLG
ADTFSALGEPIDTVSAFERILQGSAAIFAAPEHPKGCMISTAVLNCASENDGVADHVAALRRQSLSGFAARIERGIRDGD
LKAGTNAGALARFVAAIVQGMSVQARDGASLEELLDIATLAIAEVSRHRV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081833, Length=191, Percent_Identity=34.0314136125654, Blast_Score=107, Evalue=6e-25,
Organism=Escherichia coli, GI87082397, Length=198, Percent_Identity=25.7575757575758, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22312; Mature: 22312

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENNADVKNPPARRRGRPPAFDREVVLAAARETFWAHGYEGASIADLTAAMGITPQSLYA
CCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHH
AFNSKAELYRAALQQYRMLGADTFSALGEPIDTVSAFERILQGSAAIFAAPEHPKGCMIS
HHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHH
TAVLNCASENDGVADHVAALRRQSLSGFAARIERGIRDGDLKAGTNAGALARFVAAIVQG
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHC
MSVQARDGASLEELLDIATLAIAEVSRHRV
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MENNADVKNPPARRRGRPPAFDREVVLAAARETFWAHGYEGASIADLTAAMGITPQSLYA
CCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHH
AFNSKAELYRAALQQYRMLGADTFSALGEPIDTVSAFERILQGSAAIFAAPEHPKGCMIS
HHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHH
TAVLNCASENDGVADHVAALRRQSLSGFAARIERGIRDGDLKAGTNAGALARFVAAIVQG
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHC
MSVQARDGASLEELLDIATLAIAEVSRHRV
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]