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The map label for this gene is yhcS [C]

Identifier: 209548512

GI number: 209548512

Start: 924911

End: 925837

Strand: Reverse

Name: yhcS [C]

Synonym: Rleg2_0909

Alternate gene names: 209548512

Gene position: 925837-924911 (Counterclockwise)

Preceding gene: 209548532

Following gene: 209548509

Centisome position: 20.4

GC content: 64.83

Gene sequence:

>927_bases
ATGGACCGCCTTGACGCCATGACCGTGCTTCTTGCCGTTGTCGAACAGGGCAGCCTATCGGCTGCCTCCCGGCATTTGCG
ATCGCCGCTCGCCACCGTCAGCCGCAAGGTTTCCGAGCTGGAAGCCCATCTGAACGCCCAGCTGCTGCAGAGAAGCAACC
GGACGGTCACGCTGACGGAAGCCGGCCGCTCCTATGTGGAGGCGGCGCGGGAAATTCTCGATCGGGTGGAAGAGGCCGAA
AGGACGGCGGCCGGTGAATACAGCGTGCCGAAGGGCGCGCTGATAATGACCGCGCCGATCGTCTTCGGGCGCCTGCATGT
CCTGCCTGTGGTGGTGGACTTCCTGAAGGCCTATCCCGATATCAATCTGCGGCTGATGCTTGGCGACCGGCTGTCGAACC
TCGTCGAGGATCATATCGATGTGGCGCTTCGGATCGGCAACCTGCCGGACAGCAACCTGATCGCCACCAGGCTCGGCGCG
ATCCGCCGGACGGTCTATGCCAGCCCAGATTATCTCGCACGGCAGGTCACGCCTCGGCATCCGGCCGACCTTGCTGCGCA
TGACTGCATCACCTTCGACAGCATGGCCTCGACGCTGAGCTGGACATTCACGGAGGGAAAACGCGGTCTCACCGTGCCGA
TCCGCTCACGGCTTGCCGTCAACACCGCCGAGGCTGCGGTCGATGCGGCGGTCGCCGGCCTCGGTATCACCCGGGTTCTG
TCCTACCAGGCCGCACGCGCCGAGACGGCGGGCCTGCTTGCGCCACTGCTTGCCGATTTCGAACCGCCGCCGGCACCGGT
GCATCTCGTCTATCCCGCGCAGGGATTGGTGCCCCTGAAATTGCGGGCGCTCATCGATTTCGCCACGCCGCGGCTGCGCG
CGACGCTGAACAGATCTCAGGCGAGTTTGCCCTCTTCCGCCTTATAG

Upstream 100 bases:

>100_bases
GGCCGCCTGCGAACCATCTGCGGAGGAATGTATTGCCTTCCATTGGATTGCAGTAGAATGCTAATCTGGAAGGCATATTC
CCAGTTTGCGGAAGGATAGA

Downstream 100 bases:

>100_bases
AAATACTGGCTGGCGACCAGCCAGCCTTTCAGCGGCCGCAACGGCGGAATGCAGGTGGCGAGCATGAAGGGGCCGGTGAC
CAGAAGCTGCACCCAGATCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MDRLDAMTVLLAVVEQGSLSAASRHLRSPLATVSRKVSELEAHLNAQLLQRSNRTVTLTEAGRSYVEAAREILDRVEEAE
RTAAGEYSVPKGALIMTAPIVFGRLHVLPVVVDFLKAYPDINLRLMLGDRLSNLVEDHIDVALRIGNLPDSNLIATRLGA
IRRTVYASPDYLARQVTPRHPADLAAHDCITFDSMASTLSWTFTEGKRGLTVPIRSRLAVNTAEAAVDAAVAGLGITRVL
SYQAARAETAGLLAPLLADFEPPPAPVHLVYPAQGLVPLKLRALIDFATPRLRATLNRSQASLPSSAL

Sequences:

>Translated_308_residues
MDRLDAMTVLLAVVEQGSLSAASRHLRSPLATVSRKVSELEAHLNAQLLQRSNRTVTLTEAGRSYVEAAREILDRVEEAE
RTAAGEYSVPKGALIMTAPIVFGRLHVLPVVVDFLKAYPDINLRLMLGDRLSNLVEDHIDVALRIGNLPDSNLIATRLGA
IRRTVYASPDYLARQVTPRHPADLAAHDCITFDSMASTLSWTFTEGKRGLTVPIRSRLAVNTAEAAVDAAVAGLGITRVL
SYQAARAETAGLLAPLLADFEPPPAPVHLVYPAQGLVPLKLRALIDFATPRLRATLNRSQASLPSSAL
>Mature_308_residues
MDRLDAMTVLLAVVEQGSLSAASRHLRSPLATVSRKVSELEAHLNAQLLQRSNRTVTLTEAGRSYVEAAREILDRVEEAE
RTAAGEYSVPKGALIMTAPIVFGRLHVLPVVVDFLKAYPDINLRLMLGDRLSNLVEDHIDVALRIGNLPDSNLIATRLGA
IRRTVYASPDYLARQVTPRHPADLAAHDCITFDSMASTLSWTFTEGKRGLTVPIRSRLAVNTAEAAVDAAVAGLGITRVL
SYQAARAETAGLLAPLLADFEPPPAPVHLVYPAQGLVPLKLRALIDFATPRLRATLNRSQASLPSSAL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789639, Length=290, Percent_Identity=31.7241379310345, Blast_Score=142, Evalue=3e-35,
Organism=Escherichia coli, GI1786401, Length=293, Percent_Identity=32.7645051194539, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI145693193, Length=274, Percent_Identity=31.3868613138686, Blast_Score=128, Evalue=4e-31,
Organism=Escherichia coli, GI1787128, Length=280, Percent_Identity=27.5, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1789440, Length=294, Percent_Identity=28.9115646258503, Blast_Score=125, Evalue=5e-30,
Organism=Escherichia coli, GI87081978, Length=285, Percent_Identity=29.4736842105263, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1787589, Length=269, Percent_Identity=27.5092936802974, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1789173, Length=234, Percent_Identity=29.0598290598291, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788706, Length=239, Percent_Identity=24.6861924686192, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1790011, Length=316, Percent_Identity=23.4177215189873, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI87082024, Length=263, Percent_Identity=24.7148288973384, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1787601, Length=155, Percent_Identity=30.3225806451613, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33272; Mature: 33272

Theoretical pI: Translated: 8.97; Mature: 8.97

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRLDAMTVLLAVVEQGSLSAASRHLRSPLATVSRKVSELEAHLNAQLLQRSNRTVTLTE
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHH
AGRSYVEAAREILDRVEEAERTAAGEYSVPKGALIMTAPIVFGRLHVLPVVVDFLKAYPD
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCC
INLRLMLGDRLSNLVEDHIDVALRIGNLPDSNLIATRLGAIRRTVYASPDYLARQVTPRH
CEEEEEECHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCC
PADLAAHDCITFDSMASTLSWTFTEGKRGLTVPIRSRLAVNTAEAAVDAAVAGLGITRVL
CHHHHHHHHHHHHHHHHHHEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
SYQAARAETAGLLAPLLADFEPPPAPVHLVYPAQGLVPLKLRALIDFATPRLRATLNRSQ
HHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCHHHHHHHHHHH
ASLPSSAL
HCCCCCCC
>Mature Secondary Structure
MDRLDAMTVLLAVVEQGSLSAASRHLRSPLATVSRKVSELEAHLNAQLLQRSNRTVTLTE
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHH
AGRSYVEAAREILDRVEEAERTAAGEYSVPKGALIMTAPIVFGRLHVLPVVVDFLKAYPD
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCC
INLRLMLGDRLSNLVEDHIDVALRIGNLPDSNLIATRLGAIRRTVYASPDYLARQVTPRH
CEEEEEECHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCC
PADLAAHDCITFDSMASTLSWTFTEGKRGLTVPIRSRLAVNTAEAAVDAAVAGLGITRVL
CHHHHHHHHHHHHHHHHHHEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
SYQAARAETAGLLAPLLADFEPPPAPVHLVYPAQGLVPLKLRALIDFATPRLRATLNRSQ
HHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCHHHHHHHHHHH
ASLPSSAL
HCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]