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The map label for this gene is ltrA [H]

Identifier: 209548041

GI number: 209548041

Start: 445405

End: 446322

Strand: Reverse

Name: ltrA [H]

Synonym: Rleg2_0434

Alternate gene names: 209548041

Gene position: 446322-445405 (Counterclockwise)

Preceding gene: 209548045

Following gene: 209548037

Centisome position: 9.84

GC content: 61.55

Gene sequence:

>918_bases
ATGAACAAATTTCCCGATTTCGAGGGACTGGCGATGTTCGCAAAGGTCGCCGAGGAGCGTTCTTTCGCTCGGGCTGCGCA
GACGCTCGGTGTGTCGGTGCCTACGGTTTCGCGGGCCGTAAGCCGTCTTGAGCAGAGGCTGGGCGCAAGGCTCTTCAACC
GCACCTCTCGACAACTCGCTTTGACCGATTTCGGCCTGCGACTGGTCGACAGCGCCGCACGTATCTATGCCGAGGCCGAG
ATGGCAGAGGACGCCGCCCGGGAGCTTGCCACCCGGCCGAAGGGGCTGATCAGGCTTGCCGCGCCGATGGACTTTGGGAC
ACGCTGGCTGCCCCCGATCCTGCCTGACTTTTTCGAGCTCTTTCCGGAGATTTCCATCGACCTGCATATGAGCGATGCTG
TCGTCGATATCGTGGGAGACGGCTTCGATGCGGCACTCAGAATCGCGGTACTGCCGGATTCGTCATTGGTCGCGCGCAGG
CTGGCGCCGGTGGATCGGTTCATTCTCGCGGCACCCGCATACCTTAAACAGTACGGCTTGCCGGAACATCCCCGCGAGCT
AACGGCTCACCATTGCCTCGGATACGCCTACAGGGCGCGACAGGATGTCTGGCGCCTGCGCAATAGCGAAGGCAAGGAGG
AGGTCATCTCACCAAGCGGCTCTCTCAGGGCCACCAATTCGCAAGCATTGGTGCCAATGGCGCTACGGGGCCTCGGGATC
ATCGAACTCCCCGAGTTTCTCGCGCATGACTATCTCGTCGACGGCCAGTTGACGCCAATCCTTCCCGACTGGACGCTGCC
GACCGGCGCACTGTATTTCGTCACACCTTCGGCTCGGAGCCGGCCAGCGAAGGTCGAGGTCCTTGCCGATTTCATGATGG
CGAGACTGTCAAATCCGGTTTGGCGGAGGAGGAGCTGA

Upstream 100 bases:

>100_bases
TGTGTCATTGTCGTCTCCTTTAGCTCGACTGAAGCTGAGATATGGACGAGGATATCGTTTCGGAATAGAAAGAATTGAAA
GCCATTGTTTCAGGAATGAA

Downstream 100 bases:

>100_bases
CGCCGCCTCAATCCCGGCCTGGCGACAGCCAACGGGCGATGGCAAGCCTGACAAGGACGATGCACGAGATGGCGAGGCTC
GCGAATTTCAGCCTTGTCAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MNKFPDFEGLAMFAKVAEERSFARAAQTLGVSVPTVSRAVSRLEQRLGARLFNRTSRQLALTDFGLRLVDSAARIYAEAE
MAEDAARELATRPKGLIRLAAPMDFGTRWLPPILPDFFELFPEISIDLHMSDAVVDIVGDGFDAALRIAVLPDSSLVARR
LAPVDRFILAAPAYLKQYGLPEHPRELTAHHCLGYAYRARQDVWRLRNSEGKEEVISPSGSLRATNSQALVPMALRGLGI
IELPEFLAHDYLVDGQLTPILPDWTLPTGALYFVTPSARSRPAKVEVLADFMMARLSNPVWRRRS

Sequences:

>Translated_305_residues
MNKFPDFEGLAMFAKVAEERSFARAAQTLGVSVPTVSRAVSRLEQRLGARLFNRTSRQLALTDFGLRLVDSAARIYAEAE
MAEDAARELATRPKGLIRLAAPMDFGTRWLPPILPDFFELFPEISIDLHMSDAVVDIVGDGFDAALRIAVLPDSSLVARR
LAPVDRFILAAPAYLKQYGLPEHPRELTAHHCLGYAYRARQDVWRLRNSEGKEEVISPSGSLRATNSQALVPMALRGLGI
IELPEFLAHDYLVDGQLTPILPDWTLPTGALYFVTPSARSRPAKVEVLADFMMARLSNPVWRRRS
>Mature_305_residues
MNKFPDFEGLAMFAKVAEERSFARAAQTLGVSVPTVSRAVSRLEQRLGARLFNRTSRQLALTDFGLRLVDSAARIYAEAE
MAEDAARELATRPKGLIRLAAPMDFGTRWLPPILPDFFELFPEISIDLHMSDAVVDIVGDGFDAALRIAVLPDSSLVARR
LAPVDRFILAAPAYLKQYGLPEHPRELTAHHCLGYAYRARQDVWRLRNSEGKEEVISPSGSLRATNSQALVPMALRGLGI
IELPEFLAHDYLVDGQLTPILPDWTLPTGALYFVTPSARSRPAKVEVLADFMMARLSNPVWRRRS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=289, Percent_Identity=33.9100346020761, Blast_Score=161, Evalue=6e-41,
Organism=Escherichia coli, GI1789440, Length=305, Percent_Identity=29.5081967213115, Blast_Score=141, Evalue=6e-35,
Organism=Escherichia coli, GI87081978, Length=293, Percent_Identity=30.3754266211604, Blast_Score=135, Evalue=4e-33,
Organism=Escherichia coli, GI1789639, Length=281, Percent_Identity=29.1814946619217, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI1787128, Length=289, Percent_Identity=28.3737024221453, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI145693193, Length=297, Percent_Identity=28.956228956229, Blast_Score=130, Evalue=8e-32,
Organism=Escherichia coli, GI1787589, Length=276, Percent_Identity=28.6231884057971, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1790011, Length=304, Percent_Identity=25.3289473684211, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1789173, Length=300, Percent_Identity=25, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI157672245, Length=140, Percent_Identity=32.8571428571429, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1790399, Length=124, Percent_Identity=32.258064516129, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1788748, Length=123, Percent_Identity=30.8943089430894, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1788706, Length=285, Percent_Identity=23.859649122807, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790262, Length=244, Percent_Identity=27.8688524590164, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI145693105, Length=154, Percent_Identity=24.025974025974, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1786448, Length=296, Percent_Identity=25, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1790208, Length=251, Percent_Identity=27.8884462151394, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33940; Mature: 33940

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKFPDFEGLAMFAKVAEERSFARAAQTLGVSVPTVSRAVSRLEQRLGARLFNRTSRQLA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEE
LTDFGLRLVDSAARIYAEAEMAEDAARELATRPKGLIRLAAPMDFGTRWLPPILPDFFEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHH
FPEISIDLHMSDAVVDIVGDGFDAALRIAVLPDSSLVARRLAPVDRFILAAPAYLKQYGL
CCCCEEEEEECCCEEEHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCHHHHHHCCC
PEHPRELTAHHCLGYAYRARQDVWRLRNSEGKEEVISPSGSLRATNSQALVPMALRGLGI
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCEEECCCCCHHHHHHHCCCH
IELPEFLAHDYLVDGQLTPILPDWTLPTGALYFVTPSARSRPAKVEVLADFMMARLSNPV
HHHHHHHHHHEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCH
WRRRS
HCCCC
>Mature Secondary Structure
MNKFPDFEGLAMFAKVAEERSFARAAQTLGVSVPTVSRAVSRLEQRLGARLFNRTSRQLA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEE
LTDFGLRLVDSAARIYAEAEMAEDAARELATRPKGLIRLAAPMDFGTRWLPPILPDFFEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHH
FPEISIDLHMSDAVVDIVGDGFDAALRIAVLPDSSLVARRLAPVDRFILAAPAYLKQYGL
CCCCEEEEEECCCEEEHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCHHHHHHCCC
PEHPRELTAHHCLGYAYRARQDVWRLRNSEGKEEVISPSGSLRATNSQALVPMALRGLGI
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCEEECCCCCHHHHHHHCCCH
IELPEFLAHDYLVDGQLTPILPDWTLPTGALYFVTPSARSRPAKVEVLADFMMARLSNPV
HHHHHHHHHHEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCH
WRRRS
HCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8748036 [H]