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The map label for this gene is rfbB [H]

Identifier: 209548015

GI number: 209548015

Start: 418897

End: 420216

Strand: Direct

Name: rfbB [H]

Synonym: Rleg2_0407

Alternate gene names: 209548015

Gene position: 418897-420216 (Clockwise)

Preceding gene: 209548014

Following gene: 209548016

Centisome position: 9.23

GC content: 56.82

Gene sequence:

>1320_bases
ATGAACGACATCGTTATTCGAGCAGAGCACGTCAGCAAGCTCTATCGTCTTGGCGTGATCAATCACGGCACCCTCTATCG
CGACCTTCAAAGCTGGTGGGCGAAGTGGCGCAATCTTCCGGATCCGAACGTCTCGGTATCCGACCATACGTCCGACCGCG
GTGCGCAGTCGCGGCTGAAGGGAGACATCTTCCATGCGCTGGATGATGTCTCTTTCGAAGTCGGACAGGGCGAGATCGTG
GGGATTATCGGCAGGAACGGGGCCGGAAAATCCACGCTGTTGAAGGTGATGTCACGGATCACCATGCCCAATTCCGGCTT
CATCGGCATACGAGGCAGAATTGCCAGCCTGCTTGAGGTCGGCACCGGATTTCATCCGGAACTCACCGGCCGGGAGAACG
TCTATCTCAATGGCGCCATCCTCGGCATGAGCCGTGCCGAGGTCAGGTCGAAATTCGATGAAATCGTCGAGTTTGCGGAG
ATCGGCGAATTTATCGACACGCCGGTGAAGCGGTATTCGTCCGGCATGTATGTGCGTCTGGCCTTCGCCGTCGCGGCGCA
TCTCGAGCCGGAAATACTGCTGGTCGACGAGGTATTGGCCGTCGGCGACGTCAACTTCCAGAACAAATGCATGGGGCGCA
TGCAGGAGGTCACGAAGGCCGGCCGAACGATTATCTTCGTCAGCCACAATATGACGGCGATCAGTAGCATCTGCCCAAAA
TCGATTCTGATGGCCGATGGCAAGGTCGCTGCGATGGGCGATACGGCAGATGTGATAAAAGCCTATCTCGATCGCCCGGA
ATTCGGCGGCACCGCAAGTTACTCGGTCAATCCCGAGGACGTCGAAGGCAAGGCGGTTATATGCCGTGTCGCAGTGTTGA
ATGAGAAGGACGAGGCTTCGGGAACACTGGAACTGTCGAAGGGATTTTCCGTCGAGGTCGAGTACGAGCTGAGGGAGCCT
CTTTCTGGTCTCTCGGTCGGGATGCAGATCATGATGGAGGACGGCTATACCACCCTCGTCAGCCTTTCCGATCCTGAGCT
CGACGTCGGGCGCTTGGATACCCGGCCAGCCGGTTATTATCGCGCCCGGGTCAAATTTCCCGGATATCTTCTCAATACCG
GCACCTTCTACCTGCGACTGGGCATATCGAGCCGGTTCTCGATATATTCGGTCGCCGAGGGCATCCGGTTCGACGTGGAG
GATAATGTCGGAATTATCCAGATGCTGGGTCAGCAACGGAAGCCATCGATTTCGGCGATACAGCTGCCTTGGGAGGTTGA
GAAGCTCTTCCTGCGCGATTCTGAGGGTGTGTTGAAATGA

Upstream 100 bases:

>100_bases
TCGGTCTTTGCCTCGCCAATTTTGCAGTGACGATCGCAATCACCCTGTTCGGCCTGGCACTTTTTTCGCGGGCGGAAGCC
AATGCGATGGATACCGTCTG

Downstream 100 bases:

>100_bases
AGAAAGCGCTTGTCACCGGGGCAGATGGGTTCATCGGTTCTCATCTCGTCGAAACGCTGGTCAGGTCGGGTGTCGAGGTT
CGCGCCCTCTGCCAGTATAA

Product: ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 439; Mature: 439

Protein sequence:

>439_residues
MNDIVIRAEHVSKLYRLGVINHGTLYRDLQSWWAKWRNLPDPNVSVSDHTSDRGAQSRLKGDIFHALDDVSFEVGQGEIV
GIIGRNGAGKSTLLKVMSRITMPNSGFIGIRGRIASLLEVGTGFHPELTGRENVYLNGAILGMSRAEVRSKFDEIVEFAE
IGEFIDTPVKRYSSGMYVRLAFAVAAHLEPEILLVDEVLAVGDVNFQNKCMGRMQEVTKAGRTIIFVSHNMTAISSICPK
SILMADGKVAAMGDTADVIKAYLDRPEFGGTASYSVNPEDVEGKAVICRVAVLNEKDEASGTLELSKGFSVEVEYELREP
LSGLSVGMQIMMEDGYTTLVSLSDPELDVGRLDTRPAGYYRARVKFPGYLLNTGTFYLRLGISSRFSIYSVAEGIRFDVE
DNVGIIQMLGQQRKPSISAIQLPWEVEKLFLRDSEGVLK

Sequences:

>Translated_439_residues
MNDIVIRAEHVSKLYRLGVINHGTLYRDLQSWWAKWRNLPDPNVSVSDHTSDRGAQSRLKGDIFHALDDVSFEVGQGEIV
GIIGRNGAGKSTLLKVMSRITMPNSGFIGIRGRIASLLEVGTGFHPELTGRENVYLNGAILGMSRAEVRSKFDEIVEFAE
IGEFIDTPVKRYSSGMYVRLAFAVAAHLEPEILLVDEVLAVGDVNFQNKCMGRMQEVTKAGRTIIFVSHNMTAISSICPK
SILMADGKVAAMGDTADVIKAYLDRPEFGGTASYSVNPEDVEGKAVICRVAVLNEKDEASGTLELSKGFSVEVEYELREP
LSGLSVGMQIMMEDGYTTLVSLSDPELDVGRLDTRPAGYYRARVKFPGYLLNTGTFYLRLGISSRFSIYSVAEGIRFDVE
DNVGIIQMLGQQRKPSISAIQLPWEVEKLFLRDSEGVLK
>Mature_439_residues
MNDIVIRAEHVSKLYRLGVINHGTLYRDLQSWWAKWRNLPDPNVSVSDHTSDRGAQSRLKGDIFHALDDVSFEVGQGEIV
GIIGRNGAGKSTLLKVMSRITMPNSGFIGIRGRIASLLEVGTGFHPELTGRENVYLNGAILGMSRAEVRSKFDEIVEFAE
IGEFIDTPVKRYSSGMYVRLAFAVAAHLEPEILLVDEVLAVGDVNFQNKCMGRMQEVTKAGRTIIFVSHNMTAISSICPK
SILMADGKVAAMGDTADVIKAYLDRPEFGGTASYSVNPEDVEGKAVICRVAVLNEKDEASGTLELSKGFSVEVEYELREP
LSGLSVGMQIMMEDGYTTLVSLSDPELDVGRLDTRPAGYYRARVKFPGYLLNTGTFYLRLGISSRFSIYSVAEGIRFDVE
DNVGIIQMLGQQRKPSISAIQLPWEVEKLFLRDSEGVLK

Specific function: May form an ATP-driven O-antigen export apparatus, in association with RfbA [H]

COG id: COG1134

COG function: function code GM; ABC-type polysaccharide/polyol phosphate transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI27436953, Length=194, Percent_Identity=28.3505154639175, Blast_Score=93, Evalue=5e-19,
Organism=Homo sapiens, GI153792144, Length=202, Percent_Identity=27.2277227722772, Blast_Score=91, Evalue=3e-18,
Organism=Homo sapiens, GI27477115, Length=216, Percent_Identity=26.8518518518519, Blast_Score=84, Evalue=3e-16,
Organism=Homo sapiens, GI6005701, Length=209, Percent_Identity=25.3588516746411, Blast_Score=82, Evalue=1e-15,
Organism=Homo sapiens, GI30795238, Length=205, Percent_Identity=25.3658536585366, Blast_Score=82, Evalue=1e-15,
Organism=Homo sapiens, GI27881501, Length=205, Percent_Identity=25.3658536585366, Blast_Score=82, Evalue=1e-15,
Organism=Homo sapiens, GI45446740, Length=209, Percent_Identity=26.7942583732057, Blast_Score=79, Evalue=1e-14,
Organism=Homo sapiens, GI47078218, Length=209, Percent_Identity=26.7942583732057, Blast_Score=79, Evalue=1e-14,
Organism=Homo sapiens, GI150417984, Length=206, Percent_Identity=24.7572815533981, Blast_Score=79, Evalue=1e-14,
Organism=Homo sapiens, GI31657092, Length=208, Percent_Identity=26.9230769230769, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI105990541, Length=199, Percent_Identity=26.6331658291457, Blast_Score=76, Evalue=6e-14,
Organism=Homo sapiens, GI27262624, Length=197, Percent_Identity=27.4111675126904, Blast_Score=74, Evalue=4e-13,
Organism=Homo sapiens, GI27262626, Length=197, Percent_Identity=27.4111675126904, Blast_Score=74, Evalue=4e-13,
Organism=Homo sapiens, GI21536376, Length=199, Percent_Identity=25.1256281407035, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI116734710, Length=321, Percent_Identity=22.4299065420561, Blast_Score=66, Evalue=7e-11,
Organism=Escherichia coli, GI1787759, Length=232, Percent_Identity=28.8793103448276, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1790739, Length=238, Percent_Identity=29.8319327731092, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI87081709, Length=210, Percent_Identity=25.7142857142857, Blast_Score=86, Evalue=5e-18,
Organism=Escherichia coli, GI87081791, Length=222, Percent_Identity=24.3243243243243, Blast_Score=83, Evalue=4e-17,
Organism=Escherichia coli, GI1787089, Length=211, Percent_Identity=26.0663507109005, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI48994943, Length=208, Percent_Identity=26.4423076923077, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1790467, Length=231, Percent_Identity=25.5411255411255, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1787712, Length=293, Percent_Identity=24.9146757679181, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI1786398, Length=211, Percent_Identity=25.5924170616114, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI1788761, Length=198, Percent_Identity=23.7373737373737, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1788210, Length=203, Percent_Identity=28.5714285714286, Blast_Score=75, Evalue=9e-15,
Organism=Escherichia coli, GI1787029, Length=209, Percent_Identity=26.3157894736842, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1790525, Length=217, Percent_Identity=29.4930875576037, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI1788225, Length=234, Percent_Identity=26.0683760683761, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1789032, Length=209, Percent_Identity=24.4019138755981, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787547, Length=217, Percent_Identity=26.7281105990783, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI48995001, Length=209, Percent_Identity=24.4019138755981, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1788450, Length=250, Percent_Identity=24, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI1789962, Length=245, Percent_Identity=25.3061224489796, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI87081834, Length=225, Percent_Identity=25.7777777777778, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1786803, Length=228, Percent_Identity=25, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI87081782, Length=209, Percent_Identity=27.2727272727273, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1787792, Length=217, Percent_Identity=27.1889400921659, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1787370, Length=196, Percent_Identity=22.4489795918367, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1786319, Length=185, Percent_Identity=24.8648648648649, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788897, Length=206, Percent_Identity=23.7864077669903, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI1786703, Length=200, Percent_Identity=26.5, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1786253, Length=210, Percent_Identity=28.0952380952381, Blast_Score=62, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI115533608, Length=202, Percent_Identity=25.7425742574257, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17565586, Length=210, Percent_Identity=24.7619047619048, Blast_Score=75, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17510237, Length=234, Percent_Identity=23.0769230769231, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24666092, Length=277, Percent_Identity=27.0758122743682, Blast_Score=80, Evalue=3e-15,
Organism=Drosophila melanogaster, GI116007184, Length=197, Percent_Identity=25.3807106598985, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI221500365, Length=187, Percent_Identity=25.668449197861, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24643674, Length=204, Percent_Identity=25, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI28573571, Length=314, Percent_Identity=23.5668789808917, Blast_Score=72, Evalue=7e-13,
Organism=Drosophila melanogaster, GI221512771, Length=202, Percent_Identity=25.7425742574257, Blast_Score=71, Evalue=2e-12,
Organism=Drosophila melanogaster, GI28573573, Length=265, Percent_Identity=24.5283018867925, Blast_Score=68, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 48404; Mature: 48404

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDIVIRAEHVSKLYRLGVINHGTLYRDLQSWWAKWRNLPDPNVSVSDHTSDRGAQSRLK
CCCEEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH
GDIFHALDDVSFEVGQGEIVGIIGRNGAGKSTLLKVMSRITMPNSGFIGIRGRIASLLEV
HHHHHHHHCCEEECCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHH
GTGFHPELTGRENVYLNGAILGMSRAEVRSKFDEIVEFAEIGEFIDTPVKRYSSGMYVRL
CCCCCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCEEEE
AFAVAAHLEPEILLVDEVLAVGDVNFQNKCMGRMQEVTKAGRTIIFVSHNMTAISSICPK
EEHHHHHCCCCEEEEEHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCH
SILMADGKVAAMGDTADVIKAYLDRPEFGGTASYSVNPEDVEGKAVICRVAVLNEKDEAS
HHEECCCCEEECCCHHHHHHHHHCCCCCCCEEECCCCCCCCCCCEEEEEEEEECCCCCCC
GTLELSKGFSVEVEYELREPLSGLSVGMQIMMEDGYTTLVSLSDPELDVGRLDTRPAGYY
CEEEECCCCEEEEEEHHHCCCCHHHHCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCEE
RARVKFPGYLLNTGTFYLRLGISSRFSIYSVAEGIRFDVEDNVGIIQMLGQQRKPSISAI
EEEEECCCEEEECCEEEEEECCCCCCCCEEHHCCCEEECCCCCHHHHHHCCCCCCCCEEE
QLPWEVEKLFLRDSEGVLK
ECCHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNDIVIRAEHVSKLYRLGVINHGTLYRDLQSWWAKWRNLPDPNVSVSDHTSDRGAQSRLK
CCCEEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH
GDIFHALDDVSFEVGQGEIVGIIGRNGAGKSTLLKVMSRITMPNSGFIGIRGRIASLLEV
HHHHHHHHCCEEECCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHH
GTGFHPELTGRENVYLNGAILGMSRAEVRSKFDEIVEFAEIGEFIDTPVKRYSSGMYVRL
CCCCCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCEEEE
AFAVAAHLEPEILLVDEVLAVGDVNFQNKCMGRMQEVTKAGRTIIFVSHNMTAISSICPK
EEHHHHHCCCCEEEEEHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCH
SILMADGKVAAMGDTADVIKAYLDRPEFGGTASYSVNPEDVEGKAVICRVAVLNEKDEAS
HHEECCCCEEECCCHHHHHHHHHCCCCCCCEEECCCCCCCCCCCEEEEEEEEECCCCCCC
GTLELSKGFSVEVEYELREPLSGLSVGMQIMMEDGYTTLVSLSDPELDVGRLDTRPAGYY
CEEEECCCCEEEEEEHHHCCCCHHHHCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCEE
RARVKFPGYLLNTGTFYLRLGISSRFSIYSVAEGIRFDVEDNVGIIQMLGQQRKPSISAI
EEEEECCCEEEECCEEEEEECCCCCCCCEEHHCCCEEECCCCCHHHHHHCCCCCCCCEEE
QLPWEVEKLFLRDSEGVLK
ECCHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8626291 [H]