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The map label for this gene is rbsR [H]

Identifier: 209547879

GI number: 209547879

Start: 275401

End: 276429

Strand: Reverse

Name: rbsR [H]

Synonym: Rleg2_0271

Alternate gene names: 209547879

Gene position: 276429-275401 (Counterclockwise)

Preceding gene: 209547882

Following gene: 209547867

Centisome position: 6.09

GC content: 62.88

Gene sequence:

>1029_bases
GTGACGACCAGCATCAGACATATCGCCAAACTTGCAGGAACGTCGGTCTCTTCGGTCTCGCGTGTGCTCAACAACAGCGG
CTACGCCTCGCCTGAGCTCCGGCACCGCGTCGAGGCGGCGATCCGGACATTGAACTACACACCCAGCAAGGGCGCCCGTA
TGCTGCGCGGTGCACCAAGCCGGATGATCGGGCTGATGCTGCCGTCGATTGACGTTCCGTTCTTCGGTATCCTTGCCCAT
GCCATCGAACAGGAACTGTTTCAGCACGGCTATCAGACGCTGATCTGCAGCACGGCGGAAAATATGGATCACGAGGCGCG
CTATATTTCCATGCTGCTTGCCCAGCGTGTCGATGGCGTCATCGTCGCAAGCGCCTTCGGCAGCATCGAGCATTTCGGGG
TGCTCCGGGATGCCGGTATTCCGATCATCGCCATCGACCGCGAGCTGAGCGGCATCGCCGACGACGCTGTGATGGCCGAT
CACGAAGAAGGCGGACGGCTTATGGCCCGCCATCTGATCGGCCTCGGCCACCGGGCGATCGCCATCGTCGGGGCGCCGGC
ACACAGCCAGCCGATCCAGCTCCGGCTCCAGGGCATCACGGCGGAAATGGCGAAAGACGGCATCACGCCTGCCGTCGTGG
CGATGGCGGAAGAGCACAGCTTTGCCGAGACCTACCGGCTGGCGCGCGAATTGCTGGCGTCTCGGCCCGAAATCACCGCG
ATCATCGGCACCACCGACGTTTCGGCGATTGCGGCGATCCATGCCGTTCAGGATCGCGGATTTTCCGTTCCGAACGATTA
TTCGGTCGTGGGCTTCGACGACCTGCCGGAGGCGGCCTACGTCTTCCCACGACTGACAACGGTCGCACAGCCGATCCGCA
ATGTCGGGCAGCAGGCAGCGCGGCTGCTGGAAACGCTGGTCGAGGACCAGCAAACAGGAGACGGATCTCGAGCGGCTGCG
ATTGTCAAAGTGCCGGTCACGCTGATTACGCGCGATTCCACCGGCCCCGTCCGCAGCACCATGCTCTAA

Upstream 100 bases:

>100_bases
GGAATCGATTTAGGGATAAGTTGTGCAGCATTCAAACTGCTGTGGCGTCCTTTATTCATGTGAAGACGCTCAGTGCTGCA
AAAGAGAGAAATGCCGACCT

Downstream 100 bases:

>100_bases
GGCCGGACGATGACCTTGATCTCGCCTGGCAATGGCGCGTTGACCACCACGTCGGCGACCTCTTCGAGACCGATGGTTCT
GGTGACCAATGCGTCCAGTT

Product: LacI family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 341

Protein sequence:

>342_residues
MTTSIRHIAKLAGTSVSSVSRVLNNSGYASPELRHRVEAAIRTLNYTPSKGARMLRGAPSRMIGLMLPSIDVPFFGILAH
AIEQELFQHGYQTLICSTAENMDHEARYISMLLAQRVDGVIVASAFGSIEHFGVLRDAGIPIIAIDRELSGIADDAVMAD
HEEGGRLMARHLIGLGHRAIAIVGAPAHSQPIQLRLQGITAEMAKDGITPAVVAMAEEHSFAETYRLARELLASRPEITA
IIGTTDVSAIAAIHAVQDRGFSVPNDYSVVGFDDLPEAAYVFPRLTTVAQPIRNVGQQAARLLETLVEDQQTGDGSRAAA
IVKVPVTLITRDSTGPVRSTML

Sequences:

>Translated_342_residues
MTTSIRHIAKLAGTSVSSVSRVLNNSGYASPELRHRVEAAIRTLNYTPSKGARMLRGAPSRMIGLMLPSIDVPFFGILAH
AIEQELFQHGYQTLICSTAENMDHEARYISMLLAQRVDGVIVASAFGSIEHFGVLRDAGIPIIAIDRELSGIADDAVMAD
HEEGGRLMARHLIGLGHRAIAIVGAPAHSQPIQLRLQGITAEMAKDGITPAVVAMAEEHSFAETYRLARELLASRPEITA
IIGTTDVSAIAAIHAVQDRGFSVPNDYSVVGFDDLPEAAYVFPRLTTVAQPIRNVGQQAARLLETLVEDQQTGDGSRAAA
IVKVPVTLITRDSTGPVRSTML
>Mature_341_residues
TTSIRHIAKLAGTSVSSVSRVLNNSGYASPELRHRVEAAIRTLNYTPSKGARMLRGAPSRMIGLMLPSIDVPFFGILAHA
IEQELFQHGYQTLICSTAENMDHEARYISMLLAQRVDGVIVASAFGSIEHFGVLRDAGIPIIAIDRELSGIADDAVMADH
EEGGRLMARHLIGLGHRAIAIVGAPAHSQPIQLRLQGITAEMAKDGITPAVVAMAEEHSFAETYRLARELLASRPEITAI
IGTTDVSAIAAIHAVQDRGFSVPNDYSVVGFDDLPEAAYVFPRLTTVAQPIRNVGQQAARLLETLVEDQQTGDGSRAAAI
VKVPVTLITRDSTGPVRSTML

Specific function: Transcriptional repressor for the ribose rbsDACBK operon [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787948, Length=340, Percent_Identity=30.2941176470588, Blast_Score=154, Evalue=6e-39,
Organism=Escherichia coli, GI1790194, Length=302, Percent_Identity=29.4701986754967, Blast_Score=150, Evalue=2e-37,
Organism=Escherichia coli, GI1789202, Length=298, Percent_Identity=32.5503355704698, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1788474, Length=302, Percent_Identity=31.1258278145695, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1790369, Length=336, Percent_Identity=28.5714285714286, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1786540, Length=339, Percent_Identity=29.7935103244838, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI48994940, Length=300, Percent_Identity=29.3333333333333, Blast_Score=128, Evalue=4e-31,
Organism=Escherichia coli, GI1789068, Length=303, Percent_Identity=29.7029702970297, Blast_Score=122, Evalue=5e-29,
Organism=Escherichia coli, GI1790715, Length=308, Percent_Identity=25.974025974026, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1787906, Length=323, Percent_Identity=29.1021671826625, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1787580, Length=319, Percent_Identity=26.9592476489028, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI1786268, Length=313, Percent_Identity=27.4760383386581, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1790689, Length=301, Percent_Identity=24.2524916943522, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1789456, Length=343, Percent_Identity=24.198250728863, Blast_Score=76, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 36714; Mature: 36582

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS50932 HTH_LACI_2 ; PS00435 PEROXIDASE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTSIRHIAKLAGTSVSSVSRVLNNSGYASPELRHRVEAAIRTLNYTPSKGARMLRGAPS
CCCHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHCCHH
RMIGLMLPSIDVPFFGILAHAIEQELFQHGYQTLICSTAENMDHEARYISMLLAQRVDGV
HHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHEEHHHHHCCCHHHHHHHHHHHHHHCCE
IVASAFGSIEHFGVLRDAGIPIIAIDRELSGIADDAVMADHEEGGRLMARHLIGLGHRAI
EEEHHHCCHHHHHHHHHCCCCEEEECCCCCCCCCHHHHCCCCCCHHHHHHHHHHCCCCEE
AIVGAPAHSQPIQLRLQGITAEMAKDGITPAVVAMAEEHSFAETYRLARELLASRPEITA
EEEECCCCCCCEEEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
IIGTTDVSAIAAIHAVQDRGFSVPNDYSVVGFDDLPEAAYVFPRLTTVAQPIRNVGQQAA
EEECCHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
RLLETLVEDQQTGDGSRAAAIVKVPVTLITRDSTGPVRSTML
HHHHHHHHHHCCCCCCCEEEEEEEEEEEEEECCCCCHHHCCC
>Mature Secondary Structure 
TTSIRHIAKLAGTSVSSVSRVLNNSGYASPELRHRVEAAIRTLNYTPSKGARMLRGAPS
CCHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHCCHH
RMIGLMLPSIDVPFFGILAHAIEQELFQHGYQTLICSTAENMDHEARYISMLLAQRVDGV
HHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHEEHHHHHCCCHHHHHHHHHHHHHHCCE
IVASAFGSIEHFGVLRDAGIPIIAIDRELSGIADDAVMADHEEGGRLMARHLIGLGHRAI
EEEHHHCCHHHHHHHHHCCCCEEEECCCCCCCCCHHHHCCCCCCHHHHHHHHHHCCCCEE
AIVGAPAHSQPIQLRLQGITAEMAKDGITPAVVAMAEEHSFAETYRLARELLASRPEITA
EEEECCCCCCCEEEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
IIGTTDVSAIAAIHAVQDRGFSVPNDYSVVGFDDLPEAAYVFPRLTTVAQPIRNVGQQAA
EEECCHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
RLLETLVEDQQTGDGSRAAAIVKVPVTLITRDSTGPVRSTML
HHHHHHHHHHCCCCCCCEEEEEEEEEEEEEECCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]