Click here to switch to the map view.

The map label for this gene is rmuC [H]

Identifier: 209696389

GI number: 209696389

Start: 3244906

End: 3246426

Strand: Direct

Name: rmuC [H]

Synonym: VSAL_I2995

Alternate gene names: 209696389

Gene position: 3244906-3246426 (Clockwise)

Preceding gene: 209696387

Following gene: 209696390

Centisome position: 97.59

GC content: 42.08

Gene sequence:

>1521_bases
ATGGATTTTTTGAATCAGTTTGGTGGGCATTTATTGTTTGGTTTTTCAGGAGCAGTGGTTGCTTACGCTGTCGCCTATAC
ATTAACGAAAAGCCGTAACGAACAAGCATTGGCATTATTAGAGCAATCATTAGAGTCAGAAAAAAAACTCGCGAGTACTC
AATTGAGTCAACTTAATCAACAGGTAGATAAGCAACAGGCAGAGCTTGATGAGCTAGACATTGAAAGAGATAAACTGGTT
CAAGAGCAAAAGCAATTTCATGGTCGTCTAATGGCTGCGATGGAAAAACTGCGTTACTTTGATGCCATTCAAAAAGAAAA
AGAATTTCTCACACAACAACTTGAGTTTTCTCGTCAAACGAATTCCAATATTGAAGCTGAATTGCGTGAACAAGAAGCGC
GACACGAAGAAGAGCGCAAAGCAAGCCAAGAAAAACTCGAGATACTAGAGCGTGCAGAGCTGCGTTTAAAGGAACAGTTC
GAGAATTTAGCCAACCAATTGTTTGAGCAGAAAACGAAAACCGTTGATGAGCAAAATAAAGTGAGTTTAGAGGGCTTGTT
GTCGCCATTAAAAGAACAGCTTGAAGGATTCAAAAGACAGGTTAACGACAGTTTTGGTCTTGAAGCCAAAGAGCGTCACA
CGTTAGTGCATGAAATTCGCAGCTTACAACAGCTTAATGAACGCATGACACAAGAAGCGGTAAACCTGACTAACGCCTTA
AAAGGTGACAACAAACAACAAGGTAATTGGGGTGAAGTTGTTCTTGGTCGAGTGTTAAAAGAATCGGGGTTACGTGAAGG
TCATGAGTACGATACCCAAGTCAGTATGGATGACGACGAGGGTAAGCGCTTTTATCCTGATGTGATTGTTCACTTACCTG
ACGAGAAAGATGTCGTGGTCGATTCCAAAATGACCTTGGTTGCCTACGAGCGATTTTTTAACAGCGATGACTTTAATCAA
AAAGAGCAGGCGCTTGATGAACACCTTATGGCCATTCGTGCTCATTTACGTGGTTTAAGCAAAAAGGATTACCACAAATT
AAATGGCTTACGCAGCTTGGATTATGTCTTGATGTTTATTCCAGTTGAGCCCGCTTTTCAGGTGGCGATTGAAGCCGATC
CTTCGTTAATCTCGGATGCGATGGAGCAGAACATTATCATTGTAAGCCCAACAACATTACTGGTTGCACTCAGAACCATC
AGTAACTTATGGCGCAATGAAAGACAGAATCAAAACGCGAAAATTATTGCTGAACGAGCCACGAAGCTGTACGACAAAAT
GCGATTGTTTGTGGATGACATGGAAGCGGTCGGCGGTGCATTAGATAAGGCAAATCAAAGCTACCAAGGCGCAATGAATA
AATTGGCAACAGGAAGAGGGAACATCATTCGCCAAGCGGAAAGCTTTAAAGAGCTTGGTGTAGAAGTAAAACGAGACATA
AATCGTCGTCTTATTGAGCAATCTTTTGAAGCCGATGCCATGCAAACGCTTGGTGATAGTGGGTCGGATAAAGTAGACTA
G

Upstream 100 bases:

>100_bases
TTAGATCCGGAGTTTACCTGCAGTGATGAAATAGTGTTAACTGGACATTTATCCAGTATCAAAATATCCTATAAAGATTC
GTTTTTGTATTGAGTAAATT

Downstream 100 bases:

>100_bases
AGCGCTGTTGATCCCACAGGATAAGAAGGGGTCAACATATTATCTCTAGAGGACTTAAAATGACGGACAAAACGCACTCT
ACCGAAGAGACCACACACTT

Product: DNA recombination protein RumC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 506; Mature: 506

Protein sequence:

>506_residues
MDFLNQFGGHLLFGFSGAVVAYAVAYTLTKSRNEQALALLEQSLESEKKLASTQLSQLNQQVDKQQAELDELDIERDKLV
QEQKQFHGRLMAAMEKLRYFDAIQKEKEFLTQQLEFSRQTNSNIEAELREQEARHEEERKASQEKLEILERAELRLKEQF
ENLANQLFEQKTKTVDEQNKVSLEGLLSPLKEQLEGFKRQVNDSFGLEAKERHTLVHEIRSLQQLNERMTQEAVNLTNAL
KGDNKQQGNWGEVVLGRVLKESGLREGHEYDTQVSMDDDEGKRFYPDVIVHLPDEKDVVVDSKMTLVAYERFFNSDDFNQ
KEQALDEHLMAIRAHLRGLSKKDYHKLNGLRSLDYVLMFIPVEPAFQVAIEADPSLISDAMEQNIIIVSPTTLLVALRTI
SNLWRNERQNQNAKIIAERATKLYDKMRLFVDDMEAVGGALDKANQSYQGAMNKLATGRGNIIRQAESFKELGVEVKRDI
NRRLIEQSFEADAMQTLGDSGSDKVD

Sequences:

>Translated_506_residues
MDFLNQFGGHLLFGFSGAVVAYAVAYTLTKSRNEQALALLEQSLESEKKLASTQLSQLNQQVDKQQAELDELDIERDKLV
QEQKQFHGRLMAAMEKLRYFDAIQKEKEFLTQQLEFSRQTNSNIEAELREQEARHEEERKASQEKLEILERAELRLKEQF
ENLANQLFEQKTKTVDEQNKVSLEGLLSPLKEQLEGFKRQVNDSFGLEAKERHTLVHEIRSLQQLNERMTQEAVNLTNAL
KGDNKQQGNWGEVVLGRVLKESGLREGHEYDTQVSMDDDEGKRFYPDVIVHLPDEKDVVVDSKMTLVAYERFFNSDDFNQ
KEQALDEHLMAIRAHLRGLSKKDYHKLNGLRSLDYVLMFIPVEPAFQVAIEADPSLISDAMEQNIIIVSPTTLLVALRTI
SNLWRNERQNQNAKIIAERATKLYDKMRLFVDDMEAVGGALDKANQSYQGAMNKLATGRGNIIRQAESFKELGVEVKRDI
NRRLIEQSFEADAMQTLGDSGSDKVD
>Mature_506_residues
MDFLNQFGGHLLFGFSGAVVAYAVAYTLTKSRNEQALALLEQSLESEKKLASTQLSQLNQQVDKQQAELDELDIERDKLV
QEQKQFHGRLMAAMEKLRYFDAIQKEKEFLTQQLEFSRQTNSNIEAELREQEARHEEERKASQEKLEILERAELRLKEQF
ENLANQLFEQKTKTVDEQNKVSLEGLLSPLKEQLEGFKRQVNDSFGLEAKERHTLVHEIRSLQQLNERMTQEAVNLTNAL
KGDNKQQGNWGEVVLGRVLKESGLREGHEYDTQVSMDDDEGKRFYPDVIVHLPDEKDVVVDSKMTLVAYERFFNSDDFNQ
KEQALDEHLMAIRAHLRGLSKKDYHKLNGLRSLDYVLMFIPVEPAFQVAIEADPSLISDAMEQNIIIVSPTTLLVALRTI
SNLWRNERQNQNAKIIAERATKLYDKMRLFVDDMEAVGGALDKANQSYQGAMNKLATGRGNIIRQAESFKELGVEVKRDI
NRRLIEQSFEADAMQTLGDSGSDKVD

Specific function: Involved in DNA recombination [H]

COG id: COG1322

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rmuC family [H]

Homologues:

Organism=Escherichia coli, GI1790266, Length=418, Percent_Identity=57.6555023923445, Blast_Score=492, Evalue=1e-140,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003798 [H]

Pfam domain/function: PF02646 RmuC [H]

EC number: NA

Molecular weight: Translated: 58042; Mature: 58042

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MDFLNQFGGHLLFGFSGAVVAYAVAYTLTKSRNEQALALLEQSLESEKKLASTQLSQLNQ
CCCHHHHCCCEEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
QVDKQQAELDELDIERDKLVQEQKQFHGRLMAAMEKLRYFDAIQKEKEFLTQQLEFSRQT
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NSNIEAELREQEARHEEERKASQEKLEILERAELRLKEQFENLANQLFEQKTKTVDEQNK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
VSLEGLLSPLKEQLEGFKRQVNDSFGLEAKERHTLVHEIRSLQQLNERMTQEAVNLTNAL
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KGDNKQQGNWGEVVLGRVLKESGLREGHEYDTQVSMDDDEGKRFYPDVIVHLPDEKDVVV
CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCEECCHHEEECCCCCCEEE
DSKMTLVAYERFFNSDDFNQKEQALDEHLMAIRAHLRGLSKKDYHKLNGLRSLDYVLMFI
CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHEEEEE
PVEPAFQVAIEADPSLISDAMEQNIIIVSPTTLLVALRTISNLWRNERQNQNAKIIAERA
ECCHHHEEEECCCHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
TKLYDKMRLFVDDMEAVGGALDKANQSYQGAMNKLATGRGNIIRQAESFKELGVEVKRDI
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHHHHH
NRRLIEQSFEADAMQTLGDSGSDKVD
HHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]