Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209696387

Identifier: 209696387

GI number: 209696387

Start: 3243512

End: 3243796

Strand: Direct

Name: 209696387

Synonym: VSAL_I2993

Alternate gene names: NA

Gene position: 3243512-3243796 (Clockwise)

Preceding gene: 209696386

Following gene: 209696389

Centisome position: 97.54

GC content: 40.35

Gene sequence:

>285_bases
ATGTCGATGTCTATTATTGAAATGGCTCGTGTCTTAGAGCAGATGGAAGAGTCACCAGAGAAATTAATGTTTGGTAAACT
TCTTTCTGAATTAGGAAACCAAAGCCAAGAGCGCGTAAGAAGTGCTGCGCGACAAGTGTCTGTTCCTACATTGCGTGATC
TGATTTACCAATTCCAAGTGGTAATTGAAGAACGCAAAGGTGAGACAACAAAAAAACTTGCAGAAGAAATGGCAAAAGAA
GGGGTCTCTTTAGCAGATTTCCAAGCGTATTTAGCAAGCAAGTAA

Upstream 100 bases:

>100_bases
AACAGCAACATTGCTTTTTTAATAGATCGAGATAAGATGGTTTTAGTGTATATTCACCCCTTATCTCGTTTTAATCGTTA
ATTAAAAGGCAAAACACGCA

Downstream 100 bases:

>100_bases
AGGTTATAAATAAAAAAAACAGCGAACTCCGCTGTTTTTTTTATCGCTAAATCACCTATTGATGGTTTTATTATTTAATC
TGGGCGGCCGATGTAGGTTC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 94; Mature: 93

Protein sequence:

>94_residues
MSMSIIEMARVLEQMEESPEKLMFGKLLSELGNQSQERVRSAARQVSVPTLRDLIYQFQVVIEERKGETTKKLAEEMAKE
GVSLADFQAYLASK

Sequences:

>Translated_94_residues
MSMSIIEMARVLEQMEESPEKLMFGKLLSELGNQSQERVRSAARQVSVPTLRDLIYQFQVVIEERKGETTKKLAEEMAKE
GVSLADFQAYLASK
>Mature_93_residues
SMSIIEMARVLEQMEESPEKLMFGKLLSELGNQSQERVRSAARQVSVPTLRDLIYQFQVVIEERKGETTKKLAEEMAKEG
VSLADFQAYLASK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10684; Mature: 10552

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.4 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMSIIEMARVLEQMEESPEKLMFGKLLSELGNQSQERVRSAARQVSVPTLRDLIYQFQV
CCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHH
VIEERKGETTKKLAEEMAKEGVSLADFQAYLASK
HHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHCC
>Mature Secondary Structure 
SMSIIEMARVLEQMEESPEKLMFGKLLSELGNQSQERVRSAARQVSVPTLRDLIYQFQV
CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHH
VIEERKGETTKKLAEEMAKEGVSLADFQAYLASK
HHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA