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The map label for this gene is yidZ [H]

Identifier: 209696385

GI number: 209696385

Start: 3241116

End: 3242081

Strand: Reverse

Name: yidZ [H]

Synonym: VSAL_I2991

Alternate gene names: 209696385

Gene position: 3242081-3241116 (Counterclockwise)

Preceding gene: 209696388

Following gene: 209696384

Centisome position: 97.5

GC content: 40.89

Gene sequence:

>966_bases
ATGTTCTTCGAAAAGTTAGCGAGAATCGACCTCAATTTACTTTTAACTCTTCACCTCTTATTGGAAGAGAAAAGTGTTAC
TCGTGCCTCTCAACGATTGTGTTTAAGTCAATCGGCCGTCAGTAAAAACTTAGCTAAATTACGAGAACAATTTGATGATC
CCCTTTTTACTCGTACCGCTTACGGGCTTCAGCCCACAGCAAAAGCAAGAAACCTCCATGGACAGCTTCATGTTTTATTA
AGCCACTTAGAAAGTATTACTGAAGCGTCTGAGTTTGACCCTCAATGCAGCCACTATCGTTTTCGGGTTGGTTTAGTGGA
AAGTACCTATCCATTACTATTACCTCGTTTCATGTCCTACATATTAAATGAAGCGCCCAATGTTATGCTCGATACCCATG
CATGGGATAAAAACACCTTAAAAAAATTGCAATCAGGTGAAATGGACATTGGTATTACCGGTAAAGATTTAGACCCGAAA
TACGCAAACATTACGATGCAAATGCCATCAGATGTTCGAGGACAAGAAATCTATCGAGATAATCAAATGTGTTTGGTACG
TCCTGGTCACCCTGTATTAGATCAAGAATGGAATTTAGACACCTATCTAAAACAACGTCATGTTCAAGTGCGGTGCGATG
GCAAAGACCAATGGTTGCTTGATTATAAACTTGCTGATCGCGGCCTTGAACGCAGCATCAGTATTATCGTTCCTGACTTT
AATAGCGCAGCAAGTCTATGCACTCATACAGACTTAGTGTTCACCGCCCCAAGTCACTTTATTAAACTCATCGCAAAACA
ACTTAATCTTGTTGTATTGCCCCTGCCCACAGAGCTACCCCAGATGGCCTATACACTGTTTTGGCATCAACAAAAAGACA
ATGATGCTGCCAATTGCTGGCTACGCAATACCATAATTAATCACTGCCAAGATTTATCAGCATCAACAATTGCAGACCAC
GAATAA

Upstream 100 bases:

>100_bases
CGTGTTAACTCCTAATGTTTGAATCGGGAGTGTACTCAATTAGAGATATGAACAGAAATGGTTTATATTCAGATCTAACA
TTCTAATTTGGAATATCTCT

Downstream 100 bases:

>100_bases
AAGCACTAGGTTATAACCAAATAAAATCGATATTTTCTGCCTCTCCACATACGGACAGATCAATAATAAGGACACTTCAG
ATGCACCTACACACTTCTCA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MFFEKLARIDLNLLLTLHLLLEEKSVTRASQRLCLSQSAVSKNLAKLREQFDDPLFTRTAYGLQPTAKARNLHGQLHVLL
SHLESITEASEFDPQCSHYRFRVGLVESTYPLLLPRFMSYILNEAPNVMLDTHAWDKNTLKKLQSGEMDIGITGKDLDPK
YANITMQMPSDVRGQEIYRDNQMCLVRPGHPVLDQEWNLDTYLKQRHVQVRCDGKDQWLLDYKLADRGLERSISIIVPDF
NSAASLCTHTDLVFTAPSHFIKLIAKQLNLVVLPLPTELPQMAYTLFWHQQKDNDAANCWLRNTIINHCQDLSASTIADH
E

Sequences:

>Translated_321_residues
MFFEKLARIDLNLLLTLHLLLEEKSVTRASQRLCLSQSAVSKNLAKLREQFDDPLFTRTAYGLQPTAKARNLHGQLHVLL
SHLESITEASEFDPQCSHYRFRVGLVESTYPLLLPRFMSYILNEAPNVMLDTHAWDKNTLKKLQSGEMDIGITGKDLDPK
YANITMQMPSDVRGQEIYRDNQMCLVRPGHPVLDQEWNLDTYLKQRHVQVRCDGKDQWLLDYKLADRGLERSISIIVPDF
NSAASLCTHTDLVFTAPSHFIKLIAKQLNLVVLPLPTELPQMAYTLFWHQQKDNDAANCWLRNTIINHCQDLSASTIADH
E
>Mature_321_residues
MFFEKLARIDLNLLLTLHLLLEEKSVTRASQRLCLSQSAVSKNLAKLREQFDDPLFTRTAYGLQPTAKARNLHGQLHVLL
SHLESITEASEFDPQCSHYRFRVGLVESTYPLLLPRFMSYILNEAPNVMLDTHAWDKNTLKKLQSGEMDIGITGKDLDPK
YANITMQMPSDVRGQEIYRDNQMCLVRPGHPVLDQEWNLDTYLKQRHVQVRCDGKDQWLLDYKLADRGLERSISIIVPDF
NSAASLCTHTDLVFTAPSHFIKLIAKQLNLVVLPLPTELPQMAYTLFWHQQKDNDAANCWLRNTIINHCQDLSASTIADH
E

Specific function: Involved in anaerobic NO protection [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790147, Length=297, Percent_Identity=30.6397306397306, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI87081684, Length=312, Percent_Identity=25.9615384615385, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI87081766, Length=279, Percent_Identity=26.8817204301075, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI1786820, Length=79, Percent_Identity=41.7721518987342, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36826; Mature: 36826

Theoretical pI: Translated: 6.70; Mature: 6.70

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFFEKLARIDLNLLLTLHLLLEEKSVTRASQRLCLSQSAVSKNLAKLREQFDDPLFTRTA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
YGLQPTAKARNLHGQLHVLLSHLESITEASEFDPQCSHYRFRVGLVESTYPLLLPRFMSY
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHH
ILNEAPNVMLDTHAWDKNTLKKLQSGEMDIGITGKDLDPKYANITMQMPSDVRGQEIYRD
HHCCCCCEEEECCCCCHHHHHHHHCCCEEEEECCCCCCCCEEEEEEECCCCCCCHHHCCC
NQMCLVRPGHPVLDQEWNLDTYLKQRHVQVRCDGKDQWLLDYKLADRGLERSISIIVPDF
CCEEEEECCCCCCCCCCCHHHHHHHCCEEEEECCCCCEEEEHHHHHCCCCCEEEEEEECC
NSAASLCTHTDLVFTAPSHFIKLIAKQLNLVVLPLPTELPQMAYTLFWHQQKDNDAANCW
CCHHHHHHHCCEEEECHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHEECCCCCCHHHHH
LRNTIINHCQDLSASTIADHE
HHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MFFEKLARIDLNLLLTLHLLLEEKSVTRASQRLCLSQSAVSKNLAKLREQFDDPLFTRTA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
YGLQPTAKARNLHGQLHVLLSHLESITEASEFDPQCSHYRFRVGLVESTYPLLLPRFMSY
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHH
ILNEAPNVMLDTHAWDKNTLKKLQSGEMDIGITGKDLDPKYANITMQMPSDVRGQEIYRD
HHCCCCCEEEECCCCCHHHHHHHHCCCEEEEECCCCCCCCEEEEEEECCCCCCCHHHCCC
NQMCLVRPGHPVLDQEWNLDTYLKQRHVQVRCDGKDQWLLDYKLADRGLERSISIIVPDF
CCEEEEECCCCCCCCCCCHHHHHHHCCEEEEECCCCCEEEEHHHHHCCCCCEEEEEEECC
NSAASLCTHTDLVFTAPSHFIKLIAKQLNLVVLPLPTELPQMAYTLFWHQQKDNDAANCW
CCHHHHHHHCCEEEECHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHEECCCCCCHHHHH
LRNTIINHCQDLSASTIADHE
HHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA