| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209696388
Identifier: 209696388
GI number: 209696388
Start: 3243867
End: 3244778
Strand: Reverse
Name: 209696388
Synonym: VSAL_I2994
Alternate gene names: NA
Gene position: 3244778-3243867 (Counterclockwise)
Preceding gene: 209696397
Following gene: 209696385
Centisome position: 97.58
GC content: 41.12
Gene sequence:
>912_bases ATGAATGAACGCCGTGCATTAGGATTTGGGATCGCAGCCGTCCTCTTATGGTCGACTGTCGCGACCGCATTTAAAATCAC CCTAGAACACTTTACTCCCATCCAAATGCTGACGATTGCCTGTGCAGTTTCAATTTTAGCGTTAGTGGGGGTTGCCGCTT ATCAAAAAACCTTATCACAACTAACAAGTACCTTTTTTGCCAACCCTTTGTATTACATTTTATTAGGTGCTATTAACCCA TTGGCGTATTACTTGGTTTTATTTAAGTCTTACGATCTATTACCAGCCTCTCAAGCACAACCAATCAACTACAGCTGGGC AATCACATTAACATTAATGGCCGCTGTATTTCTTGGTCAAAAAATCCGAAAACAAGATTGGATTGCCTGTGTGCTTGGGT ATGTTGGTGTCATTATTATTGCAACCAAAGGGGACGTTCTAGGTTTAGAGTTTGACAGTCCATTAGGCGTTGGTCTCGCG TTATTTTCAACATTATTATGGGCAAGCTATTGGATTTTAAATGCGAAAAATAAAGCAGATCCTATTTTAGGATTATTACT GGGGTTCTTAGTTGCCTTACCCGTTGCGGTCGGTTTAAGCATTTATGAAGGTGCCCCTTGGGAGCAAATCCCAATGAGTG GCTGGTTGGCTGTGTCTTATGTGGGTCTATTTGAGATGGGCATTACGTTTGTATTGTGGTTATCTGCATTACGACTCACA CAGAATACCGCTCGCATTAGTAACCTAATCTTTGCTTCTCCTTTTATCTCTTTATTACTCTTGGCTAATATCATTGGTGA AGAGATCCACCCGTCCACATTAATCGGTTTGGTTATGATAGTTTGTGGCTTGGTTGTTCAGCAATTTTATGGCAAGAAAA AAGAACCTACATCGGCCGCCCAGATTAAATAA
Upstream 100 bases:
>100_bases TATAGGATATTTTGATACTGGATAAATGTCCAGTTAACACTATTTCATCACTGCAGGTAAACTCCGGATCTAAATGGATT TCTAATAGAGAAGAATAACA
Downstream 100 bases:
>100_bases TAAAACCATCAATAGGTGATTTAGCGATAAAAAAAACAGCGGAGTTCGCTGTTTTTTTTATTTATAACCTTTACTTGCTT GCTAAATACGCTTGGAAATC
Product: integral membrane protein
Products: NA
Alternate protein names: Integral Membrane Domain-Containing Protein; Transporter Drug/Metabolite Exporter Family; DMT Family Permease; Drug/Metabolite Exporter Family Protein; DMT Superfamily Permease; Drug/Metabolite Transporter Superfamily Permease; Drug/Metabolite Transporter Permease; Permease DMT Superfamily; Permease Outative
Number of amino acids: Translated: 303; Mature: 303
Protein sequence:
>303_residues MNERRALGFGIAAVLLWSTVATAFKITLEHFTPIQMLTIACAVSILALVGVAAYQKTLSQLTSTFFANPLYYILLGAINP LAYYLVLFKSYDLLPASQAQPINYSWAITLTLMAAVFLGQKIRKQDWIACVLGYVGVIIIATKGDVLGLEFDSPLGVGLA LFSTLLWASYWILNAKNKADPILGLLLGFLVALPVAVGLSIYEGAPWEQIPMSGWLAVSYVGLFEMGITFVLWLSALRLT QNTARISNLIFASPFISLLLLANIIGEEIHPSTLIGLVMIVCGLVVQQFYGKKKEPTSAAQIK
Sequences:
>Translated_303_residues MNERRALGFGIAAVLLWSTVATAFKITLEHFTPIQMLTIACAVSILALVGVAAYQKTLSQLTSTFFANPLYYILLGAINP LAYYLVLFKSYDLLPASQAQPINYSWAITLTLMAAVFLGQKIRKQDWIACVLGYVGVIIIATKGDVLGLEFDSPLGVGLA LFSTLLWASYWILNAKNKADPILGLLLGFLVALPVAVGLSIYEGAPWEQIPMSGWLAVSYVGLFEMGITFVLWLSALRLT QNTARISNLIFASPFISLLLLANIIGEEIHPSTLIGLVMIVCGLVVQQFYGKKKEPTSAAQIK >Mature_303_residues MNERRALGFGIAAVLLWSTVATAFKITLEHFTPIQMLTIACAVSILALVGVAAYQKTLSQLTSTFFANPLYYILLGAINP LAYYLVLFKSYDLLPASQAQPINYSWAITLTLMAAVFLGQKIRKQDWIACVLGYVGVIIIATKGDVLGLEFDSPLGVGLA LFSTLLWASYWILNAKNKADPILGLLLGFLVALPVAVGLSIYEGAPWEQIPMSGWLAVSYVGLFEMGITFVLWLSALRLT QNTARISNLIFASPFISLLLLANIIGEEIHPSTLIGLVMIVCGLVVQQFYGKKKEPTSAAQIK
Specific function: Unknown
COG id: COG0697
COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32981; Mature: 32981
Theoretical pI: Translated: 8.72; Mature: 8.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNERRALGFGIAAVLLWSTVATAFKITLEHFTPIQMLTIACAVSILALVGVAAYQKTLSQ CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH LTSTFFANPLYYILLGAINPLAYYLVLFKSYDLLPASQAQPINYSWAITLTLMAAVFLGQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH KIRKQDWIACVLGYVGVIIIATKGDVLGLEFDSPLGVGLALFSTLLWASYWILNAKNKAD HHHHHHHHHHHHHHHHEEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCC PILGLLLGFLVALPVAVGLSIYEGAPWEQIPMSGWLAVSYVGLFEMGITFVLWLSALRLT HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH QNTARISNLIFASPFISLLLLANIIGEEIHPSTLIGLVMIVCGLVVQQFYGKKKEPTSAA HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC QIK CCC >Mature Secondary Structure MNERRALGFGIAAVLLWSTVATAFKITLEHFTPIQMLTIACAVSILALVGVAAYQKTLSQ CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH LTSTFFANPLYYILLGAINPLAYYLVLFKSYDLLPASQAQPINYSWAITLTLMAAVFLGQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH KIRKQDWIACVLGYVGVIIIATKGDVLGLEFDSPLGVGLALFSTLLWASYWILNAKNKAD HHHHHHHHHHHHHHHHEEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCC PILGLLLGFLVALPVAVGLSIYEGAPWEQIPMSGWLAVSYVGLFEMGITFVLWLSALRLT HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH QNTARISNLIFASPFISLLLLANIIGEEIHPSTLIGLVMIVCGLVVQQFYGKKKEPTSAA HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC QIK CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA