Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

Click here to switch to the map view.

The map label for this gene is 209696388

Identifier: 209696388

GI number: 209696388

Start: 3243867

End: 3244778

Strand: Reverse

Name: 209696388

Synonym: VSAL_I2994

Alternate gene names: NA

Gene position: 3244778-3243867 (Counterclockwise)

Preceding gene: 209696397

Following gene: 209696385

Centisome position: 97.58

GC content: 41.12

Gene sequence:

>912_bases
ATGAATGAACGCCGTGCATTAGGATTTGGGATCGCAGCCGTCCTCTTATGGTCGACTGTCGCGACCGCATTTAAAATCAC
CCTAGAACACTTTACTCCCATCCAAATGCTGACGATTGCCTGTGCAGTTTCAATTTTAGCGTTAGTGGGGGTTGCCGCTT
ATCAAAAAACCTTATCACAACTAACAAGTACCTTTTTTGCCAACCCTTTGTATTACATTTTATTAGGTGCTATTAACCCA
TTGGCGTATTACTTGGTTTTATTTAAGTCTTACGATCTATTACCAGCCTCTCAAGCACAACCAATCAACTACAGCTGGGC
AATCACATTAACATTAATGGCCGCTGTATTTCTTGGTCAAAAAATCCGAAAACAAGATTGGATTGCCTGTGTGCTTGGGT
ATGTTGGTGTCATTATTATTGCAACCAAAGGGGACGTTCTAGGTTTAGAGTTTGACAGTCCATTAGGCGTTGGTCTCGCG
TTATTTTCAACATTATTATGGGCAAGCTATTGGATTTTAAATGCGAAAAATAAAGCAGATCCTATTTTAGGATTATTACT
GGGGTTCTTAGTTGCCTTACCCGTTGCGGTCGGTTTAAGCATTTATGAAGGTGCCCCTTGGGAGCAAATCCCAATGAGTG
GCTGGTTGGCTGTGTCTTATGTGGGTCTATTTGAGATGGGCATTACGTTTGTATTGTGGTTATCTGCATTACGACTCACA
CAGAATACCGCTCGCATTAGTAACCTAATCTTTGCTTCTCCTTTTATCTCTTTATTACTCTTGGCTAATATCATTGGTGA
AGAGATCCACCCGTCCACATTAATCGGTTTGGTTATGATAGTTTGTGGCTTGGTTGTTCAGCAATTTTATGGCAAGAAAA
AAGAACCTACATCGGCCGCCCAGATTAAATAA

Upstream 100 bases:

>100_bases
TATAGGATATTTTGATACTGGATAAATGTCCAGTTAACACTATTTCATCACTGCAGGTAAACTCCGGATCTAAATGGATT
TCTAATAGAGAAGAATAACA

Downstream 100 bases:

>100_bases
TAAAACCATCAATAGGTGATTTAGCGATAAAAAAAACAGCGGAGTTCGCTGTTTTTTTTATTTATAACCTTTACTTGCTT
GCTAAATACGCTTGGAAATC

Product: integral membrane protein

Products: NA

Alternate protein names: Integral Membrane Domain-Containing Protein; Transporter Drug/Metabolite Exporter Family; DMT Family Permease; Drug/Metabolite Exporter Family Protein; DMT Superfamily Permease; Drug/Metabolite Transporter Superfamily Permease; Drug/Metabolite Transporter Permease; Permease DMT Superfamily; Permease Outative

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MNERRALGFGIAAVLLWSTVATAFKITLEHFTPIQMLTIACAVSILALVGVAAYQKTLSQLTSTFFANPLYYILLGAINP
LAYYLVLFKSYDLLPASQAQPINYSWAITLTLMAAVFLGQKIRKQDWIACVLGYVGVIIIATKGDVLGLEFDSPLGVGLA
LFSTLLWASYWILNAKNKADPILGLLLGFLVALPVAVGLSIYEGAPWEQIPMSGWLAVSYVGLFEMGITFVLWLSALRLT
QNTARISNLIFASPFISLLLLANIIGEEIHPSTLIGLVMIVCGLVVQQFYGKKKEPTSAAQIK

Sequences:

>Translated_303_residues
MNERRALGFGIAAVLLWSTVATAFKITLEHFTPIQMLTIACAVSILALVGVAAYQKTLSQLTSTFFANPLYYILLGAINP
LAYYLVLFKSYDLLPASQAQPINYSWAITLTLMAAVFLGQKIRKQDWIACVLGYVGVIIIATKGDVLGLEFDSPLGVGLA
LFSTLLWASYWILNAKNKADPILGLLLGFLVALPVAVGLSIYEGAPWEQIPMSGWLAVSYVGLFEMGITFVLWLSALRLT
QNTARISNLIFASPFISLLLLANIIGEEIHPSTLIGLVMIVCGLVVQQFYGKKKEPTSAAQIK
>Mature_303_residues
MNERRALGFGIAAVLLWSTVATAFKITLEHFTPIQMLTIACAVSILALVGVAAYQKTLSQLTSTFFANPLYYILLGAINP
LAYYLVLFKSYDLLPASQAQPINYSWAITLTLMAAVFLGQKIRKQDWIACVLGYVGVIIIATKGDVLGLEFDSPLGVGLA
LFSTLLWASYWILNAKNKADPILGLLLGFLVALPVAVGLSIYEGAPWEQIPMSGWLAVSYVGLFEMGITFVLWLSALRLT
QNTARISNLIFASPFISLLLLANIIGEEIHPSTLIGLVMIVCGLVVQQFYGKKKEPTSAAQIK

Specific function: Unknown

COG id: COG0697

COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32981; Mature: 32981

Theoretical pI: Translated: 8.72; Mature: 8.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNERRALGFGIAAVLLWSTVATAFKITLEHFTPIQMLTIACAVSILALVGVAAYQKTLSQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTSTFFANPLYYILLGAINPLAYYLVLFKSYDLLPASQAQPINYSWAITLTLMAAVFLGQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
KIRKQDWIACVLGYVGVIIIATKGDVLGLEFDSPLGVGLALFSTLLWASYWILNAKNKAD
HHHHHHHHHHHHHHHHEEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
PILGLLLGFLVALPVAVGLSIYEGAPWEQIPMSGWLAVSYVGLFEMGITFVLWLSALRLT
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
QNTARISNLIFASPFISLLLLANIIGEEIHPSTLIGLVMIVCGLVVQQFYGKKKEPTSAA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
QIK
CCC
>Mature Secondary Structure
MNERRALGFGIAAVLLWSTVATAFKITLEHFTPIQMLTIACAVSILALVGVAAYQKTLSQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTSTFFANPLYYILLGAINPLAYYLVLFKSYDLLPASQAQPINYSWAITLTLMAAVFLGQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
KIRKQDWIACVLGYVGVIIIATKGDVLGLEFDSPLGVGLALFSTLLWASYWILNAKNKAD
HHHHHHHHHHHHHHHHEEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
PILGLLLGFLVALPVAVGLSIYEGAPWEQIPMSGWLAVSYVGLFEMGITFVLWLSALRLT
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
QNTARISNLIFASPFISLLLLANIIGEEIHPSTLIGLVMIVCGLVVQQFYGKKKEPTSAA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
QIK
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA