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The map label for this gene is psd

Identifier: 209696191

GI number: 209696191

Start: 3017678

End: 3018541

Strand: Direct

Name: psd

Synonym: VSAL_I2785

Alternate gene names: 209696191

Gene position: 3017678-3018541 (Clockwise)

Preceding gene: 209696190

Following gene: 209696192

Centisome position: 90.75

GC content: 40.62

Gene sequence:

>864_bases
GTGTCAGATAATTTAAAAATCGGGTTACAATATTTAACTCCAAAACATGCACTTACTCGTTTGGCTGGCAAATTAGCATC
AGCAAAAATGGGCTGGTTAACCACTGCGGTAATTAAGTGGTTCATTAAACAATACAACGTTGAAATGAGTGAAGCTAAAA
ACCCGGATCCTGAAGCATATTCTACATTCAATAACTTTTTTGTTCGTGAATTAGAAGATGGCGCACGCCCAATTAATGAC
GATGAGAATGTTATCTCTCACCCTGCAGATGCTTGCGTAAGTCAATTTGGCCCAATTACCGATGGTCAATTAGTTCAAGC
AAAAGGTCACGTTTACTCAGCTCAAGAGTTACTGGGTGGCGACGCTGAATTAGCGGAAGAATTTATAGGTGGCGAATTCG
CAACTCTGTATTTATCTCCGCGCGATTATCATCGTGTTCACATGCCATGCGATGCGACATTACGCAAAATGGTTTATGTT
CCTGGCGATTTATTCTCAGTGAATCCATTAACAGCAGAAAACGTTCCTAATTTATTTGCTCGTAATGAACGTGTTGTCTG
TATTTTTGATACTGAATTTGGTCCGATGGCGCAAGTCTTAGTCGGTGCAACTATCGTTGGTAGTATTGAAACGACATGGG
CAGATACGGTTACACCACCGACTGGCCCCGCAGTTAAAACATGGCACTACCCACTTTCTGGCGATGATGTAATTTGCTTT
AAGAAAGGTGAGGAAATGGGTCGCTTTAAATTAGGCTCTACGGTTATTAACTTATTTGCTCCTAATTCAATTACCTTTGA
TGAATCAATGAAAAATGGCGTCCCAACTCGTTTAGGTACTCCATTTGCTCACATTGCAAAATAA

Upstream 100 bases:

>100_bases
AAAGCGAACCGTCAATTTTCTCGTAGCAGAAAAGCCGATTAATAAACTAAGTAAAGATGTGGTAACATTTACCTTAATTG
ATAACTAGTAGGCAAACAAC

Downstream 100 bases:

>100_bases
TCAGTTTCTGTAAAATAAACAGTAAATAGCGAACCTTGTGTTCGCTATTTTTTTATCTATTCATCTCCCTTCCTAGTAAC
CTCTCTCATGGCAATATATG

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 286

Protein sequence:

>287_residues
MSDNLKIGLQYLTPKHALTRLAGKLASAKMGWLTTAVIKWFIKQYNVEMSEAKNPDPEAYSTFNNFFVRELEDGARPIND
DENVISHPADACVSQFGPITDGQLVQAKGHVYSAQELLGGDAELAEEFIGGEFATLYLSPRDYHRVHMPCDATLRKMVYV
PGDLFSVNPLTAENVPNLFARNERVVCIFDTEFGPMAQVLVGATIVGSIETTWADTVTPPTGPAVKTWHYPLSGDDVICF
KKGEEMGRFKLGSTVINLFAPNSITFDESMKNGVPTRLGTPFAHIAK

Sequences:

>Translated_287_residues
MSDNLKIGLQYLTPKHALTRLAGKLASAKMGWLTTAVIKWFIKQYNVEMSEAKNPDPEAYSTFNNFFVRELEDGARPIND
DENVISHPADACVSQFGPITDGQLVQAKGHVYSAQELLGGDAELAEEFIGGEFATLYLSPRDYHRVHMPCDATLRKMVYV
PGDLFSVNPLTAENVPNLFARNERVVCIFDTEFGPMAQVLVGATIVGSIETTWADTVTPPTGPAVKTWHYPLSGDDVICF
KKGEEMGRFKLGSTVINLFAPNSITFDESMKNGVPTRLGTPFAHIAK
>Mature_286_residues
SDNLKIGLQYLTPKHALTRLAGKLASAKMGWLTTAVIKWFIKQYNVEMSEAKNPDPEAYSTFNNFFVRELEDGARPINDD
ENVISHPADACVSQFGPITDGQLVQAKGHVYSAQELLGGDAELAEEFIGGEFATLYLSPRDYHRVHMPCDATLRKMVYVP
GDLFSVNPLTAENVPNLFARNERVVCIFDTEFGPMAQVLVGATIVGSIETTWADTVTPPTGPAVKTWHYPLSGDDVICFK
KGEEMGRFKLGSTVINLFAPNSITFDESMKNGVPTRLGTPFAHIAK

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 1 subfamily

Homologues:

Organism=Homo sapiens, GI13489112, Length=300, Percent_Identity=31.6666666666667, Blast_Score=125, Evalue=3e-29,
Organism=Escherichia coli, GI1790604, Length=284, Percent_Identity=58.8028169014084, Blast_Score=350, Evalue=5e-98,
Organism=Caenorhabditis elegans, GI71980843, Length=287, Percent_Identity=32.7526132404181, Blast_Score=125, Evalue=3e-29,
Organism=Caenorhabditis elegans, GI71980840, Length=287, Percent_Identity=32.7526132404181, Blast_Score=124, Evalue=4e-29,
Organism=Saccharomyces cerevisiae, GI6321609, Length=292, Percent_Identity=28.4246575342466, Blast_Score=115, Evalue=5e-27,
Organism=Saccharomyces cerevisiae, GI6324160, Length=165, Percent_Identity=36.3636363636364, Blast_Score=91, Evalue=3e-19,
Organism=Drosophila melanogaster, GI24649526, Length=305, Percent_Identity=30.8196721311475, Blast_Score=122, Evalue=4e-28,
Organism=Drosophila melanogaster, GI24649528, Length=305, Percent_Identity=30.8196721311475, Blast_Score=122, Evalue=4e-28,
Organism=Drosophila melanogaster, GI24649524, Length=305, Percent_Identity=30.8196721311475, Blast_Score=122, Evalue=4e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_ALISL (B6EMR5)

Other databases:

- EMBL:   FM178379
- RefSeq:   YP_002264121.1
- GeneID:   6987916
- GenomeReviews:   FM178379_GR
- KEGG:   vsa:VSAL_I2785
- HOGENOM:   HBG302256
- OMA:   YFDQDLH
- ProtClustDB:   PRK00044
- HAMAP:   MF_00662
- InterPro:   IPR003817
- InterPro:   IPR005221
- PANTHER:   PTHR10067
- TIGRFAMs:   TIGR00163

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 31577; Mature: 31446

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDNLKIGLQYLTPKHALTRLAGKLASAKMGWLTTAVIKWFIKQYNVEMSEAKNPDPEAY
CCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHH
STFNNFFVRELEDGARPINDDENVISHPADACVSQFGPITDGQLVQAKGHVYSAQELLGG
HHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHCCCCCCCEEEEECCCEEEHHHHHCC
DAELAEEFIGGEFATLYLSPRDYHRVHMPCDATLRKMVYVPGDLFSVNPLTAENVPNLFA
CHHHHHHHHCCCEEEEEECCCCCCEEECCHHHHHHHEEECCCCEEECCCCCCCCCCHHHH
RNERVVCIFDTEFGPMAQVLVGATIVGSIETTWADTVTPPTGPAVKTWHYPLSGDDVICF
CCCEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEE
KKGEEMGRFKLGSTVINLFAPNSITFDESMKNGVPTRLGTPFAHIAK
ECCCCCCCEECCCCEEEEECCCCEEECHHHHCCCCCCCCCCHHHHCC
>Mature Secondary Structure 
SDNLKIGLQYLTPKHALTRLAGKLASAKMGWLTTAVIKWFIKQYNVEMSEAKNPDPEAY
CCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHH
STFNNFFVRELEDGARPINDDENVISHPADACVSQFGPITDGQLVQAKGHVYSAQELLGG
HHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHCCCCCCCEEEEECCCEEEHHHHHCC
DAELAEEFIGGEFATLYLSPRDYHRVHMPCDATLRKMVYVPGDLFSVNPLTAENVPNLFA
CHHHHHHHHCCCEEEEEECCCCCCEEECCHHHHHHHEEECCCCEEECCCCCCCCCCHHHH
RNERVVCIFDTEFGPMAQVLVGATIVGSIETTWADTVTPPTGPAVKTWHYPLSGDDVICF
CCCEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEE
KKGEEMGRFKLGSTVINLFAPNSITFDESMKNGVPTRLGTPFAHIAK
ECCCCCCCEECCCCEEEEECCCCEEECHHHHCCCCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA