Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

Click here to switch to the map view.

The map label for this gene is 209696192

Identifier: 209696192

GI number: 209696192

Start: 3018652

End: 3019614

Strand: Direct

Name: 209696192

Synonym: VSAL_I2786

Alternate gene names: NA

Gene position: 3018652-3019614 (Clockwise)

Preceding gene: 209696191

Following gene: 209696194

Centisome position: 90.78

GC content: 45.07

Gene sequence:

>963_bases
GTGATTCATTCTTTTATTGAACAAAACCAAACTTCAGATAAGCTAAAGATTGGGATAAACCACGATGGAATGGAAATGGG
ATATGAATGGCTAGCACTCGGAGCAGCTTGTCTATGGGCACTATCGAGCATGATCTCCGTTGCACCCGCTCGCCACCTTG
GCGCATTCGCTTATAGTCGCTGGCGCATGGGTTGTGTCACGATCATGTTATCGAGCCTTGCGTGGTTTACCGGTGGTTGG
CTATCAATTGAATCTGAACACCTATACCCAATGATGCTCTCAGGATTAATCGGTATTTTTATCGGCGATACCGCCTTATT
TGCCTGCTTTAATCGTATGGGACCTCGACAAGCCGGATTACTCTTTTCTTGCCATGCCTTATTCTCCGCTATTCTCGGCT
ATTGGTTATTCAATGAAACCTTACAAGGGTGGGAACTTATCGGTGCCATCTCTGTATTTTCTGGCGTCTCCATTGCTATT
TTCTTTGGGAAAAAAACAAATAACCAAGATACATGGGAGGAAGTAAAAGGAAATATTTGGATCGCAATCGCACTGGGTTT
ACTGGCCGCTTTTTGCCAAGCGCTTGGTGGCGTGATCGCAAAGCCTGTGATGCTAACCAGTGCTGACCCTATTGCTGCTT
CAGCGATTCGAATGGCCTCAGCTTTTGGCGCCCACAGCCTATTAAGAATGACTAACTTACCTATCTCACGCCCTATTACT
CCGATTAATCTACGTATATTAGGCATTGTTGCCTTAAATGGCTTTCTGGCGATGACCGTCGGCATGACATTAATCTTATA
TGCCTTACAAGAAGGAAATGTAGGCATGGTTGCCTTACTTTCTTCCACCACACCGATTATCATTTTGCCTTTGTTGTGGC
TATACACAAAAAAAGCACCTAACCGTTTTGCGTGGTTGGGTGCTTGTTTGGCGGTAATTGGCACTGGGCTTATCGTTAGC
TAA

Upstream 100 bases:

>100_bases
TAAAATAAACAGTAAATAGCGAACCTTGTGTTCGCTATTTTTTTATCTATTCATCTCCCTTCCTAGTAACCTCTCTCATG
GCAATATATGTCGAAAATAA

Downstream 100 bases:

>100_bases
TCCCTGTAAGTCAATGCACACTCACTTCTGTGGATTGGTATTACGCTCTATCAAAAGGAAAAGCCATCACTTGATCGATG
TGCTTTTCCCCCATTGCTAA

Product: integral membrane protein

Products: NA

Alternate protein names: Drug/Metabolite Exporter Family Protein; DMT Family Permease; Integral Membrane; Permease DMT Superfamily; Conserved Domain Protein; Transporter Drug/Metabolite Exporter Family; Integral Membrane Protein; Permeases Of Drug/Metabolite Transporter

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MIHSFIEQNQTSDKLKIGINHDGMEMGYEWLALGAACLWALSSMISVAPARHLGAFAYSRWRMGCVTIMLSSLAWFTGGW
LSIESEHLYPMMLSGLIGIFIGDTALFACFNRMGPRQAGLLFSCHALFSAILGYWLFNETLQGWELIGAISVFSGVSIAI
FFGKKTNNQDTWEEVKGNIWIAIALGLLAAFCQALGGVIAKPVMLTSADPIAASAIRMASAFGAHSLLRMTNLPISRPIT
PINLRILGIVALNGFLAMTVGMTLILYALQEGNVGMVALLSSTTPIIILPLLWLYTKKAPNRFAWLGACLAVIGTGLIVS

Sequences:

>Translated_320_residues
MIHSFIEQNQTSDKLKIGINHDGMEMGYEWLALGAACLWALSSMISVAPARHLGAFAYSRWRMGCVTIMLSSLAWFTGGW
LSIESEHLYPMMLSGLIGIFIGDTALFACFNRMGPRQAGLLFSCHALFSAILGYWLFNETLQGWELIGAISVFSGVSIAI
FFGKKTNNQDTWEEVKGNIWIAIALGLLAAFCQALGGVIAKPVMLTSADPIAASAIRMASAFGAHSLLRMTNLPISRPIT
PINLRILGIVALNGFLAMTVGMTLILYALQEGNVGMVALLSSTTPIIILPLLWLYTKKAPNRFAWLGACLAVIGTGLIVS
>Mature_320_residues
MIHSFIEQNQTSDKLKIGINHDGMEMGYEWLALGAACLWALSSMISVAPARHLGAFAYSRWRMGCVTIMLSSLAWFTGGW
LSIESEHLYPMMLSGLIGIFIGDTALFACFNRMGPRQAGLLFSCHALFSAILGYWLFNETLQGWELIGAISVFSGVSIAI
FFGKKTNNQDTWEEVKGNIWIAIALGLLAAFCQALGGVIAKPVMLTSADPIAASAIRMASAFGAHSLLRMTNLPISRPIT
PINLRILGIVALNGFLAMTVGMTLILYALQEGNVGMVALLSSTTPIIILPLLWLYTKKAPNRFAWLGACLAVIGTGLIVS

Specific function: Unknown

COG id: COG0697

COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34594; Mature: 34594

Theoretical pI: Translated: 8.37; Mature: 8.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIHSFIEQNQTSDKLKIGINHDGMEMGYEWLALGAACLWALSSMISVAPARHLGAFAYSR
CCCCHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
WRMGCVTIMLSSLAWFTGGWLSIESEHLYPMMLSGLIGIFIGDTALFACFNRMGPRQAGL
HHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
LFSCHALFSAILGYWLFNETLQGWELIGAISVFSGVSIAIFFGKKTNNQDTWEEVKGNIW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHCCCEE
IAIALGLLAAFCQALGGVIAKPVMLTSADPIAASAIRMASAFGAHSLLRMTNLPISRPIT
HHHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PINLRILGIVALNGFLAMTVGMTLILYALQEGNVGMVALLSSTTPIIILPLLWLYTKKAP
CCHHEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCC
NRFAWLGACLAVIGTGLIVS
CHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MIHSFIEQNQTSDKLKIGINHDGMEMGYEWLALGAACLWALSSMISVAPARHLGAFAYSR
CCCCHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
WRMGCVTIMLSSLAWFTGGWLSIESEHLYPMMLSGLIGIFIGDTALFACFNRMGPRQAGL
HHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
LFSCHALFSAILGYWLFNETLQGWELIGAISVFSGVSIAIFFGKKTNNQDTWEEVKGNIW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHCCCEE
IAIALGLLAAFCQALGGVIAKPVMLTSADPIAASAIRMASAFGAHSLLRMTNLPISRPIT
HHHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PINLRILGIVALNGFLAMTVGMTLILYALQEGNVGMVALLSSTTPIIILPLLWLYTKKAP
CCHHEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCC
NRFAWLGACLAVIGTGLIVS
CHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA