| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209696192
Identifier: 209696192
GI number: 209696192
Start: 3018652
End: 3019614
Strand: Direct
Name: 209696192
Synonym: VSAL_I2786
Alternate gene names: NA
Gene position: 3018652-3019614 (Clockwise)
Preceding gene: 209696191
Following gene: 209696194
Centisome position: 90.78
GC content: 45.07
Gene sequence:
>963_bases GTGATTCATTCTTTTATTGAACAAAACCAAACTTCAGATAAGCTAAAGATTGGGATAAACCACGATGGAATGGAAATGGG ATATGAATGGCTAGCACTCGGAGCAGCTTGTCTATGGGCACTATCGAGCATGATCTCCGTTGCACCCGCTCGCCACCTTG GCGCATTCGCTTATAGTCGCTGGCGCATGGGTTGTGTCACGATCATGTTATCGAGCCTTGCGTGGTTTACCGGTGGTTGG CTATCAATTGAATCTGAACACCTATACCCAATGATGCTCTCAGGATTAATCGGTATTTTTATCGGCGATACCGCCTTATT TGCCTGCTTTAATCGTATGGGACCTCGACAAGCCGGATTACTCTTTTCTTGCCATGCCTTATTCTCCGCTATTCTCGGCT ATTGGTTATTCAATGAAACCTTACAAGGGTGGGAACTTATCGGTGCCATCTCTGTATTTTCTGGCGTCTCCATTGCTATT TTCTTTGGGAAAAAAACAAATAACCAAGATACATGGGAGGAAGTAAAAGGAAATATTTGGATCGCAATCGCACTGGGTTT ACTGGCCGCTTTTTGCCAAGCGCTTGGTGGCGTGATCGCAAAGCCTGTGATGCTAACCAGTGCTGACCCTATTGCTGCTT CAGCGATTCGAATGGCCTCAGCTTTTGGCGCCCACAGCCTATTAAGAATGACTAACTTACCTATCTCACGCCCTATTACT CCGATTAATCTACGTATATTAGGCATTGTTGCCTTAAATGGCTTTCTGGCGATGACCGTCGGCATGACATTAATCTTATA TGCCTTACAAGAAGGAAATGTAGGCATGGTTGCCTTACTTTCTTCCACCACACCGATTATCATTTTGCCTTTGTTGTGGC TATACACAAAAAAAGCACCTAACCGTTTTGCGTGGTTGGGTGCTTGTTTGGCGGTAATTGGCACTGGGCTTATCGTTAGC TAA
Upstream 100 bases:
>100_bases TAAAATAAACAGTAAATAGCGAACCTTGTGTTCGCTATTTTTTTATCTATTCATCTCCCTTCCTAGTAACCTCTCTCATG GCAATATATGTCGAAAATAA
Downstream 100 bases:
>100_bases TCCCTGTAAGTCAATGCACACTCACTTCTGTGGATTGGTATTACGCTCTATCAAAAGGAAAAGCCATCACTTGATCGATG TGCTTTTCCCCCATTGCTAA
Product: integral membrane protein
Products: NA
Alternate protein names: Drug/Metabolite Exporter Family Protein; DMT Family Permease; Integral Membrane; Permease DMT Superfamily; Conserved Domain Protein; Transporter Drug/Metabolite Exporter Family; Integral Membrane Protein; Permeases Of Drug/Metabolite Transporter
Number of amino acids: Translated: 320; Mature: 320
Protein sequence:
>320_residues MIHSFIEQNQTSDKLKIGINHDGMEMGYEWLALGAACLWALSSMISVAPARHLGAFAYSRWRMGCVTIMLSSLAWFTGGW LSIESEHLYPMMLSGLIGIFIGDTALFACFNRMGPRQAGLLFSCHALFSAILGYWLFNETLQGWELIGAISVFSGVSIAI FFGKKTNNQDTWEEVKGNIWIAIALGLLAAFCQALGGVIAKPVMLTSADPIAASAIRMASAFGAHSLLRMTNLPISRPIT PINLRILGIVALNGFLAMTVGMTLILYALQEGNVGMVALLSSTTPIIILPLLWLYTKKAPNRFAWLGACLAVIGTGLIVS
Sequences:
>Translated_320_residues MIHSFIEQNQTSDKLKIGINHDGMEMGYEWLALGAACLWALSSMISVAPARHLGAFAYSRWRMGCVTIMLSSLAWFTGGW LSIESEHLYPMMLSGLIGIFIGDTALFACFNRMGPRQAGLLFSCHALFSAILGYWLFNETLQGWELIGAISVFSGVSIAI FFGKKTNNQDTWEEVKGNIWIAIALGLLAAFCQALGGVIAKPVMLTSADPIAASAIRMASAFGAHSLLRMTNLPISRPIT PINLRILGIVALNGFLAMTVGMTLILYALQEGNVGMVALLSSTTPIIILPLLWLYTKKAPNRFAWLGACLAVIGTGLIVS >Mature_320_residues MIHSFIEQNQTSDKLKIGINHDGMEMGYEWLALGAACLWALSSMISVAPARHLGAFAYSRWRMGCVTIMLSSLAWFTGGW LSIESEHLYPMMLSGLIGIFIGDTALFACFNRMGPRQAGLLFSCHALFSAILGYWLFNETLQGWELIGAISVFSGVSIAI FFGKKTNNQDTWEEVKGNIWIAIALGLLAAFCQALGGVIAKPVMLTSADPIAASAIRMASAFGAHSLLRMTNLPISRPIT PINLRILGIVALNGFLAMTVGMTLILYALQEGNVGMVALLSSTTPIIILPLLWLYTKKAPNRFAWLGACLAVIGTGLIVS
Specific function: Unknown
COG id: COG0697
COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34594; Mature: 34594
Theoretical pI: Translated: 8.37; Mature: 8.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 4.7 %Met (Translated Protein) 6.6 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 4.7 %Met (Mature Protein) 6.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIHSFIEQNQTSDKLKIGINHDGMEMGYEWLALGAACLWALSSMISVAPARHLGAFAYSR CCCCHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH WRMGCVTIMLSSLAWFTGGWLSIESEHLYPMMLSGLIGIFIGDTALFACFNRMGPRQAGL HHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH LFSCHALFSAILGYWLFNETLQGWELIGAISVFSGVSIAIFFGKKTNNQDTWEEVKGNIW HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHCCCEE IAIALGLLAAFCQALGGVIAKPVMLTSADPIAASAIRMASAFGAHSLLRMTNLPISRPIT HHHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC PINLRILGIVALNGFLAMTVGMTLILYALQEGNVGMVALLSSTTPIIILPLLWLYTKKAP CCHHEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCC NRFAWLGACLAVIGTGLIVS CHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MIHSFIEQNQTSDKLKIGINHDGMEMGYEWLALGAACLWALSSMISVAPARHLGAFAYSR CCCCHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH WRMGCVTIMLSSLAWFTGGWLSIESEHLYPMMLSGLIGIFIGDTALFACFNRMGPRQAGL HHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH LFSCHALFSAILGYWLFNETLQGWELIGAISVFSGVSIAIFFGKKTNNQDTWEEVKGNIW HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHCCCEE IAIALGLLAAFCQALGGVIAKPVMLTSADPIAASAIRMASAFGAHSLLRMTNLPISRPIT HHHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC PINLRILGIVALNGFLAMTVGMTLILYALQEGNVGMVALLSSTTPIIILPLLWLYTKKAP CCHHEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCC NRFAWLGACLAVIGTGLIVS CHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA