| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is argHA [H]
Identifier: 209696117
GI number: 209696117
Start: 2934250
End: 2936124
Strand: Direct
Name: argHA [H]
Synonym: VSAL_I2710
Alternate gene names: 209696117
Gene position: 2934250-2936124 (Clockwise)
Preceding gene: 209696109
Following gene: 209696121
Centisome position: 88.24
GC content: 41.6
Gene sequence:
>1875_bases ATGGCATTATGGGGCGGACGTTTTAGTCAAGCAGCAGACACAAGATTTAAACAGTTTAACGATTCACTTCGTATTGATTA TCGCCTTGCAGAACAAGACATTGTCGGCTCTATCGCATGGTCTAAAGCACTACTTTCTGTCAATGTTATTACAGAAATAG AACAACAAAAACTTGAATTAGCATTGAATGAATTGAAATTAGAAGTGATGGAAGATCCTGAACAGATCTTATTGTCAGAC GCTGAAGATATTCATAGCTGGGTTGAGACACAGCTTATCGGTAAAGTGGGTGATTTAGGTAAAAAACTCCACACTGGTCG TTCTCGTAATGATCAAGTGGCGACAGATTTAAAATTGTGGTGTCGTCAACAAGGCCATCAACTGCTTCGCACATTAGATT TATTATTGAACCAACTCGTGAATGTAGCGAGTGAGCATCAGGCGACGGTGCTTCCTGGTTATACTCACCTACAACGTGCA CAACCTGTGACATTTGCGCATTGGTGTTTGGCGTATGTTGAAATGATTGAGCGTGATTACTCTCGCCTTGAAGATGCGAT TAAGCGTTTAGATACGTGTCCATTAGGATCAGGGGCTTTGGCTGGAACGGCTTATCCAATGGATCGTGAGAAATTGGCTC GTAATCTTGGTTTTCAAAGAGCAACACGTAATAGCTTAGACTCTGTATCGGATCGTGATCATGTGATGGAGTTAATGTCG ATTGCTTCAATCTCTATGGTTCACCTTTCTCGTCTTGCCGAAGACATGATTTTTTATAACTCAGGTGAATCTAATTTCAT TGAGTTAGCGGATACCGTGACGTCTGGTTCATCATTGATGCCACAGAAAAAGAACCCGGATGCCTTAGAGCTTATCCGTG GTAAATGTGGCCGTGTATATGGCGCATTGGCTGGTATGATGATGACAGTAAAAGCGTTGCCCTTAGCCTATAATAAAGAC ATGCAAGAAGACAAAGAAGGTTTGTTTGATGCATTAGACAGCTGGTCTGATTGTATTGAAATGGCTGCACTTTGCTTTGA AGGCATTAAAATAAATAAAGAACGTACTTTAGAAGCGGCGAAACAAGGGTATGCAAACTCAACCGAATTAGCCGATTATT TGGTAGCGAAAGGCATTCCATTCCGCGAAGCTCATCATATCGTTGGTGTTGCTGTGGTTAGTGCAATAGAAAAAGGCTGT GCATTAGAAGAGTTATCTATTGCAGAATTAAAAGTATTCTCTGATGTGATTGAAGACGATGTGTATGCAATTTTAACTAT CGAATCTTGTCTTGCGAAACGTAATGCCCTAGGTGGTGTTGCTCCTGAACAGGTAGCTTATGCTGTTGAGCAAGCAGGTA AACGTTTAGAAGAGCGTGATTCGACAGGGGTTAAAGTTCGTCCTGCACGATTAACGGATTTAGATGCATTAGAAGGAATG GTCGCTTACTGGGCTGGTCTTGGAGAGAATTTACCACGTAGTCGTAATGAGTTGGTGCGTGATATTGGATCGTTTGCAGT ATCAGAACATCATGGGGAAGTGACTGGGTGTGCCTCTTTGTATGTGTACGATTCTGGTTTAGCTGAAATTCGCTCATTAG GTGTTGAAGCGGGATGGCAGAGTCAAGGTCAAGGGAAAGCGATTGTTCAACACTTGGTAGAAAAAGCGCGTGAAATGGCG ATTAATAAAGTGTTTGTATTAACTCGTGTGCCTGAATTCTTTATGAAACAAGATTTTATTCCAACATCTCGTTCGTTGTT ACCAGAGAAAGTATTGAAAGATTGCGATCAGTGTCCTCGTCAACATGCGTGTGATGAAGTGGCATTAGAGGTGAATCTGC AAGAGCAAATTATTATCAAAACGAATGTGGCTTAA
Upstream 100 bases:
>100_bases TGGAATTGCCGTAAGTTTGAATCATCAAGAAAAATACTGAATTAAATCAGACTTAATAGTTTCAAAAAGCAGTGAGCACT GTGCATTTAGGAGAAACACC
Downstream 100 bases:
>100_bases CTGGCGTTGAATGGTAATGATCGGCACTGAGCTAAAAATACAGAATAAAGAGAAAAAGTGGTGAACTTTTTAATTAAAGA CTAGTCTTATTAATACTGCT
Product: bifunctional argininosuccinate lyase/N-acetylglutamate synthase
Products: NA
Alternate protein names: Argininosuccinate lyase; ASAL; Arginosuccinase; Probable acetyltransferase [H]
Number of amino acids: Translated: 624; Mature: 623
Protein sequence:
>624_residues MALWGGRFSQAADTRFKQFNDSLRIDYRLAEQDIVGSIAWSKALLSVNVITEIEQQKLELALNELKLEVMEDPEQILLSD AEDIHSWVETQLIGKVGDLGKKLHTGRSRNDQVATDLKLWCRQQGHQLLRTLDLLLNQLVNVASEHQATVLPGYTHLQRA QPVTFAHWCLAYVEMIERDYSRLEDAIKRLDTCPLGSGALAGTAYPMDREKLARNLGFQRATRNSLDSVSDRDHVMELMS IASISMVHLSRLAEDMIFYNSGESNFIELADTVTSGSSLMPQKKNPDALELIRGKCGRVYGALAGMMMTVKALPLAYNKD MQEDKEGLFDALDSWSDCIEMAALCFEGIKINKERTLEAAKQGYANSTELADYLVAKGIPFREAHHIVGVAVVSAIEKGC ALEELSIAELKVFSDVIEDDVYAILTIESCLAKRNALGGVAPEQVAYAVEQAGKRLEERDSTGVKVRPARLTDLDALEGM VAYWAGLGENLPRSRNELVRDIGSFAVSEHHGEVTGCASLYVYDSGLAEIRSLGVEAGWQSQGQGKAIVQHLVEKAREMA INKVFVLTRVPEFFMKQDFIPTSRSLLPEKVLKDCDQCPRQHACDEVALEVNLQEQIIIKTNVA
Sequences:
>Translated_624_residues MALWGGRFSQAADTRFKQFNDSLRIDYRLAEQDIVGSIAWSKALLSVNVITEIEQQKLELALNELKLEVMEDPEQILLSD AEDIHSWVETQLIGKVGDLGKKLHTGRSRNDQVATDLKLWCRQQGHQLLRTLDLLLNQLVNVASEHQATVLPGYTHLQRA QPVTFAHWCLAYVEMIERDYSRLEDAIKRLDTCPLGSGALAGTAYPMDREKLARNLGFQRATRNSLDSVSDRDHVMELMS IASISMVHLSRLAEDMIFYNSGESNFIELADTVTSGSSLMPQKKNPDALELIRGKCGRVYGALAGMMMTVKALPLAYNKD MQEDKEGLFDALDSWSDCIEMAALCFEGIKINKERTLEAAKQGYANSTELADYLVAKGIPFREAHHIVGVAVVSAIEKGC ALEELSIAELKVFSDVIEDDVYAILTIESCLAKRNALGGVAPEQVAYAVEQAGKRLEERDSTGVKVRPARLTDLDALEGM VAYWAGLGENLPRSRNELVRDIGSFAVSEHHGEVTGCASLYVYDSGLAEIRSLGVEAGWQSQGQGKAIVQHLVEKAREMA INKVFVLTRVPEFFMKQDFIPTSRSLLPEKVLKDCDQCPRQHACDEVALEVNLQEQIIIKTNVA >Mature_623_residues ALWGGRFSQAADTRFKQFNDSLRIDYRLAEQDIVGSIAWSKALLSVNVITEIEQQKLELALNELKLEVMEDPEQILLSDA EDIHSWVETQLIGKVGDLGKKLHTGRSRNDQVATDLKLWCRQQGHQLLRTLDLLLNQLVNVASEHQATVLPGYTHLQRAQ PVTFAHWCLAYVEMIERDYSRLEDAIKRLDTCPLGSGALAGTAYPMDREKLARNLGFQRATRNSLDSVSDRDHVMELMSI ASISMVHLSRLAEDMIFYNSGESNFIELADTVTSGSSLMPQKKNPDALELIRGKCGRVYGALAGMMMTVKALPLAYNKDM QEDKEGLFDALDSWSDCIEMAALCFEGIKINKERTLEAAKQGYANSTELADYLVAKGIPFREAHHIVGVAVVSAIEKGCA LEELSIAELKVFSDVIEDDVYAILTIESCLAKRNALGGVAPEQVAYAVEQAGKRLEERDSTGVKVRPARLTDLDALEGMV AYWAGLGENLPRSRNELVRDIGSFAVSEHHGEVTGCASLYVYDSGLAEIRSLGVEAGWQSQGQGKAIVQHLVEKAREMAI NKVFVLTRVPEFFMKQDFIPTSRSLLPEKVLKDCDQCPRQHACDEVALEVNLQEQIIIKTNVA
Specific function: Arginine biosynthesis; eighth (last) step. [C]
COG id: COG0165
COG function: function code E; Argininosuccinate lyase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 N-acetyltransferase domain [H]
Homologues:
Organism=Homo sapiens, GI31541964, Length=449, Percent_Identity=43.652561247216, Blast_Score=362, Evalue=1e-100, Organism=Homo sapiens, GI68303542, Length=449, Percent_Identity=43.652561247216, Blast_Score=362, Evalue=1e-100, Organism=Homo sapiens, GI68303549, Length=449, Percent_Identity=41.6481069042316, Blast_Score=331, Evalue=2e-90, Organism=Homo sapiens, GI68303547, Length=449, Percent_Identity=40.9799554565702, Blast_Score=324, Evalue=1e-88, Organism=Escherichia coli, GI1790398, Length=456, Percent_Identity=71.9298245614035, Blast_Score=675, Evalue=0.0, Organism=Saccharomyces cerevisiae, GI6321806, Length=446, Percent_Identity=42.6008968609865, Blast_Score=354, Evalue=2e-98, Organism=Saccharomyces cerevisiae, GI6324993, Length=330, Percent_Identity=25.7575757575758, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI221473854, Length=449, Percent_Identity=42.0935412026726, Blast_Score=352, Evalue=6e-97, Organism=Drosophila melanogaster, GI78706858, Length=449, Percent_Identity=42.0935412026726, Blast_Score=352, Evalue=6e-97,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000182 - InterPro: IPR016181 - InterPro: IPR009049 - InterPro: IPR011244 - InterPro: IPR003031 - InterPro: IPR000362 - InterPro: IPR020557 - InterPro: IPR008948 - InterPro: IPR022761 [H]
Pfam domain/function: PF00583 Acetyltransf_1; PF00206 Lyase_1 [H]
EC number: =4.3.2.1 [H]
Molecular weight: Translated: 69303; Mature: 69172
Theoretical pI: Translated: 4.92; Mature: 4.92
Prosite motif: PS00163 FUMARATE_LYASES
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALWGGRFSQAADTRFKQFNDSLRIDYRLAEQDIVGSIAWSKALLSVNVITEIEQQKLEL CCCCCCCCHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALNELKLEVMEDPEQILLSDAEDIHSWVETQLIGKVGDLGKKLHTGRSRNDQVATDLKLW HHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH CRQQGHQLLRTLDLLLNQLVNVASEHQATVLPGYTHLQRAQPVTFAHWCLAYVEMIERDY HHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHCCCCHHHHHHHHHHHHHHHHH SRLEDAIKRLDTCPLGSGALAGTAYPMDREKLARNLGFQRATRNSLDSVSDRDHVMELMS HHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHH IASISMVHLSRLAEDMIFYNSGESNFIELADTVTSGSSLMPQKKNPDALELIRGKCGRVY HHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH GALAGMMMTVKALPLAYNKDMQEDKEGLFDALDSWSDCIEMAALCFEGIKINKERTLEAA HHHHHHHHHHHHHCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH KQGYANSTELADYLVAKGIPFREAHHIVGVAVVSAIEKGCALEELSIAELKVFSDVIEDD HCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC VYAILTIESCLAKRNALGGVAPEQVAYAVEQAGKRLEERDSTGVKVRPARLTDLDALEGM HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHH VAYWAGLGENLPRSRNELVRDIGSFAVSEHHGEVTGCASLYVYDSGLAEIRSLGVEAGWQ HHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHEEEEEECCCHHHHHHCCCCCCCC SQGQGKAIVQHLVEKAREMAINKVFVLTRVPEFFMKQDFIPTSRSLLPEKVLKDCDQCPR CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCHHHHCHHHHHHHHHHCHH QHACDEVALEVNLQEQIIIKTNVA HHCCCHHEEEECCCCEEEEEECCC >Mature Secondary Structure ALWGGRFSQAADTRFKQFNDSLRIDYRLAEQDIVGSIAWSKALLSVNVITEIEQQKLEL CCCCCCCHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALNELKLEVMEDPEQILLSDAEDIHSWVETQLIGKVGDLGKKLHTGRSRNDQVATDLKLW HHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH CRQQGHQLLRTLDLLLNQLVNVASEHQATVLPGYTHLQRAQPVTFAHWCLAYVEMIERDY HHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHCCCCHHHHHHHHHHHHHHHHH SRLEDAIKRLDTCPLGSGALAGTAYPMDREKLARNLGFQRATRNSLDSVSDRDHVMELMS HHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHH IASISMVHLSRLAEDMIFYNSGESNFIELADTVTSGSSLMPQKKNPDALELIRGKCGRVY HHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH GALAGMMMTVKALPLAYNKDMQEDKEGLFDALDSWSDCIEMAALCFEGIKINKERTLEAA HHHHHHHHHHHHHCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH KQGYANSTELADYLVAKGIPFREAHHIVGVAVVSAIEKGCALEELSIAELKVFSDVIEDD HCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC VYAILTIESCLAKRNALGGVAPEQVAYAVEQAGKRLEERDSTGVKVRPARLTDLDALEGM HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHH VAYWAGLGENLPRSRNELVRDIGSFAVSEHHGEVTGCASLYVYDSGLAEIRSLGVEAGWQ HHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHEEEEEECCCHHHHHHCCCCCCCC SQGQGKAIVQHLVEKAREMAINKVFVLTRVPEFFMKQDFIPTSRSLLPEKVLKDCDQCPR CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCHHHHCHHHHHHHHHHCHH QHACDEVALEVNLQEQIIIKTNVA HHCCCHHEEEECCCCEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA