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The map label for this gene is oxyR [H]

Identifier: 209696121

GI number: 209696121

Start: 2939132

End: 2940040

Strand: Direct

Name: oxyR [H]

Synonym: VSAL_I2714

Alternate gene names: 209696121

Gene position: 2939132-2940040 (Clockwise)

Preceding gene: 209696117

Following gene: 209696123

Centisome position: 88.39

GC content: 42.02

Gene sequence:

>909_bases
ATGAATATCCGTGATTTTGAGTACTTGGTCGCACTTGCTGAGCATAAACATTTTCGTAAAGCTGCAGAGTCTTGTTTTGT
TAGTCAACCAACGTTAAGTGGTCAAATCAAGAAGTTAGAAGAAGAAGTAGGATTGACGCTGCTAGAGAGAACCAGTCGTA
AAGTATTGTTCACCGAAGCGGGCTTACAATTGGTCGATCAAGCAAAGCGTATTCTTATTGAAGTAAAGTTATTTTCAGAG
CTTGCTAATCAGCAAGGTAAAGAGATGACAGGGCCATTACATTTAGGCTTTATCCCAACGGTAGGTCCTTATTTGTTGCC
TTGGATCGTACCAACATTAAAAGCACAGTTTCCTGATTTGAATTTATATCTTCATGAAGCCCAGACACATCAATTGGTTA
AAATGCTAGAAGAAGGCAAGATTGATTGTATGATTTTGGCCTCGGTTGATGAGACGAGTGGCTTTATTGAAGTGCCTGTC
TATGATGAACCGATGGTGTTGGCTGTCCCTAAAGAGCATAAGTGGGCAGAAGAAAAGTCGATCGATATGTCTCGTCTTAA
TGGTGAATCCGTACTGATGCTTGGCGATGGACATTGTTTACGAGATCAAGCATTAGGTTTTTGCTTTGCGGCAGGCGCAA
AAGACGACGATCACTTTAAAGCAACAAGCTTAGAAACGTTGCGAAATATGGTCGCCGCTGGAGGAGGGATAACATTGATG
CCTTATCTTTCTGTGCCAAAAGAAAAAGAGCGTGATGGGGTGTGTTATTTGCCAGCGAAAGCGCCTGTACCGCATCGCCA
AATTGTATTGGCTTATCGTCCGGGTTCACCCTTAAAGAGCCGCTATGAGGCATTAGCAAAAGAAATAGAAAGTAAAATGG
CTGACGTTATCCATCAAACTGTTTTATAG

Upstream 100 bases:

>100_bases
CAGCTTGATAGTTCTAATCGTTTGGTGTTATCGTTTCAATCGTTAAAAGCTATCGAACTTATTGCCATCAATAAGATATA
AGCTTTCAGGAGTGTAATAC

Downstream 100 bases:

>100_bases
ATAAAATACGAATAAAAAAAGGGACGCTAAGTGAGCGTCCCTTGTTCTTTACTTTAAACTAAGTACTTAGAATAAGCTTT
CGTCTTCTTCGCCGTCGCCA

Product: DNA-binding transcriptional regulator OxyR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MNIRDFEYLVALAEHKHFRKAAESCFVSQPTLSGQIKKLEEEVGLTLLERTSRKVLFTEAGLQLVDQAKRILIEVKLFSE
LANQQGKEMTGPLHLGFIPTVGPYLLPWIVPTLKAQFPDLNLYLHEAQTHQLVKMLEEGKIDCMILASVDETSGFIEVPV
YDEPMVLAVPKEHKWAEEKSIDMSRLNGESVLMLGDGHCLRDQALGFCFAAGAKDDDHFKATSLETLRNMVAAGGGITLM
PYLSVPKEKERDGVCYLPAKAPVPHRQIVLAYRPGSPLKSRYEALAKEIESKMADVIHQTVL

Sequences:

>Translated_302_residues
MNIRDFEYLVALAEHKHFRKAAESCFVSQPTLSGQIKKLEEEVGLTLLERTSRKVLFTEAGLQLVDQAKRILIEVKLFSE
LANQQGKEMTGPLHLGFIPTVGPYLLPWIVPTLKAQFPDLNLYLHEAQTHQLVKMLEEGKIDCMILASVDETSGFIEVPV
YDEPMVLAVPKEHKWAEEKSIDMSRLNGESVLMLGDGHCLRDQALGFCFAAGAKDDDHFKATSLETLRNMVAAGGGITLM
PYLSVPKEKERDGVCYLPAKAPVPHRQIVLAYRPGSPLKSRYEALAKEIESKMADVIHQTVL
>Mature_302_residues
MNIRDFEYLVALAEHKHFRKAAESCFVSQPTLSGQIKKLEEEVGLTLLERTSRKVLFTEAGLQLVDQAKRILIEVKLFSE
LANQQGKEMTGPLHLGFIPTVGPYLLPWIVPTLKAQFPDLNLYLHEAQTHQLVKMLEEGKIDCMILASVDETSGFIEVPV
YDEPMVLAVPKEHKWAEEKSIDMSRLNGESVLMLGDGHCLRDQALGFCFAAGAKDDDHFKATSLETLRNMVAAGGGITLM
PYLSVPKEKERDGVCYLPAKAPVPHRQIVLAYRPGSPLKSRYEALAKEIESKMADVIHQTVL

Specific function: Required for the induction of a regulon of hydrogen peroxide inducible genes such as catalase and glutathione- reductase [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790399, Length=293, Percent_Identity=66.8941979522184, Blast_Score=422, Evalue=1e-119,
Organism=Escherichia coli, GI157672245, Length=276, Percent_Identity=27.1739130434783, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1788887, Length=304, Percent_Identity=27.9605263157895, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1787879, Length=247, Percent_Identity=28.7449392712551, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI145693105, Length=297, Percent_Identity=28.2828282828283, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1788748, Length=293, Percent_Identity=26.2798634812287, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI2367136, Length=264, Percent_Identity=25, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1787530, Length=283, Percent_Identity=21.5547703180212, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1790208, Length=243, Percent_Identity=25.9259259259259, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1788297, Length=245, Percent_Identity=25.7142857142857, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788626, Length=296, Percent_Identity=25.3378378378378, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787601, Length=145, Percent_Identity=26.8965517241379, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788296, Length=243, Percent_Identity=23.0452674897119, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33725; Mature: 33725

Theoretical pI: Translated: 6.19; Mature: 6.19

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIRDFEYLVALAEHKHFRKAAESCFVSQPTLSGQIKKLEEEVGLTLLERTSRKVLFTEA
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCHHHHHHCCCEEEEEHH
GLQLVDQAKRILIEVKLFSELANQQGKEMTGPLHLGFIPTVGPYLLPWIVPTLKAQFPDL
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCC
NLYLHEAQTHQLVKMLEEGKIDCMILASVDETSGFIEVPVYDEPMVLAVPKEHKWAEEKS
EEEEEHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEECCCCCCEEEEECCCCCCCHHHC
IDMSRLNGESVLMLGDGHCLRDQALGFCFAAGAKDDDHFKATSLETLRNMVAAGGGITLM
CCHHHCCCCEEEEEECCCCCHHHHCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEE
PYLSVPKEKERDGVCYLPAKAPVPHRQIVLAYRPGSPLKSRYEALAKEIESKMADVIHQT
EECCCCCCCCCCCEEEECCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
VL
CC
>Mature Secondary Structure
MNIRDFEYLVALAEHKHFRKAAESCFVSQPTLSGQIKKLEEEVGLTLLERTSRKVLFTEA
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCHHHHHHCCCEEEEEHH
GLQLVDQAKRILIEVKLFSELANQQGKEMTGPLHLGFIPTVGPYLLPWIVPTLKAQFPDL
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCC
NLYLHEAQTHQLVKMLEEGKIDCMILASVDETSGFIEVPVYDEPMVLAVPKEHKWAEEKS
EEEEEHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEECCCCCCEEEEECCCCCCCHHHC
IDMSRLNGESVLMLGDGHCLRDQALGFCFAAGAKDDDHFKATSLETLRNMVAAGGGITLM
CCHHHCCCCEEEEEECCCCCHHHHCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEE
PYLSVPKEKERDGVCYLPAKAPVPHRQIVLAYRPGSPLKSRYEALAKEIESKMADVIHQT
EECCCCCCCCCCCEEEECCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
VL
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA