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The map label for this gene is csiR [H]

Identifier: 209696109

GI number: 209696109

Start: 2926447

End: 2927106

Strand: Direct

Name: csiR [H]

Synonym: VSAL_I2702

Alternate gene names: 209696109

Gene position: 2926447-2927106 (Clockwise)

Preceding gene: 209696108

Following gene: 209696117

Centisome position: 88.01

GC content: 37.42

Gene sequence:

>660_bases
GTGTCTAGCCCTACCCTTACTGATAAAGTATCAAAAATGATCCACCAAGATATTCTTAGTGGCGATCTTCACCCCGGTAA
AAAGCTGGTTGTTGCTGAATTAAAAAAACGCTACAACGTAGGCGCATCTCCAATTCGTGAAGCTCTTGTTCAATTATCAT
GGAGCAAATACGTTAAGCTAGAACCTCAAAAGGGATGTTGGGTTGCAACGATCTCAATTATTGAACTTGAAGAGCTATTC
GAAGGTTTACGAGTTGTAGCAAAAATGCTGTTAGAAAAAGCCATTTCTAAAGGTGATGAAGCGTGGGAACTCAGTGTATT
AACAAGCTACCACAGATTAAGTAAAGTCAACTTAGAGAATACACCAGAAGCAATCCAAGAATGGACACAGCGTCACTCTG
ACTTTCATAACTCACTGCTTTCTGGCGCAGACGCTCCTATTATGTTCCAGTTTTATCAAGAATTAACAAACCAAATTAGG
CGTTATCGCCATCTTCAAAATACACATAAAATGTTTAATAAAGAACATACTGATTATTTGGAAGAACATGAAACAATCAT
GAAATTAACGCTTTCTCGAAATACAGATCAAGCGGTTGCATTATTAGAAAGTCATTATATTAAGACCATGGATCTACTCT
CTGCCTATTTTGAAGCTTAA

Upstream 100 bases:

>100_bases
CAGATGGTATAGCCACCCTTTATTTAGCACACCTTACTCGATAAGCTAAACACAGGCCTAAACCGATGATCTGCTATGAA
TATTTATAGAGAGAATCGCA

Downstream 100 bases:

>100_bases
TTTGTCTACAAAAAAACCAGGTAAATCACCTGGTTTTTTGTATTCGTGTTTAGCTTACCATCCAAAAAACTCTTTATTAT
GCGTACCAATCAATAACACC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: Carbon starvation induced regulator [H]

Number of amino acids: Translated: 219; Mature: 218

Protein sequence:

>219_residues
MSSPTLTDKVSKMIHQDILSGDLHPGKKLVVAELKKRYNVGASPIREALVQLSWSKYVKLEPQKGCWVATISIIELEELF
EGLRVVAKMLLEKAISKGDEAWELSVLTSYHRLSKVNLENTPEAIQEWTQRHSDFHNSLLSGADAPIMFQFYQELTNQIR
RYRHLQNTHKMFNKEHTDYLEEHETIMKLTLSRNTDQAVALLESHYIKTMDLLSAYFEA

Sequences:

>Translated_219_residues
MSSPTLTDKVSKMIHQDILSGDLHPGKKLVVAELKKRYNVGASPIREALVQLSWSKYVKLEPQKGCWVATISIIELEELF
EGLRVVAKMLLEKAISKGDEAWELSVLTSYHRLSKVNLENTPEAIQEWTQRHSDFHNSLLSGADAPIMFQFYQELTNQIR
RYRHLQNTHKMFNKEHTDYLEEHETIMKLTLSRNTDQAVALLESHYIKTMDLLSAYFEA
>Mature_218_residues
SSPTLTDKVSKMIHQDILSGDLHPGKKLVVAELKKRYNVGASPIREALVQLSWSKYVKLEPQKGCWVATISIIELEELFE
GLRVVAKMLLEKAISKGDEAWELSVLTSYHRLSKVNLENTPEAIQEWTQRHSDFHNSLLSGADAPIMFQFYQELTNQIRR
YRHLQNTHKMFNKEHTDYLEEHETIMKLTLSRNTDQAVALLESHYIKTMDLLSAYFEA

Specific function: Modulates expression of csiD and lhgO in a temporal manner during entry into stationary phase or during the first few hours of carbon starvation [H]

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082149, Length=204, Percent_Identity=30.8823529411765, Blast_Score=108, Evalue=2e-25,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25316; Mature: 25185

Theoretical pI: Translated: 6.87; Mature: 6.87

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSPTLTDKVSKMIHQDILSGDLHPGKKLVVAELKKRYNVGASPIREALVQLSWSKYVKL
CCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEE
EPQKGCWVATISIIELEELFEGLRVVAKMLLEKAISKGDEAWELSVLTSYHRLSKVNLEN
CCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC
TPEAIQEWTQRHSDFHNSLLSGADAPIMFQFYQELTNQIRRYRHLQNTHKMFNKEHTDYL
CHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
EEHETIMKLTLSRNTDQAVALLESHYIKTMDLLSAYFEA
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SSPTLTDKVSKMIHQDILSGDLHPGKKLVVAELKKRYNVGASPIREALVQLSWSKYVKL
CCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEE
EPQKGCWVATISIIELEELFEGLRVVAKMLLEKAISKGDEAWELSVLTSYHRLSKVNLEN
CCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC
TPEAIQEWTQRHSDFHNSLLSGADAPIMFQFYQELTNQIRRYRHLQNTHKMFNKEHTDYL
CHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
EEHETIMKLTLSRNTDQAVALLESHYIKTMDLLSAYFEA
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8297211; 7984428 [H]