| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is glxK [H]
Identifier: 209696010
GI number: 209696010
Start: 2797525
End: 2798664
Strand: Direct
Name: glxK [H]
Synonym: VSAL_I2594
Alternate gene names: 209696010
Gene position: 2797525-2798664 (Clockwise)
Preceding gene: 209696009
Following gene: 209696018
Centisome position: 84.13
GC content: 41.14
Gene sequence:
>1140_bases ATGAAAATTGTTATTGCTCCCGATTCATACAAAGAAAGTTTGACCGCAATGGAAGTTGCTACCGCAATTGAAGCTGGATT TAAACAAGTGCTACCGAATGCTGAATACATAAAACTCCCAATGGCTGACGGAGGCGAAGGCACAGTTCAATCTCTAATCG ATGCTACTGGCGGATCCATTATTGAATGCCAAGTAACTGCACCTCTTGGAAATACTGTCACTGGTTTTTATGGCTTATTA GGCGATGGGAAAACGGCTATTGTTGAAATGGCAGCAGCTTCTGGCCTTCACCTTGTTGCACCTGAGCATCGCAACCCATT ACATACGACAACCTATGGTACGGGTGAATTAATTAAAGCGGCATTAGATAAAGGCGTAAAACATATTATCGTGGGTATTG GTGGCAGTGCTACCAATGATGGCGGTATCGGTATGGCTCAAGCACTTGGTATTAAACTATTAGATAAAGAAGGCAATAAT CTGGCTTTTGGTGGCGGCTCATTAGCAAACTTAGTTACTATCGATGTGAGTAATAAAGATCCTCGATTGGATAGCATTCT ATTAGAAGTCGCTTGTGATGTAGATAATCCATTATGTGGCGCTAAAGGAGCCTCGTTTGTCTTTGGACCACAGAAAGGAG CTACCCCTAAAATAGTTAACCAACTTGATAATAATCTGAGTCATTACGCTGACATCATGAAGAAACAGCTAAATAAAGAC GTTAAAGATATAGCAGGCGCAGGTGCTGCTGGTGGTCTTGGTGCTGCATTGCTTGGGTTATTTGATGCCACCCTTCGCCC TGGTATCGAAATCGTAATGGACGCGGTTAATTTAAGTGATGTGTTATCTAATGCAGATTTAGTCATTACAGGTGAAGGTC GTATCGATAGCCAAACCATTCATGGTAAAACACCAATTGGGGTAGCCAGGACCGCAAAAAAATATAACTTACCTGTTATT GGCATTGCTGGTTGTTTATCTGACGATTGTGCTGTTGTTCATGATTACGGGATTGACGCGGTATTTAGTGTCGTCCCTCG TTCTGTATCATTAGAGATTGCACTAAAAGAAGCAACAATAAATGTTGAAAATACAGCAAGAAACGTAGCTTCTATTTATT CTATGAGTGCAAAAAAATAA
Upstream 100 bases:
>100_bases AAAACTAATCCCTTACGAATCAGCAGTCGGTCTAATGATCGCTACCGTCTCTACTCTTATTTTTGGCGTCTTTGGTTTAT TTGTTTAATAAGGCTTTATT
Downstream 100 bases:
>100_bases TGTAGTACCTCCAAATATACCCTTGTGGAATCAAATAATACGCAATAAAAAAGCAGCCAATTGGCTGCTTTTTTATTTAT AAACAAAGATTAAGCAGGTT
Product: glycerate kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 379; Mature: 379
Protein sequence:
>379_residues MKIVIAPDSYKESLTAMEVATAIEAGFKQVLPNAEYIKLPMADGGEGTVQSLIDATGGSIIECQVTAPLGNTVTGFYGLL GDGKTAIVEMAAASGLHLVAPEHRNPLHTTTYGTGELIKAALDKGVKHIIVGIGGSATNDGGIGMAQALGIKLLDKEGNN LAFGGGSLANLVTIDVSNKDPRLDSILLEVACDVDNPLCGAKGASFVFGPQKGATPKIVNQLDNNLSHYADIMKKQLNKD VKDIAGAGAAGGLGAALLGLFDATLRPGIEIVMDAVNLSDVLSNADLVITGEGRIDSQTIHGKTPIGVARTAKKYNLPVI GIAGCLSDDCAVVHDYGIDAVFSVVPRSVSLEIALKEATINVENTARNVASIYSMSAKK
Sequences:
>Translated_379_residues MKIVIAPDSYKESLTAMEVATAIEAGFKQVLPNAEYIKLPMADGGEGTVQSLIDATGGSIIECQVTAPLGNTVTGFYGLL GDGKTAIVEMAAASGLHLVAPEHRNPLHTTTYGTGELIKAALDKGVKHIIVGIGGSATNDGGIGMAQALGIKLLDKEGNN LAFGGGSLANLVTIDVSNKDPRLDSILLEVACDVDNPLCGAKGASFVFGPQKGATPKIVNQLDNNLSHYADIMKKQLNKD VKDIAGAGAAGGLGAALLGLFDATLRPGIEIVMDAVNLSDVLSNADLVITGEGRIDSQTIHGKTPIGVARTAKKYNLPVI GIAGCLSDDCAVVHDYGIDAVFSVVPRSVSLEIALKEATINVENTARNVASIYSMSAKK >Mature_379_residues MKIVIAPDSYKESLTAMEVATAIEAGFKQVLPNAEYIKLPMADGGEGTVQSLIDATGGSIIECQVTAPLGNTVTGFYGLL GDGKTAIVEMAAASGLHLVAPEHRNPLHTTTYGTGELIKAALDKGVKHIIVGIGGSATNDGGIGMAQALGIKLLDKEGNN LAFGGGSLANLVTIDVSNKDPRLDSILLEVACDVDNPLCGAKGASFVFGPQKGATPKIVNQLDNNLSHYADIMKKQLNKD VKDIAGAGAAGGLGAALLGLFDATLRPGIEIVMDAVNLSDVLSNADLVITGEGRIDSQTIHGKTPIGVARTAKKYNLPVI GIAGCLSDDCAVVHDYGIDAVFSVVPRSVSLEIALKEATINVENTARNVASIYSMSAKK
Specific function: Glyoxylate catabolism. [C]
COG id: COG1929
COG function: function code G; Glycerate kinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycerate kinase type-1 family [H]
Homologues:
Organism=Escherichia coli, GI1786724, Length=370, Percent_Identity=58.3783783783784, Blast_Score=417, Evalue=1e-118, Organism=Escherichia coli, GI145693185, Length=378, Percent_Identity=59.2592592592593, Blast_Score=416, Evalue=1e-117,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018193 - InterPro: IPR004381 [H]
Pfam domain/function: PF02595 Gly_kinase [H]
EC number: =2.7.1.31 [H]
Molecular weight: Translated: 39074; Mature: 39074
Theoretical pI: Translated: 5.06; Mature: 5.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIVIAPDSYKESLTAMEVATAIEAGFKQVLPNAEYIKLPMADGGEGTVQSLIDATGGSI CEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCCCE IECQVTAPLGNTVTGFYGLLGDGKTAIVEMAAASGLHLVAPEHRNPLHTTTYGTGELIKA EEEEEECCCCCCHHHHHHHCCCCHHHHHHHHHHCCEEEECCCCCCCCCEECCCHHHHHHH ALDKGVKHIIVGIGGSATNDGGIGMAQALGIKLLDKEGNNLAFGGGSLANLVTIDVSNKD HHHCCCEEEEEECCCCCCCCCCCCHHHHHCEEEEECCCCEEEECCCCEEEEEEEEECCCC PRLDSILLEVACDVDNPLCGAKGASFVFGPQKGATPKIVNQLDNNLSHYADIMKKQLNKD CCHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCH VKDIAGAGAAGGLGAALLGLFDATLRPGIEIVMDAVNLSDVLSNADLVITGEGRIDSQTI HHHHHCCCCCCHHHHHHHHHHHHHHCCCHHEEHHHHHHHHHHCCCCEEEECCCCCCCCEE HGKTPIGVARTAKKYNLPVIGIAGCLSDDCAVVHDYGIDAVFSVVPRSVSLEIALKEATI CCCCCCCHHHHHHHCCCCEEEEECCCCCCCEEEECCCHHHHHHHCCCCEEEEEEEEEEEE NVENTARNVASIYSMSAKK EHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MKIVIAPDSYKESLTAMEVATAIEAGFKQVLPNAEYIKLPMADGGEGTVQSLIDATGGSI CEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCCCE IECQVTAPLGNTVTGFYGLLGDGKTAIVEMAAASGLHLVAPEHRNPLHTTTYGTGELIKA EEEEEECCCCCCHHHHHHHCCCCHHHHHHHHHHCCEEEECCCCCCCCCEECCCHHHHHHH ALDKGVKHIIVGIGGSATNDGGIGMAQALGIKLLDKEGNNLAFGGGSLANLVTIDVSNKD HHHCCCEEEEEECCCCCCCCCCCCHHHHHCEEEEECCCCEEEECCCCEEEEEEEEECCCC PRLDSILLEVACDVDNPLCGAKGASFVFGPQKGATPKIVNQLDNNLSHYADIMKKQLNKD CCHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCH VKDIAGAGAAGGLGAALLGLFDATLRPGIEIVMDAVNLSDVLSNADLVITGEGRIDSQTI HHHHHCCCCCCHHHHHHHHHHHHHHCCCHHEEHHHHHHHHHHCCCCEEEECCCCCCCCEE HGKTPIGVARTAKKYNLPVIGIAGCLSDDCAVVHDYGIDAVFSVVPRSVSLEIALKEATI CCCCCCCHHHHHHHCCCCEEEEECCCCCCCEEEECCCHHHHHHHCCCCEEEEEEEEEEEE NVENTARNVASIYSMSAKK EHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]