| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is sfsA
Identifier: 209696018
GI number: 209696018
Start: 2820700
End: 2821407
Strand: Direct
Name: sfsA
Synonym: VSAL_I2604
Alternate gene names: 209696018
Gene position: 2820700-2821407 (Clockwise)
Preceding gene: 209696010
Following gene: 209696019
Centisome position: 84.83
GC content: 37.71
Gene sequence:
>708_bases ATGAAATTTGAAGCCAAATTAGAGTCTGGAATATTAATAAGACGTTATAAACGCTTTTTAACAGACATAAAGTTACCCGA TAAAAGTGAACGAACAATACATTGTGCGAACTCTGGAGCGATGACTGGCTGCGCAGAACCAGGCAATACGGTGTTTTTTT CAACATCCAGTAACCTAAAGCGCAAATACCCTAACAGTTGGGAGCTCAGCGTCACAGAACATAATCACACAATATGCGTT AATACCATCCGAGCAAATCAATTGGTTGTTGAAGCCATTATCAATAAAGAGATTGATGAGTTAGTTAATTACGCAGAGTT AAAAACGGAAGTAAAATATGGTTCAGAAAATAGCCGTATTGATATTTTTCTCAGTGCAGAAATGCTGCCTGACTGCTATA TTGAAGTGAAGAGTGTGACTCTATTGGATGAATCTGGGCAAGGCTATTTTCCTGACTCAGTCACAACAAGAGGACAAAAA CACCTTAGAGAACTGACTGAAATAGCGCAAAATGGACAAAAAGCCGTTTTATTTTTTGCTGTTTTGCATTCAGGTATTGA AAAAGTCTCTATCGCACACCATATAGACCAACAATATTATTCTTTATTATTAGAAGCGATAGAAAGTGGGGTCACTGTAC TTTGCTACCAAGCAGAGATGTCACCAACAGAGATGAAGATCGTACGCAAGCTACCTTTTAGTATTTAA
Upstream 100 bases:
>100_bases ATCAGTGATGGGATCACTCTTTCAATCGGCAACTGTGACAATGTTCTCGCCTTATGGCATTATCTCGAATTAAACCATTG TACAAAAAAACAGTAGTTAA
Downstream 100 bases:
>100_bases TTGCATTTAATGGCAATAAATACATTCTTTTGAAGAAAAGTGCTACGTTCTTGATACTAGATCTCAATTGGTGAAATCAA TATTTGATTGCCCCTTTTCT
Product: sugar fermentation stimulation protein A
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 235; Mature: 235
Protein sequence:
>235_residues MKFEAKLESGILIRRYKRFLTDIKLPDKSERTIHCANSGAMTGCAEPGNTVFFSTSSNLKRKYPNSWELSVTEHNHTICV NTIRANQLVVEAIINKEIDELVNYAELKTEVKYGSENSRIDIFLSAEMLPDCYIEVKSVTLLDESGQGYFPDSVTTRGQK HLRELTEIAQNGQKAVLFFAVLHSGIEKVSIAHHIDQQYYSLLLEAIESGVTVLCYQAEMSPTEMKIVRKLPFSI
Sequences:
>Translated_235_residues MKFEAKLESGILIRRYKRFLTDIKLPDKSERTIHCANSGAMTGCAEPGNTVFFSTSSNLKRKYPNSWELSVTEHNHTICV NTIRANQLVVEAIINKEIDELVNYAELKTEVKYGSENSRIDIFLSAEMLPDCYIEVKSVTLLDESGQGYFPDSVTTRGQK HLRELTEIAQNGQKAVLFFAVLHSGIEKVSIAHHIDQQYYSLLLEAIESGVTVLCYQAEMSPTEMKIVRKLPFSI >Mature_235_residues MKFEAKLESGILIRRYKRFLTDIKLPDKSERTIHCANSGAMTGCAEPGNTVFFSTSSNLKRKYPNSWELSVTEHNHTICV NTIRANQLVVEAIINKEIDELVNYAELKTEVKYGSENSRIDIFLSAEMLPDCYIEVKSVTLLDESGQGYFPDSVTTRGQK HLRELTEIAQNGQKAVLFFAVLHSGIEKVSIAHHIDQQYYSLLLEAIESGVTVLCYQAEMSPTEMKIVRKLPFSI
Specific function: Probable Regulatory Factor Involved In Maltose Metabolism. [C]
COG id: COG1489
COG function: function code R; DNA-binding protein, stimulates sugar fermentation
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sfsA family
Homologues:
Organism=Escherichia coli, GI1786340, Length=235, Percent_Identity=57.4468085106383, Blast_Score=287, Evalue=3e-79,
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): SFSA_ALISL (B6ELD6)
Other databases:
- EMBL: FM178379 - RefSeq: YP_002263948.1 - GeneID: 6988681 - GenomeReviews: FM178379_GR - KEGG: vsa:VSAL_I2604 - HOGENOM: HBG655520 - OMA: NTGSMLN - ProtClustDB: CLSK2396225 - HAMAP: MF_00095 - InterPro: IPR005224 - TIGRFAMs: TIGR00230
Pfam domain/function: PF03749 SfsA
EC number: NA
Molecular weight: Translated: 26570; Mature: 26570
Theoretical pI: Translated: 6.40; Mature: 6.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFEAKLESGILIRRYKRFLTDIKLPDKSERTIHCANSGAMTGCAEPGNTVFFSTSSNLK CCCCHHHHCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEECCCCHH RKYPNSWELSVTEHNHTICVNTIRANQLVVEAIINKEIDELVNYAELKTEVKYGSENSRI HCCCCCEEEEEEECCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE DIFLSAEMLPDCYIEVKSVTLLDESGQGYFPDSVTTRGQKHLRELTEIAQNGQKAVLFFA EEEEECCCCCCEEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHH VLHSGIEKVSIAHHIDQQYYSLLLEAIESGVTVLCYQAEMSPTEMKIVRKLPFSI HHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCC >Mature Secondary Structure MKFEAKLESGILIRRYKRFLTDIKLPDKSERTIHCANSGAMTGCAEPGNTVFFSTSSNLK CCCCHHHHCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEECCCCHH RKYPNSWELSVTEHNHTICVNTIRANQLVVEAIINKEIDELVNYAELKTEVKYGSENSRI HCCCCCEEEEEEECCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE DIFLSAEMLPDCYIEVKSVTLLDESGQGYFPDSVTTRGQKHLRELTEIAQNGQKAVLFFA EEEEECCCCCCEEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHH VLHSGIEKVSIAHHIDQQYYSLLLEAIESGVTVLCYQAEMSPTEMKIVRKLPFSI HHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA