Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209695811

Identifier: 209695811

GI number: 209695811

Start: 2555082

End: 2555522

Strand: Direct

Name: 209695811

Synonym: VSAL_I2386

Alternate gene names: NA

Gene position: 2555082-2555522 (Clockwise)

Preceding gene: 209695810

Following gene: 209695813

Centisome position: 76.84

GC content: 37.41

Gene sequence:

>441_bases
ATGGACGTCGTTGAGTTAGGATCGCAAACAAAACGTTACCGTTTGCTGGCTCTTTTCTGTAATTTATCGTTATTGATTTT
TGTCATGCTATGGCACAGTGTTATTTCCCCGCATCCTCAAATCAATCCTTATGGGCTGATGATTGCTTGGATGATACCGC
TGCTATTGCCATTAAAAGGCATTTTAGAAGGGAAGCCTTATACTCACGCATGGGCTAATTTTATATTAATGTTTTATTTT
CTTCATGGATTCACCTTATTATGGGTCGATGAAGGAGAGCGTTATTTGGCGGTAATAGAACTCATCCTTACCTCTGGAGC
GTTTATTGGAAACATTTATTACGCTCGTCTACGAGGTAAAGAGTTAGGTTTAAAACTTAAACTTTTATCGGAAGTTGAAA
AAATAGAAAAAGCCAGTTACGCAGAAAACAAACAAGATTAA

Upstream 100 bases:

>100_bases
TAATTGAACGCCCTATTGTTGTTCATAATAACCACGCTAAAATAGGTCGCCCACCGGAACAAGTTCTGGATATTTTATAG
CTACTAGTAAGGAAGTGAAC

Downstream 100 bases:

>100_bases
TCTGCATGTTCTCTCTTGCATTTATCGTCTGATAATTGAATAAAAAAGGTGGCCATAAGCCACCTTTTTTATTGAGTCAA
TATTATTTACTTCTTCAGTT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 146; Mature: 146

Protein sequence:

>146_residues
MDVVELGSQTKRYRLLALFCNLSLLIFVMLWHSVISPHPQINPYGLMIAWMIPLLLPLKGILEGKPYTHAWANFILMFYF
LHGFTLLWVDEGERYLAVIELILTSGAFIGNIYYARLRGKELGLKLKLLSEVEKIEKASYAENKQD

Sequences:

>Translated_146_residues
MDVVELGSQTKRYRLLALFCNLSLLIFVMLWHSVISPHPQINPYGLMIAWMIPLLLPLKGILEGKPYTHAWANFILMFYF
LHGFTLLWVDEGERYLAVIELILTSGAFIGNIYYARLRGKELGLKLKLLSEVEKIEKASYAENKQD
>Mature_146_residues
MDVVELGSQTKRYRLLALFCNLSLLIFVMLWHSVISPHPQINPYGLMIAWMIPLLLPLKGILEGKPYTHAWANFILMFYF
LHGFTLLWVDEGERYLAVIELILTSGAFIGNIYYARLRGKELGLKLKLLSEVEKIEKASYAENKQD

Specific function: Unknown

COG id: COG3308

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16846; Mature: 16846

Theoretical pI: Translated: 8.42; Mature: 8.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVVELGSQTKRYRLLALFCNLSLLIFVMLWHSVISPHPQINPYGLMIAWMIPLLLPLKG
CCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
ILEGKPYTHAWANFILMFYFLHGFTLLWVDEGERYLAVIELILTSGAFIGNIYYARLRGK
HHCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHCCCHHHHHHHEEECCH
ELGLKLKLLSEVEKIEKASYAENKQD
HHCHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MDVVELGSQTKRYRLLALFCNLSLLIFVMLWHSVISPHPQINPYGLMIAWMIPLLLPLKG
CCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
ILEGKPYTHAWANFILMFYFLHGFTLLWVDEGERYLAVIELILTSGAFIGNIYYARLRGK
HHCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHCCCHHHHHHHEEECCH
ELGLKLKLLSEVEKIEKASYAENKQD
HHCHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA