| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209695811
Identifier: 209695811
GI number: 209695811
Start: 2555082
End: 2555522
Strand: Direct
Name: 209695811
Synonym: VSAL_I2386
Alternate gene names: NA
Gene position: 2555082-2555522 (Clockwise)
Preceding gene: 209695810
Following gene: 209695813
Centisome position: 76.84
GC content: 37.41
Gene sequence:
>441_bases ATGGACGTCGTTGAGTTAGGATCGCAAACAAAACGTTACCGTTTGCTGGCTCTTTTCTGTAATTTATCGTTATTGATTTT TGTCATGCTATGGCACAGTGTTATTTCCCCGCATCCTCAAATCAATCCTTATGGGCTGATGATTGCTTGGATGATACCGC TGCTATTGCCATTAAAAGGCATTTTAGAAGGGAAGCCTTATACTCACGCATGGGCTAATTTTATATTAATGTTTTATTTT CTTCATGGATTCACCTTATTATGGGTCGATGAAGGAGAGCGTTATTTGGCGGTAATAGAACTCATCCTTACCTCTGGAGC GTTTATTGGAAACATTTATTACGCTCGTCTACGAGGTAAAGAGTTAGGTTTAAAACTTAAACTTTTATCGGAAGTTGAAA AAATAGAAAAAGCCAGTTACGCAGAAAACAAACAAGATTAA
Upstream 100 bases:
>100_bases TAATTGAACGCCCTATTGTTGTTCATAATAACCACGCTAAAATAGGTCGCCCACCGGAACAAGTTCTGGATATTTTATAG CTACTAGTAAGGAAGTGAAC
Downstream 100 bases:
>100_bases TCTGCATGTTCTCTCTTGCATTTATCGTCTGATAATTGAATAAAAAAGGTGGCCATAAGCCACCTTTTTTATTGAGTCAA TATTATTTACTTCTTCAGTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 146; Mature: 146
Protein sequence:
>146_residues MDVVELGSQTKRYRLLALFCNLSLLIFVMLWHSVISPHPQINPYGLMIAWMIPLLLPLKGILEGKPYTHAWANFILMFYF LHGFTLLWVDEGERYLAVIELILTSGAFIGNIYYARLRGKELGLKLKLLSEVEKIEKASYAENKQD
Sequences:
>Translated_146_residues MDVVELGSQTKRYRLLALFCNLSLLIFVMLWHSVISPHPQINPYGLMIAWMIPLLLPLKGILEGKPYTHAWANFILMFYF LHGFTLLWVDEGERYLAVIELILTSGAFIGNIYYARLRGKELGLKLKLLSEVEKIEKASYAENKQD >Mature_146_residues MDVVELGSQTKRYRLLALFCNLSLLIFVMLWHSVISPHPQINPYGLMIAWMIPLLLPLKGILEGKPYTHAWANFILMFYF LHGFTLLWVDEGERYLAVIELILTSGAFIGNIYYARLRGKELGLKLKLLSEVEKIEKASYAENKQD
Specific function: Unknown
COG id: COG3308
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16846; Mature: 16846
Theoretical pI: Translated: 8.42; Mature: 8.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDVVELGSQTKRYRLLALFCNLSLLIFVMLWHSVISPHPQINPYGLMIAWMIPLLLPLKG CCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH ILEGKPYTHAWANFILMFYFLHGFTLLWVDEGERYLAVIELILTSGAFIGNIYYARLRGK HHCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHCCCHHHHHHHEEECCH ELGLKLKLLSEVEKIEKASYAENKQD HHCHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MDVVELGSQTKRYRLLALFCNLSLLIFVMLWHSVISPHPQINPYGLMIAWMIPLLLPLKG CCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH ILEGKPYTHAWANFILMFYFLHGFTLLWVDEGERYLAVIELILTSGAFIGNIYYARLRGK HHCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHCCCHHHHHHHEEECCH ELGLKLKLLSEVEKIEKASYAENKQD HHCHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA