| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is yfgD [H]
Identifier: 209695810
GI number: 209695810
Start: 2554711
End: 2555061
Strand: Direct
Name: yfgD [H]
Synonym: VSAL_I2385
Alternate gene names: 209695810
Gene position: 2554711-2555061 (Clockwise)
Preceding gene: 209695809
Following gene: 209695811
Centisome position: 76.83
GC content: 35.61
Gene sequence:
>351_bases ATGTCTGTTGTTATTTATCACAACCAAAAATGCTCTAAAAGTCGTCAAACCTTGGCTTTATTAGAAGAAAAAGGAATCGT ACCAGAGGTCATAAAATACCTTGAACAAACACCAAGTATTGATGAGTTAAAAACACTGTTCTCTCAACTAGGGTTCAGTT CTGTTCGAGAGATGATGCGAACTAAAGAAGATATTTACAAAGAACTAAACTTAGGTGAAAACGCATTAAGTAATGAACAG TTATTTGAAGCGATGAACGCGAATCCAAAACTAATTGAACGCCCTATTGTTGTTCATAATAACCACGCTAAAATAGGTCG CCCACCGGAACAAGTTCTGGATATTTTATAG
Upstream 100 bases:
>100_bases GCTTAGATCAAGCTCGATATGATGCAAGAATAGATCAGTTACGCCTCTCTAGAGAAAGATTCAGCACGTTATAACGAAAG AAAAATAAAAAGGAAAACTT
Downstream 100 bases:
>100_bases CTACTAGTAAGGAAGTGAACATGGACGTCGTTGAGTTAGGATCGCAAACAAAACGTTACCGTTTGCTGGCTCTTTTCTGT AATTTATCGTTATTGATTTT
Product: arsenate reductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 116; Mature: 115
Protein sequence:
>116_residues MSVVIYHNQKCSKSRQTLALLEEKGIVPEVIKYLEQTPSIDELKTLFSQLGFSSVREMMRTKEDIYKELNLGENALSNEQ LFEAMNANPKLIERPIVVHNNHAKIGRPPEQVLDIL
Sequences:
>Translated_116_residues MSVVIYHNQKCSKSRQTLALLEEKGIVPEVIKYLEQTPSIDELKTLFSQLGFSSVREMMRTKEDIYKELNLGENALSNEQ LFEAMNANPKLIERPIVVHNNHAKIGRPPEQVLDIL >Mature_115_residues SVVIYHNQKCSKSRQTLALLEEKGIVPEVIKYLEQTPSIDELKTLFSQLGFSSVREMMRTKEDIYKELNLGENALSNEQL FEAMNANPKLIERPIVVHNNHAKIGRPPEQVLDIL
Specific function: Unknown
COG id: COG1393
COG function: function code P; Arsenate reductase and related proteins, glutaredoxin family
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ArsC family [H]
Homologues:
Organism=Escherichia coli, GI1788841, Length=114, Percent_Identity=59.6491228070175, Blast_Score=139, Evalue=4e-35, Organism=Escherichia coli, GI1789918, Length=115, Percent_Identity=40.8695652173913, Blast_Score=91, Evalue=2e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006659 - InterPro: IPR006660 - InterPro: IPR012336 - InterPro: IPR012335 [H]
Pfam domain/function: PF03960 ArsC [H]
EC number: NA
Molecular weight: Translated: 13292; Mature: 13160
Theoretical pI: Translated: 6.26; Mature: 6.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVVIYHNQKCSKSRQTLALLEEKGIVPEVIKYLEQTPSIDELKTLFSQLGFSSVREMMR CEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHH TKEDIYKELNLGENALSNEQLFEAMNANPKLIERPIVVHNNHAKIGRPPEQVLDIL HHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHCCCEEECCCCCCCCCHHHHHHCC >Mature Secondary Structure SVVIYHNQKCSKSRQTLALLEEKGIVPEVIKYLEQTPSIDELKTLFSQLGFSSVREMMR EEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHH TKEDIYKELNLGENALSNEQLFEAMNANPKLIERPIVVHNNHAKIGRPPEQVLDIL HHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHCCCEEECCCCCCCCCHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9205837; 9278503; 10493123 [H]