Click here to switch to the map view.

The map label for this gene is yfgC [C]

Identifier: 209695809

GI number: 209695809

Start: 2553230

End: 2554684

Strand: Direct

Name: yfgC [C]

Synonym: VSAL_I2384

Alternate gene names: 209695809

Gene position: 2553230-2554684 (Clockwise)

Preceding gene: 209695806

Following gene: 209695810

Centisome position: 76.79

GC content: 42.89

Gene sequence:

>1455_bases
ATGTTCAAATTAAAAAAGCTGGCCAGTAGTTTACTCATTGCCTCATTGCTAACAAGCTCACTACCTGCTAGTGCAAATAA
CGATTTAGATTTGCCTGAAATAGGAACCACAGCAGCGGGTACTCTGACCATAGATCAAGAACTGGTTTATGGTGATGCGT
ACATGCGGATGCTCCGTGCTAGCCAACCAGTCATTAATGATCCAGTATTAACTGAATATGTTCAAAATCTAGGCCACCGC
TTAGTTGCTAATGCAAGTGATGTCAAAACCCCTTTCCACTTCTTCTTAATCAATAATAGAGAAATTAACGCCTTTGCTTT
TTTTGGTGGTTATGTTGCGTTGCATTCAGGATTATTTCTATACGCACAATCGGAAAGCGAATTAGCCTCAGTGGTTGCTC
ACGAAATTGCGCATATTACACAGCGTCACCTTGCTCGAAGTATGGAAGATCAAGCTCGACGCTCACCAGCAACGATTGCA
GCACTTGTTGGCTCTTTATTATTGGCAATTGCAGCACCAGAAGCAGGCATTGCCGCGATTCATGCAACAACCGCTGGAGC
AATGCAAAGCTCAATTAACTATACAAGAAGCAATGAAAAAGAAGCCGACAGGTTTGGGATTGATACACTCGCAAAATCAG
GATTTGATGTAACGGCAATGCCACGATTTTTCTCACGATTAGCCGACCAATATCGATACGCAAGTACACCACCACCAATG
CTTCTAACTCACCCCTTACCCGCAGACCGAATAACAGACAGCCGAGCTAGAGCACAACAATACCCAATGCGCCGTGTAAA
CACATCCCTGCGATACCAACTTGCTCGCTCTCGTATCGTCGCTCGCTTTGCTGGTATTGATAGTAATGCCGCGCTTGATT
GGTTTTCTCGTAAATCAAAGTCGGCTAAAGTCGATCAAAAGACAGCCATCGAATACGGTAAAGCCTTAGTTTATATTGAT
TCAAACCAATATGATAAAGCCACACCAATAATGTCAACGTTACTCAAAAATGATCCTCTAAATACGTTTTATATTGATGC
AGCTACCGATTTAGATCTGTATACAAAGAAAAATGAACAGGCGATAAAACGCTTAGAAAATGGATTAATTCATCTGCCCA
ACAACCCAGTATTAATGATCAATTACGCCCATGCTTTATCTGAATCGGGGAAAACGCCTCAAGCGGTTCGAATTCTTCAA
CGCTACACTCATGACCACCCTAAAGATCCGACTGGGTGGCAATTACTCTCTAAAGCCTACTATGATGACGGCAGCTCCGA
TGGAGAATTAGCAGCAAGAGCTGAGGTTTATGCGCTTAAAGGCATGTGGAATAAAGCGTTAAGTAATTACACACAAGCAA
GCCAACTCGCCGAGTTGGGCAGCTTAGATCAAGCTCGATATGATGCAAGAATAGATCAGTTACGCCTCTCTAGAGAAAGA
TTCAGCACGTTATAA

Upstream 100 bases:

>100_bases
TTGCTACTCTTATAATATTAAGATAAGCAGCCTCCACTCTCATTACAGATATCCATCTCTTTCATAGTGGAATGTTATTA
AAAGGATTTGTGAATAATAC

Downstream 100 bases:

>100_bases
CGAAAGAAAAATAAAAAGGAAAACTTATGTCTGTTGTTATTTATCACAACCAAAAATGCTCTAAAAGTCGTCAAACCTTG
GCTTTATTAGAAGAAAAAGG

Product: peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 484; Mature: 484

Protein sequence:

>484_residues
MFKLKKLASSLLIASLLTSSLPASANNDLDLPEIGTTAAGTLTIDQELVYGDAYMRMLRASQPVINDPVLTEYVQNLGHR
LVANASDVKTPFHFFLINNREINAFAFFGGYVALHSGLFLYAQSESELASVVAHEIAHITQRHLARSMEDQARRSPATIA
ALVGSLLLAIAAPEAGIAAIHATTAGAMQSSINYTRSNEKEADRFGIDTLAKSGFDVTAMPRFFSRLADQYRYASTPPPM
LLTHPLPADRITDSRARAQQYPMRRVNTSLRYQLARSRIVARFAGIDSNAALDWFSRKSKSAKVDQKTAIEYGKALVYID
SNQYDKATPIMSTLLKNDPLNTFYIDAATDLDLYTKKNEQAIKRLENGLIHLPNNPVLMINYAHALSESGKTPQAVRILQ
RYTHDHPKDPTGWQLLSKAYYDDGSSDGELAARAEVYALKGMWNKALSNYTQASQLAELGSLDQARYDARIDQLRLSRER
FSTL

Sequences:

>Translated_484_residues
MFKLKKLASSLLIASLLTSSLPASANNDLDLPEIGTTAAGTLTIDQELVYGDAYMRMLRASQPVINDPVLTEYVQNLGHR
LVANASDVKTPFHFFLINNREINAFAFFGGYVALHSGLFLYAQSESELASVVAHEIAHITQRHLARSMEDQARRSPATIA
ALVGSLLLAIAAPEAGIAAIHATTAGAMQSSINYTRSNEKEADRFGIDTLAKSGFDVTAMPRFFSRLADQYRYASTPPPM
LLTHPLPADRITDSRARAQQYPMRRVNTSLRYQLARSRIVARFAGIDSNAALDWFSRKSKSAKVDQKTAIEYGKALVYID
SNQYDKATPIMSTLLKNDPLNTFYIDAATDLDLYTKKNEQAIKRLENGLIHLPNNPVLMINYAHALSESGKTPQAVRILQ
RYTHDHPKDPTGWQLLSKAYYDDGSSDGELAARAEVYALKGMWNKALSNYTQASQLAELGSLDQARYDARIDQLRLSRER
FSTL
>Mature_484_residues
MFKLKKLASSLLIASLLTSSLPASANNDLDLPEIGTTAAGTLTIDQELVYGDAYMRMLRASQPVINDPVLTEYVQNLGHR
LVANASDVKTPFHFFLINNREINAFAFFGGYVALHSGLFLYAQSESELASVVAHEIAHITQRHLARSMEDQARRSPATIA
ALVGSLLLAIAAPEAGIAAIHATTAGAMQSSINYTRSNEKEADRFGIDTLAKSGFDVTAMPRFFSRLADQYRYASTPPPM
LLTHPLPADRITDSRARAQQYPMRRVNTSLRYQLARSRIVARFAGIDSNAALDWFSRKSKSAKVDQKTAIEYGKALVYID
SNQYDKATPIMSTLLKNDPLNTFYIDAATDLDLYTKKNEQAIKRLENGLIHLPNNPVLMINYAHALSESGKTPQAVRILQ
RYTHDHPKDPTGWQLLSKAYYDDGSSDGELAARAEVYALKGMWNKALSNYTQASQLAELGSLDQARYDARIDQLRLSRER
FSTL

Specific function: Unknown

COG id: COG4783

COG function: function code R; Putative Zn-dependent protease, contains TPR repeats

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 4 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788840, Length=483, Percent_Identity=50.1035196687371, Blast_Score=448, Evalue=1e-127,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001915
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: PF01435 Peptidase_M48 [H]

EC number: NA

Molecular weight: Translated: 53672; Mature: 53672

Theoretical pI: Translated: 9.23; Mature: 9.23

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKLKKLASSLLIASLLTSSLPASANNDLDLPEIGTTAAGTLTIDQELVYGDAYMRMLRA
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHH
SQPVINDPVLTEYVQNLGHRLVANASDVKTPFHFFLINNREINAFAFFGGYVALHSGLFL
CCCCCCCHHHHHHHHHHHHHHHCCCHHCCCCEEEEEEECCCEEEEEHHHHHHHHHCCEEE
YAQSESELASVVAHEIAHITQRHLARSMEDQARRSPATIAALVGSLLLAIAAPEAGIAAI
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCEEEE
HATTAGAMQSSINYTRSNEKEADRFGIDTLAKSGFDVTAMPRFFSRLADQYRYASTPPPM
EHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCE
LLTHPLPADRITDSRARAQQYPMRRVNTSLRYQLARSRIVARFAGIDSNAALDWFSRKSK
EEECCCCHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCC
SAKVDQKTAIEYGKALVYIDSNQYDKATPIMSTLLKNDPLNTFYIDAATDLDLYTKKNEQ
CCCCHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEECCCCCHHHCCCCHH
AIKRLENGLIHLPNNPVLMINYAHALSESGKTPQAVRILQRYTHDHPKDPTGWQLLSKAY
HHHHHHCCEEECCCCCEEEEEEHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHH
YDDGSSDGELAARAEVYALKGMWNKALSNYTQASQLAELGSLDQARYDARIDQLRLSRER
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
FSTL
HCCC
>Mature Secondary Structure
MFKLKKLASSLLIASLLTSSLPASANNDLDLPEIGTTAAGTLTIDQELVYGDAYMRMLRA
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHH
SQPVINDPVLTEYVQNLGHRLVANASDVKTPFHFFLINNREINAFAFFGGYVALHSGLFL
CCCCCCCHHHHHHHHHHHHHHHCCCHHCCCCEEEEEEECCCEEEEEHHHHHHHHHCCEEE
YAQSESELASVVAHEIAHITQRHLARSMEDQARRSPATIAALVGSLLLAIAAPEAGIAAI
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCEEEE
HATTAGAMQSSINYTRSNEKEADRFGIDTLAKSGFDVTAMPRFFSRLADQYRYASTPPPM
EHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCE
LLTHPLPADRITDSRARAQQYPMRRVNTSLRYQLARSRIVARFAGIDSNAALDWFSRKSK
EEECCCCHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCC
SAKVDQKTAIEYGKALVYIDSNQYDKATPIMSTLLKNDPLNTFYIDAATDLDLYTKKNEQ
CCCCHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEECCCCCHHHCCCCHH
AIKRLENGLIHLPNNPVLMINYAHALSESGKTPQAVRILQRYTHDHPKDPTGWQLLSKAY
HHHHHHCCEEECCCCCEEEEEEHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHH
YDDGSSDGELAARAEVYALKGMWNKALSNYTQASQLAELGSLDQARYDARIDQLRLSRER
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
FSTL
HCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]