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The map label for this gene is ccmH [H]

Identifier: 209695705

GI number: 209695705

Start: 2448561

End: 2449775

Strand: Reverse

Name: ccmH [H]

Synonym: VSAL_I2273

Alternate gene names: 209695705

Gene position: 2449775-2448561 (Counterclockwise)

Preceding gene: 209695706

Following gene: 209695704

Centisome position: 73.67

GC content: 39.59

Gene sequence:

>1215_bases
ATGAGTTTGTTTTGGATTTCAACCTTAGCCCTAATTTTTGTTGGTATCGCATTCATCGTTCTTCCGCTATGGAAAGCTAA
AGCGCAAGATGATGATGCTCGCCGAGATGAATTGAACAAAGCGTTCTATAAAGATCGCTTACTAGAGTTAGAAGAAGAAG
ACGCTGAAGGTCTTGTGAACAATCAAGAAGAGTTGATCACAGAGCTTAAACAATCATTACTTGATGATATTCCAGCGCCA
GAGAAAGCACAGCAAGACAGTATGGATGCAAAATTATTCATCTTGCCATCTATTCTTGTGTTTGTTGCTATTTCTTACGG
TTTTTACTTTAAGTTCGGTAATATCGATAAAATTGAAAAATGGCATGAAGTTTCTGAACGTTTACCTGAGTTATCAAAAC
AATTGATGAATCCTGAAGGTGTTTCGTTAAGTGATTCTGAAATGATCGATTTAACGTTAGGACTTCGTACTAAATTGTAT
GAAGAACCAAACGATGCAATGGGTTGGTTGTTATTAGGTCGTATTGGTATGGCTAACCGAGATATTGATACTTCTGTTGG
AGCAATGCAAAAAGCTTATAAGCTTAAGCCTGACGATGTTGAAATTAAATTGGGTTATGCGCAATCATTAATGCTTTCTG
GTGACGATGCGAAAGCAGAGCAGTCGAAGACATTACTTCGTCAAGTTCTGCGTCAAGACTCAACCAATCTACGTGCATTA
TCATTATTAGCGTTCAGTGCGTTTGAGCGTCAAGATTATAAAGGTGCAGTATCTGCTTGGAAAGCGATGCAAATGCTGAT
TGGTCCTGATGATTCACGTTATGAAATGCTAGTACGCAGTATTGAACGAGCAAAATCTAAGATGAACCCAGAAGCGACTT
TAGATAAGCAAGTTCCTATCACTGTGAATTTAGGCTCTAATGTGACGTTACCTTCACAAGGTGTCGTGATTGTTTCAATT
CACCCTGCGGATGGTTCTGCTATGCCTGTTGCAGCGGCTCGTATCCCACTCAGCCGTTTTCCTCTGAAAATCATGATGTC
AGATGACAATAATATGATTGAACAGCGTAAGCTGTCGGATATGCCTGATTTTATCGTTCGTGCACGTATTGACCAAGATG
GCAATGTGTCTACGAAAGAAGGAGATTGGTATGGTGAGAGCGCAGTCAGCACATTAGGAAAGAATGTATCGCTTGATATT
GATAAGCAATACTAA

Upstream 100 bases:

>100_bases
AAACCGTAACTGAAGACAATTCAGAAGAGTGGGATAACGAACATGAAGATCGTTTGAACGCATTACTAGATGACACTAAA
GAAGATGGGAAGGTAAACAA

Downstream 100 bases:

>100_bases
TACCTTTTAGCAAATGTCATACTATGACGGGCAGAAGCATTGAGCTTCTGCCCGTTTTTTTAATGACTATAATTGTATAA
CTATAATAATAAATAAAGAG

Product: cytochrome C biogenesis protein precursor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 404; Mature: 403

Protein sequence:

>404_residues
MSLFWISTLALIFVGIAFIVLPLWKAKAQDDDARRDELNKAFYKDRLLELEEEDAEGLVNNQEELITELKQSLLDDIPAP
EKAQQDSMDAKLFILPSILVFVAISYGFYFKFGNIDKIEKWHEVSERLPELSKQLMNPEGVSLSDSEMIDLTLGLRTKLY
EEPNDAMGWLLLGRIGMANRDIDTSVGAMQKAYKLKPDDVEIKLGYAQSLMLSGDDAKAEQSKTLLRQVLRQDSTNLRAL
SLLAFSAFERQDYKGAVSAWKAMQMLIGPDDSRYEMLVRSIERAKSKMNPEATLDKQVPITVNLGSNVTLPSQGVVIVSI
HPADGSAMPVAAARIPLSRFPLKIMMSDDNNMIEQRKLSDMPDFIVRARIDQDGNVSTKEGDWYGESAVSTLGKNVSLDI
DKQY

Sequences:

>Translated_404_residues
MSLFWISTLALIFVGIAFIVLPLWKAKAQDDDARRDELNKAFYKDRLLELEEEDAEGLVNNQEELITELKQSLLDDIPAP
EKAQQDSMDAKLFILPSILVFVAISYGFYFKFGNIDKIEKWHEVSERLPELSKQLMNPEGVSLSDSEMIDLTLGLRTKLY
EEPNDAMGWLLLGRIGMANRDIDTSVGAMQKAYKLKPDDVEIKLGYAQSLMLSGDDAKAEQSKTLLRQVLRQDSTNLRAL
SLLAFSAFERQDYKGAVSAWKAMQMLIGPDDSRYEMLVRSIERAKSKMNPEATLDKQVPITVNLGSNVTLPSQGVVIVSI
HPADGSAMPVAAARIPLSRFPLKIMMSDDNNMIEQRKLSDMPDFIVRARIDQDGNVSTKEGDWYGESAVSTLGKNVSLDI
DKQY
>Mature_403_residues
SLFWISTLALIFVGIAFIVLPLWKAKAQDDDARRDELNKAFYKDRLLELEEEDAEGLVNNQEELITELKQSLLDDIPAPE
KAQQDSMDAKLFILPSILVFVAISYGFYFKFGNIDKIEKWHEVSERLPELSKQLMNPEGVSLSDSEMIDLTLGLRTKLYE
EPNDAMGWLLLGRIGMANRDIDTSVGAMQKAYKLKPDDVEIKLGYAQSLMLSGDDAKAEQSKTLLRQVLRQDSTNLRALS
LLAFSAFERQDYKGAVSAWKAMQMLIGPDDSRYEMLVRSIERAKSKMNPEATLDKQVPITVNLGSNVTLPSQGVVIVSIH
PADGSAMPVAAARIPLSRFPLKIMMSDDNNMIEQRKLSDMPDFIVRARIDQDGNVSTKEGDWYGESAVSTLGKNVSLDID
KQY

Specific function: May be required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG4235

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=213, Percent_Identity=34.7417840375587, Blast_Score=145, Evalue=3e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616
- InterPro:   IPR017560
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 45323; Mature: 45191

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: PS50005 TPR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLFWISTLALIFVGIAFIVLPLWKAKAQDDDARRDELNKAFYKDRLLELEEEDAEGLVN
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCC
NQEELITELKQSLLDDIPAPEKAQQDSMDAKLFILPSILVFVAISYGFYFKFGNIDKIEK
CHHHHHHHHHHHHHHCCCCCCCHHHCCCCCEEHHHHHHHHHHHHHHHHEEEECCHHHHHH
WHEVSERLPELSKQLMNPEGVSLSDSEMIDLTLGLRTKLYEEPNDAMGWLLLGRIGMANR
HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECHHHHHHCCCCHHHHHHHHHHCCCCCC
DIDTSVGAMQKAYKLKPDDVEIKLGYAQSLMLSGDDAKAEQSKTLLRQVLRQDSTNLRAL
CCCHHHHHHHHHHCCCCCCEEEEECCHHEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHH
SLLAFSAFERQDYKGAVSAWKAMQMLIGPDDSRYEMLVRSIERAKSKMNPEATLDKQVPI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCE
TVNLGSNVTLPSQGVVIVSIHPADGSAMPVAAARIPLSRFPLKIMMSDDNNMIEQRKLSD
EEECCCCEECCCCCEEEEEEECCCCCCCCHHHHHCCHHHCCEEEEECCCCCHHHHHHHCC
MPDFIVRARIDQDGNVSTKEGDWYGESAVSTLGKNVSLDIDKQY
CHHHHHEEECCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCC
>Mature Secondary Structure 
SLFWISTLALIFVGIAFIVLPLWKAKAQDDDARRDELNKAFYKDRLLELEEEDAEGLVN
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCC
NQEELITELKQSLLDDIPAPEKAQQDSMDAKLFILPSILVFVAISYGFYFKFGNIDKIEK
CHHHHHHHHHHHHHHCCCCCCCHHHCCCCCEEHHHHHHHHHHHHHHHHEEEECCHHHHHH
WHEVSERLPELSKQLMNPEGVSLSDSEMIDLTLGLRTKLYEEPNDAMGWLLLGRIGMANR
HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECHHHHHHCCCCHHHHHHHHHHCCCCCC
DIDTSVGAMQKAYKLKPDDVEIKLGYAQSLMLSGDDAKAEQSKTLLRQVLRQDSTNLRAL
CCCHHHHHHHHHHCCCCCCEEEEECCHHEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHH
SLLAFSAFERQDYKGAVSAWKAMQMLIGPDDSRYEMLVRSIERAKSKMNPEATLDKQVPI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCE
TVNLGSNVTLPSQGVVIVSIHPADGSAMPVAAARIPLSRFPLKIMMSDDNNMIEQRKLSD
EEECCCCEECCCCCEEEEEEECCCCCCCCHHHHHCCHHHCCEEEEECCCCCHHHHHHHCC
MPDFIVRARIDQDGNVSTKEGDWYGESAVSTLGKNVSLDIDKQY
CHHHHHEEECCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]