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The map label for this gene is ccmH [H]

Identifier: 209695706

GI number: 209695706

Start: 2449772

End: 2450278

Strand: Reverse

Name: ccmH [H]

Synonym: VSAL_I2274

Alternate gene names: 209695706

Gene position: 2450278-2449772 (Counterclockwise)

Preceding gene: 209695707

Following gene: 209695705

Centisome position: 73.69

GC content: 38.46

Gene sequence:

>507_bases
ATGATATTACGTAAATTGAGTCTTCGTCTTGCTGCTATTCTTGCGTTGAGCTTTTTTGCTGCTCAAGCAAGTTATGCCAC
TATCGATTTGTATAAATTTGATTCACCAGAACAAGAACAGCAATTTAAAGAATTAGGGCAAACCTTGCGTTGCCCTAAAT
GTCAGAACAACAACATTGCTGATTCAAGTGCTGAGCTTGCTCAAGACATGCGTCACAAAGTGTATGAAATGACCAAGCAA
GGTAAATCTGATGATGAGATCGTTTCTTATATGATTGATCGTTACGGTAACTTTGTTACTTATGATCCACCGCTAACTGC
TGGTACGCTTGTTTTATGGTTAGGTCCATTGGCTGTATTAGTGTTTGGATTTGGTTTCATTGTACTTCGTAGCCGTAAAA
GCAAAACCGTAACTGAAGACAATTCAGAAGAGTGGGATAACGAACATGAAGATCGTTTGAACGCATTACTAGATGACACT
AAAGAAGATGGGAAGGTAAACAAATGA

Upstream 100 bases:

>100_bases
TCGTTCGCTATCGTCACGTTGGTGATGTAAATGATCGTAATTGGAATGAGAAACTAAAACCAATGTACGATCAACTAGTT
GCGGAGTCTAAATAATGAAG

Downstream 100 bases:

>100_bases
GTTTGTTTTGGATTTCAACCTTAGCCCTAATTTTTGTTGGTATCGCATTCATCGTTCTTCCGCTATGGAAAGCTAAAGCG
CAAGATGATGATGCTCGCCG

Product: cytochrome C biogenesis protein CcmH precursor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 168; Mature: 168

Protein sequence:

>168_residues
MILRKLSLRLAAILALSFFAAQASYATIDLYKFDSPEQEQQFKELGQTLRCPKCQNNNIADSSAELAQDMRHKVYEMTKQ
GKSDDEIVSYMIDRYGNFVTYDPPLTAGTLVLWLGPLAVLVFGFGFIVLRSRKSKTVTEDNSEEWDNEHEDRLNALLDDT
KEDGKVNK

Sequences:

>Translated_168_residues
MILRKLSLRLAAILALSFFAAQASYATIDLYKFDSPEQEQQFKELGQTLRCPKCQNNNIADSSAELAQDMRHKVYEMTKQ
GKSDDEIVSYMIDRYGNFVTYDPPLTAGTLVLWLGPLAVLVFGFGFIVLRSRKSKTVTEDNSEEWDNEHEDRLNALLDDT
KEDGKVNK
>Mature_168_residues
MILRKLSLRLAAILALSFFAAQASYATIDLYKFDSPEQEQQFKELGQTLRCPKCQNNNIADSSAELAQDMRHKVYEMTKQ
GKSDDEIVSYMIDRYGNFVTYDPPLTAGTLVLWLGPLAVLVFGFGFIVLRSRKSKTVTEDNSEEWDNEHEDRLNALLDDT
KEDGKVNK

Specific function: May be required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG3088

COG function: function code O; Uncharacterized protein involved in biosynthesis of c-type cytochromes

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=113, Percent_Identity=52.212389380531, Blast_Score=134, Evalue=4e-33,
Organism=Escherichia coli, GI1790512, Length=91, Percent_Identity=45.0549450549451, Blast_Score=92, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616
- InterPro:   IPR017560
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 19120; Mature: 19120

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILRKLSLRLAAILALSFFAAQASYATIDLYKFDSPEQEQQFKELGQTLRCPKCQNNNIA
CCHHHHHHHHHHHHHHHHHHHHCCHHEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCC
DSSAELAQDMRHKVYEMTKQGKSDDEIVSYMIDRYGNFVTYDPPLTAGTLVLWLGPLAVL
CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHH
VFGFGFIVLRSRKSKTVTEDNSEEWDNEHEDRLNALLDDTKEDGKVNK
HHHHHHHHHHCCCCCCCCCCCCHHCCCHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MILRKLSLRLAAILALSFFAAQASYATIDLYKFDSPEQEQQFKELGQTLRCPKCQNNNIA
CCHHHHHHHHHHHHHHHHHHHHCCHHEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCC
DSSAELAQDMRHKVYEMTKQGKSDDEIVSYMIDRYGNFVTYDPPLTAGTLVLWLGPLAVL
CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHH
VFGFGFIVLRSRKSKTVTEDNSEEWDNEHEDRLNALLDDTKEDGKVNK
HHHHHHHHHHCCCCCCCCCCCCHHCCCHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]