| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is fhs
Identifier: 209695622
GI number: 209695622
Start: 2345262
End: 2346926
Strand: Reverse
Name: fhs
Synonym: VSAL_I2184
Alternate gene names: 209695622
Gene position: 2346926-2345262 (Counterclockwise)
Preceding gene: 209695626
Following gene: 209695621
Centisome position: 70.58
GC content: 42.88
Gene sequence:
>1665_bases ATGAAAAGCGATATTGAGATCTGCCAAACTGCGACACTTATAAGAATGAAAACGATTGCGTCTAACTTAGGGCTGCATGA TGATGACATTACGCCACAAGGTCGCTATAAAGCGAAAGTCAATATTGATGCCTTAAAACACCTTGAAGATAAACCAAGTG GAAAACTTATTTTGGTTACCGCAATCACTCCAACGCCTTTAGGGGAAGGAAAAACGGTAACAACCATAGGATTAGCACAA GGCTTAGCTAAATTAGGGGAATCCGTCAGTGCTTGTATTCGTCAACCCTCAATGGGTCCCGTTTTTGGGGTAAAAGGCGG TGCCGCGGGTGGTGGTTATAGCCAAGTCGCTCCTATGGAAGAATTAAACCTACATTTAACAGGTGATATCCATGCAATAA CGGCCGCACATAACCTCGCTTCCGCCGCTATTGACGCACGTATTTATCACGAACAACGTTTGGGTTATAACATTTTTTCA GAAAAGAATGATCTCCCCGCATTACGTATTGATCCAACCCAAGTGGTTTGGAAACGAGTGATGGACCATAATGACCGTGC TCTACGCATGGTGACCATCGGAAAGAATGAAGACAATAAAACCATTAATGGTTATGAACGCGAAGATGGTTTCGATATAA CTGCCGCTTCAGAATTAATGGCCATTCTCGCTTTAGCCACTGACCTTCAAGATCTTCGTCAACGTATCGGTCGCATTGTT GTTGCTTACAACCTTGATGGACTGCCTATCACCACAGAAGACTTGCAAGTGGCTGGCGCAATGACAGTCACAATGAAATT CGCAATCAATCCAACGTTAATGCAAACACTTGAAGGCGTTCCAACGTTCGTTCATTCTGGGCCATTCGCAAACATCGCTC ATGGTAACTCGTCGATTATTGCTGATAACATCGCCTTAAAATTGACCGATTATACCGTGTTAGTGGCCACATTACGTGGA ATAAAAGCAAATTCGGGATTGTTTCCTCTATCATCAGGTCAATCCTTACCTAAAGCACTCTTTGTACCAAATCAAGAGGC ATTAATTGCAGGATTAGATAATTTACATTGGCACATCAAAAACTGTGCTAAATATGGGTTGCCTGTTGTTGTTGCCATAA ATCGATTCCCTGAAGACACTCAAGAAGAGCTCGATTTTTTAGCTGATTGGGTTACGAGTCAGTCTTCTGAACTAAACCTT GATGTTGCCATTAGTGAAGCATTTGGAAAAGGAGGCGAAGGCACTCGCGAACTCGCCCAAAAAGTGCTAATCGCATGCGC ACAAGAAACAGAGTTTACGCCACTTTATACTCCAGACATGAGTTTACTAGACAAATTAACCGCTGTAGCCATAAAAGGAT ATGGCGCTGAACGCCTTGAACTTTCAGAAAAAGCACAGCAACAACTCGCTATGTTTGAACAGTTAGGCTATCAACACTTA TCAGTATGCATGGCAAAAACACCGGCATCGATATCGACTGATGGCAACATTAAAGGCGCTCCAACTGACTTTATTGTACC GATTCGTGAATTACGATTGTGTGCTGGTGCAGGCTTTGTGTATGCCTTATGTGGCAACGTAATGACAATGCCTGGCTTGC CTGAAAAACCCGCATTCATGAATTTAGATATTGATAGTAATGGAAACATCACAGGGCTAAGCTAA
Upstream 100 bases:
>100_bases ATTATTTTTAGGTAATTCATTCTGTCTCCCCCTATTTATGTGGTATAAAACAGGCGCTTCTTTTCTGGTGTTTAACTCTT TCCTAAAGGTTCCCGTTATT
Downstream 100 bases:
>100_bases GATCACATTACTTAATGTAGATCATGTTCTATGTGTTACATTTACTGTTAATCTAGCTTCAACTTTTTATATAAATTTAA ATAATAATTTTGAGGTTATC
Product: formate--tetrahydrofolate ligase
Products: NA
Alternate protein names: Formyltetrahydrofolate synthetase; FHS; FTHFS
Number of amino acids: Translated: 554; Mature: 554
Protein sequence:
>554_residues MKSDIEICQTATLIRMKTIASNLGLHDDDITPQGRYKAKVNIDALKHLEDKPSGKLILVTAITPTPLGEGKTVTTIGLAQ GLAKLGESVSACIRQPSMGPVFGVKGGAAGGGYSQVAPMEELNLHLTGDIHAITAAHNLASAAIDARIYHEQRLGYNIFS EKNDLPALRIDPTQVVWKRVMDHNDRALRMVTIGKNEDNKTINGYEREDGFDITAASELMAILALATDLQDLRQRIGRIV VAYNLDGLPITTEDLQVAGAMTVTMKFAINPTLMQTLEGVPTFVHSGPFANIAHGNSSIIADNIALKLTDYTVLVATLRG IKANSGLFPLSSGQSLPKALFVPNQEALIAGLDNLHWHIKNCAKYGLPVVVAINRFPEDTQEELDFLADWVTSQSSELNL DVAISEAFGKGGEGTRELAQKVLIACAQETEFTPLYTPDMSLLDKLTAVAIKGYGAERLELSEKAQQQLAMFEQLGYQHL SVCMAKTPASISTDGNIKGAPTDFIVPIRELRLCAGAGFVYALCGNVMTMPGLPEKPAFMNLDIDSNGNITGLS
Sequences:
>Translated_554_residues MKSDIEICQTATLIRMKTIASNLGLHDDDITPQGRYKAKVNIDALKHLEDKPSGKLILVTAITPTPLGEGKTVTTIGLAQ GLAKLGESVSACIRQPSMGPVFGVKGGAAGGGYSQVAPMEELNLHLTGDIHAITAAHNLASAAIDARIYHEQRLGYNIFS EKNDLPALRIDPTQVVWKRVMDHNDRALRMVTIGKNEDNKTINGYEREDGFDITAASELMAILALATDLQDLRQRIGRIV VAYNLDGLPITTEDLQVAGAMTVTMKFAINPTLMQTLEGVPTFVHSGPFANIAHGNSSIIADNIALKLTDYTVLVATLRG IKANSGLFPLSSGQSLPKALFVPNQEALIAGLDNLHWHIKNCAKYGLPVVVAINRFPEDTQEELDFLADWVTSQSSELNL DVAISEAFGKGGEGTRELAQKVLIACAQETEFTPLYTPDMSLLDKLTAVAIKGYGAERLELSEKAQQQLAMFEQLGYQHL SVCMAKTPASISTDGNIKGAPTDFIVPIRELRLCAGAGFVYALCGNVMTMPGLPEKPAFMNLDIDSNGNITGLS >Mature_554_residues MKSDIEICQTATLIRMKTIASNLGLHDDDITPQGRYKAKVNIDALKHLEDKPSGKLILVTAITPTPLGEGKTVTTIGLAQ GLAKLGESVSACIRQPSMGPVFGVKGGAAGGGYSQVAPMEELNLHLTGDIHAITAAHNLASAAIDARIYHEQRLGYNIFS EKNDLPALRIDPTQVVWKRVMDHNDRALRMVTIGKNEDNKTINGYEREDGFDITAASELMAILALATDLQDLRQRIGRIV VAYNLDGLPITTEDLQVAGAMTVTMKFAINPTLMQTLEGVPTFVHSGPFANIAHGNSSIIADNIALKLTDYTVLVATLRG IKANSGLFPLSSGQSLPKALFVPNQEALIAGLDNLHWHIKNCAKYGLPVVVAINRFPEDTQEELDFLADWVTSQSSELNL DVAISEAFGKGGEGTRELAQKVLIACAQETEFTPLYTPDMSLLDKLTAVAIKGYGAERLELSEKAQQQLAMFEQLGYQHL SVCMAKTPASISTDGNIKGAPTDFIVPIRELRLCAGAGFVYALCGNVMTMPGLPEKPAFMNLDIDSNGNITGLS
Specific function: Unknown
COG id: COG2759
COG function: function code F; Formyltetrahydrofolate synthetase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the formate--tetrahydrofolate ligase family
Homologues:
Organism=Homo sapiens, GI222136639, Length=614, Percent_Identity=44.9511400651466, Blast_Score=462, Evalue=1e-130, Organism=Homo sapiens, GI36796743, Length=615, Percent_Identity=42.9268292682927, Blast_Score=435, Evalue=1e-122, Organism=Homo sapiens, GI310124614, Length=90, Percent_Identity=40, Blast_Score=79, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17568737, Length=619, Percent_Identity=43.4571890145396, Blast_Score=436, Evalue=1e-122, Organism=Caenorhabditis elegans, GI17568739, Length=619, Percent_Identity=43.4571890145396, Blast_Score=436, Evalue=1e-122, Organism=Saccharomyces cerevisiae, GI6319558, Length=635, Percent_Identity=40.4724409448819, Blast_Score=424, Evalue=1e-119, Organism=Saccharomyces cerevisiae, GI6321643, Length=630, Percent_Identity=40.9523809523809, Blast_Score=420, Evalue=1e-118, Organism=Drosophila melanogaster, GI62472483, Length=624, Percent_Identity=39.2628205128205, Blast_Score=412, Evalue=1e-115, Organism=Drosophila melanogaster, GI45551871, Length=624, Percent_Identity=39.2628205128205, Blast_Score=412, Evalue=1e-115, Organism=Drosophila melanogaster, GI24645718, Length=624, Percent_Identity=39.2628205128205, Blast_Score=412, Evalue=1e-115, Organism=Drosophila melanogaster, GI17137370, Length=624, Percent_Identity=39.2628205128205, Blast_Score=412, Evalue=1e-115,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): FTHS_ALISL (B6EIJ9)
Other databases:
- EMBL: FM178379 - RefSeq: YP_002263551.1 - GeneID: 6987644 - GenomeReviews: FM178379_GR - KEGG: vsa:VSAL_I2184 - HOGENOM: HBG677721 - OMA: DTERELS - ProtClustDB: PRK13506 - HAMAP: MF_01543 - InterPro: IPR000559 - InterPro: IPR020628
Pfam domain/function: PF01268 FTHFS
EC number: =6.3.4.3
Molecular weight: Translated: 59637; Mature: 59637
Theoretical pI: Translated: 5.22; Mature: 5.22
Prosite motif: PS00721 FTHFS_1; PS00722 FTHFS_2; PS00173 XYLOSE_ISOMERASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSDIEICQTATLIRMKTIASNLGLHDDDITPQGRYKAKVNIDALKHLEDKPSGKLILVT CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEHHHHHHCCCCCCCCEEEEE AITPTPLGEGKTVTTIGLAQGLAKLGESVSACIRQPSMGPVFGVKGGAAGGGYSQVAPME EECCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCHH ELNLHLTGDIHAITAAHNLASAAIDARIYHEQRLGYNIFSEKNDLPALRIDPTQVVWKRV HCCEEEECCEEEEHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCEEEECHHHHHHHHH MDHNDRALRMVTIGKNEDNKTINGYEREDGFDITAASELMAILALATDLQDLRQRIGRIV HCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCEEE VAYNLDGLPITTEDLQVAGAMTVTMKFAINPTLMQTLEGVPTFVHSGPFANIAHGNSSII EEEECCCCCCCHHHHHEEEEEEEEEEEECCHHHHHHHCCCCHHHCCCCCCEECCCCCCEE ADNIALKLTDYTVLVATLRGIKANSGLFPLSSGQSLPKALFVPNQEALIAGLDNLHWHIK ECCEEEEEECCEEEEHHHHCCCCCCCCCCCCCCCCCCCEEECCCHHHHEECCCHHHHHHH NCAKYGLPVVVAINRFPEDTQEELDFLADWVTSQSSELNLDVAISEAFGKGGEGTRELAQ HHHHHCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEHHCCCCCCCHHHHHH KVLIACAQETEFTPLYTPDMSLLDKLTAVAIKGYGAERLELSEKAQQQLAMFEQLGYQHL HHHHHHHCCCCCCCEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCHHHH SVCMAKTPASISTDGNIKGAPTDFIVPIRELRLCAGAGFVYALCGNVMTMPGLPEKPAFM HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCEEECCCCCCCCCEE NLDIDSNGNITGLS EEEECCCCCEECCC >Mature Secondary Structure MKSDIEICQTATLIRMKTIASNLGLHDDDITPQGRYKAKVNIDALKHLEDKPSGKLILVT CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEHHHHHHCCCCCCCCEEEEE AITPTPLGEGKTVTTIGLAQGLAKLGESVSACIRQPSMGPVFGVKGGAAGGGYSQVAPME EECCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCHH ELNLHLTGDIHAITAAHNLASAAIDARIYHEQRLGYNIFSEKNDLPALRIDPTQVVWKRV HCCEEEECCEEEEHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCEEEECHHHHHHHHH MDHNDRALRMVTIGKNEDNKTINGYEREDGFDITAASELMAILALATDLQDLRQRIGRIV HCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCEEE VAYNLDGLPITTEDLQVAGAMTVTMKFAINPTLMQTLEGVPTFVHSGPFANIAHGNSSII EEEECCCCCCCHHHHHEEEEEEEEEEEECCHHHHHHHCCCCHHHCCCCCCEECCCCCCEE ADNIALKLTDYTVLVATLRGIKANSGLFPLSSGQSLPKALFVPNQEALIAGLDNLHWHIK ECCEEEEEECCEEEEHHHHCCCCCCCCCCCCCCCCCCCEEECCCHHHHEECCCHHHHHHH NCAKYGLPVVVAINRFPEDTQEELDFLADWVTSQSSELNLDVAISEAFGKGGEGTRELAQ HHHHHCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEHHCCCCCCCHHHHHH KVLIACAQETEFTPLYTPDMSLLDKLTAVAIKGYGAERLELSEKAQQQLAMFEQLGYQHL HHHHHHHCCCCCCCEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCHHHH SVCMAKTPASISTDGNIKGAPTDFIVPIRELRLCAGAGFVYALCGNVMTMPGLPEKPAFM HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCEEECCCCCCCCCEE NLDIDSNGNITGLS EEEECCCCCEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA