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The map label for this gene is ompC [H]

Identifier: 209695620

GI number: 209695620

Start: 2343403

End: 2344461

Strand: Direct

Name: ompC [H]

Synonym: VSAL_I2182

Alternate gene names: 209695620

Gene position: 2343403-2344461 (Clockwise)

Preceding gene: 209695615

Following gene: 209695623

Centisome position: 70.47

GC content: 43.06

Gene sequence:

>1059_bases
ATGAAAAAGACACTTTTAGCATTAGCGGTACCAGCACTACTTATGGCTGGCTCTGCATCAGCAACAACGGTATACACAGC
AGAAGATGGTTCGACAATTGATGTATATAGCCGTTTAGGTTTTAACATTACTGACCGTGCAGGCATGGGTGAAGAGGGCG
ATTCAGTTGGTAATTTTGATGCACGTATCGGTCTAGGTGGCTCTCAAGTCGTTAATGATAAAGTGTCTGTTATTGGTTGG
GCAGAATATCAAGTAAATGCGGCTGAAGCTCGCGGCAATGGCGATTGGTCACCTCGTTACGTATGGGCGGGTATTGACGC
TTCTGAAGCGGGTAAAGTGACTTTTGGTCGTGTTGCTTCAGGCATCATTATGCTTTCTGATTTAGGCGATGTATTTGCGG
CTTCTGATGTGGTTTTAGGTCGTCAAATGGAGTTAGTTGATAATTCAGCAGCTCAAACATTCCGCCAAGATGGCACTATT
CAATATCAAAACAGTTTTGGTGCGTTTGATATGTCAGTTGCTTACATTTTAGGTAACTCAGATTCAGACCAAGATGGTTC
TTACAATGCAGTAGGTCGCTACACATTTGATTTAGGTAACGCGGGTACATTAGCACCTGTTATAGCATACCAAGCAAACA
GTACCGGTGAAAACGCAGATAATCCAGATGCAGATTACACATTCTGGGGTGCGGGTCTTCAATACAAACTGAATGAATTA
ACGCTTGCTGCAATGTATAACCAAGATGAAATCGAAGGTGTGTACTCTGATAAATCAACAGATAAGAGCTATGAATTAAC
AGCGGTATACAACATCAATGATGATTGGACAGCGCGCATGGGCTACCGCTCATTAGAAAACAGCGGTGGTGATGAAGCGG
AATACAAAGATACTACCTTTGAAGTTCAATACCACTTAACGGCTCGTTCTTCTATCTACACAAGTTACGTGATGCGTAAC
GGTGAAAATGGCAAAGCAGTACCTGCGAGCACTAACGTGATGAGCTGGAACGACGCTGAAGAAGATTACTACCACTTAGG
TCTTCGCTATGAATTCTAA

Upstream 100 bases:

>100_bases
ATTCGACAAAACATGTATGGATTGCAAGAATTCTTGAGTTAGGCGTTCAACTTATAGAACCGTCAAACCAATATAAGTTC
AAAAATATAGGGTATATAAC

Downstream 100 bases:

>100_bases
TCTGACCAATAATATTGATATTGCTGTTTATCTATAAGGGTGGATTCTTAGTTAATTATCAATCAGGTTAGAATACTCAA
ATCCTCGCTAATTCGTTAGC

Product: outer membrane protein, porin

Products: NA

Alternate protein names: Porin ompC [H]

Number of amino acids: Translated: 352; Mature: 352

Protein sequence:

>352_residues
MKKTLLALAVPALLMAGSASATTVYTAEDGSTIDVYSRLGFNITDRAGMGEEGDSVGNFDARIGLGGSQVVNDKVSVIGW
AEYQVNAAEARGNGDWSPRYVWAGIDASEAGKVTFGRVASGIIMLSDLGDVFAASDVVLGRQMELVDNSAAQTFRQDGTI
QYQNSFGAFDMSVAYILGNSDSDQDGSYNAVGRYTFDLGNAGTLAPVIAYQANSTGENADNPDADYTFWGAGLQYKLNEL
TLAAMYNQDEIEGVYSDKSTDKSYELTAVYNINDDWTARMGYRSLENSGGDEAEYKDTTFEVQYHLTARSSIYTSYVMRN
GENGKAVPASTNVMSWNDAEEDYYHLGLRYEF

Sequences:

>Translated_352_residues
MKKTLLALAVPALLMAGSASATTVYTAEDGSTIDVYSRLGFNITDRAGMGEEGDSVGNFDARIGLGGSQVVNDKVSVIGW
AEYQVNAAEARGNGDWSPRYVWAGIDASEAGKVTFGRVASGIIMLSDLGDVFAASDVVLGRQMELVDNSAAQTFRQDGTI
QYQNSFGAFDMSVAYILGNSDSDQDGSYNAVGRYTFDLGNAGTLAPVIAYQANSTGENADNPDADYTFWGAGLQYKLNEL
TLAAMYNQDEIEGVYSDKSTDKSYELTAVYNINDDWTARMGYRSLENSGGDEAEYKDTTFEVQYHLTARSSIYTSYVMRN
GENGKAVPASTNVMSWNDAEEDYYHLGLRYEF
>Mature_352_residues
MKKTLLALAVPALLMAGSASATTVYTAEDGSTIDVYSRLGFNITDRAGMGEEGDSVGNFDARIGLGGSQVVNDKVSVIGW
AEYQVNAAEARGNGDWSPRYVWAGIDASEAGKVTFGRVASGIIMLSDLGDVFAASDVVLGRQMELVDNSAAQTFRQDGTI
QYQNSFGAFDMSVAYILGNSDSDQDGSYNAVGRYTFDLGNAGTLAPVIAYQANSTGENADNPDADYTFWGAGLQYKLNEL
TLAAMYNQDEIEGVYSDKSTDKSYELTAVYNINDDWTARMGYRSLENSGGDEAEYKDTTFEVQYHLTARSSIYTSYVMRN
GENGKAVPASTNVMSWNDAEEDYYHLGLRYEF

Specific function: Forms passive diffusion pores which allow small molecular weight hydrophilic materials across the outer membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family [H]

Homologues:

Organism=Escherichia coli, GI1788544, Length=276, Percent_Identity=28.9855072463768, Blast_Score=62, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001897
- InterPro:   IPR013793
- InterPro:   IPR001702 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 38201; Mature: 38201

Theoretical pI: Translated: 3.99; Mature: 3.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTLLALAVPALLMAGSASATTVYTAEDGSTIDVYSRLGFNITDRAGMGEEGDSVGNFD
CCCHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEHHCCCCEECCCCCCCCCCCCCCCE
ARIGLGGSQVVNDKVSVIGWAEYQVNAAEARGNGDWSPRYVWAGIDASEAGKVTFGRVAS
EEEECCCCCEECCCEEEEEEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCEEEHHHHC
GIIMLSDLGDVFAASDVVLGRQMELVDNSAAQTFRQDGTIQYQNSFGAFDMSVAYILGNS
CEEEEECCCCHHHHCCEEECCCHHHHCCHHHHHHHCCCEEEECCCCCCEEEEEEEEEECC
DSDQDGSYNAVGRYTFDLGNAGTLAPVIAYQANSTGENADNPDADYTFWGAGLQYKLNEL
CCCCCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCEEEECCCCEEEECEE
TLAAMYNQDEIEGVYSDKSTDKSYELTAVYNINDDWTARMGYRSLENSGGDEAEYKDTTF
EEEEECCCHHCCEEECCCCCCCCEEEEEEEECCCCCEECCCHHHHHCCCCCCCCCCCCEE
EVQYHLTARSSIYTSYVMRNGENGKAVPASTNVMSWNDAEEDYYHLGLRYEF
EEEEEEEECCHHEEEEEEECCCCCCCCCCCCCEEECCCCCCCEEEEEEEECC
>Mature Secondary Structure
MKKTLLALAVPALLMAGSASATTVYTAEDGSTIDVYSRLGFNITDRAGMGEEGDSVGNFD
CCCHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEHHCCCCEECCCCCCCCCCCCCCCE
ARIGLGGSQVVNDKVSVIGWAEYQVNAAEARGNGDWSPRYVWAGIDASEAGKVTFGRVAS
EEEECCCCCEECCCEEEEEEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCEEEHHHHC
GIIMLSDLGDVFAASDVVLGRQMELVDNSAAQTFRQDGTIQYQNSFGAFDMSVAYILGNS
CEEEEECCCCHHHHCCEEECCCHHHHCCHHHHHHHCCCEEEECCCCCCEEEEEEEEEECC
DSDQDGSYNAVGRYTFDLGNAGTLAPVIAYQANSTGENADNPDADYTFWGAGLQYKLNEL
CCCCCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCEEEECCCCEEEECEE
TLAAMYNQDEIEGVYSDKSTDKSYELTAVYNINDDWTARMGYRSLENSGGDEAEYKDTTF
EEEEECCCHHCCEEECCCCCCCCEEEEEEEECCCCCEECCCHHHHHCCCCCCCCCCCCEE
EVQYHLTARSSIYTSYVMRNGENGKAVPASTNVMSWNDAEEDYYHLGLRYEF
EEEEEEEECCHHEEEEEEECCCCCCCCCCCCCEEECCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2684785; 3412902; 11677608; 12644504; 10405180 [H]