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The map label for this gene is ycfD [H]

Identifier: 209695412

GI number: 209695412

Start: 2090451

End: 2091623

Strand: Reverse

Name: ycfD [H]

Synonym: VSAL_I1952

Alternate gene names: 209695412

Gene position: 2091623-2090451 (Counterclockwise)

Preceding gene: 209695413

Following gene: 209695402

Centisome position: 62.9

GC content: 39.9

Gene sequence:

>1173_bases
ATGTATCAATTAAGCTTTTCACTACAAGAATTTCTCTCGGAATATTGGCAGAAAAAACCCGTCATCATCAAAGGTGGTTT
TGAGAACTTTCAAGATCCAGTCACACCTGAAGAATTAGCAGGTTTAACACTAGAAAACGAAGTGGACTCAGGCTTTGTTT
CTAACTTAAATGGCGAATGGAAAGCAGAACACGGCCCATTAACTGAAGAACTATTTGATACACTGGGCGAAACTAACTGG
TCTATTATCGTTCAAGCCGCTAACCATTGGCATGAAGGTGCAGCTGAGTTGTTTAAACCATTTAAACAAATGCCAAATTG
GTTATTTGATGATGTAATGATCAGCTATTCAGTACCCGATGGTGGCGTAGGCCCGCACATTGATCAATATGATGTTTTTA
TTATTCAAGGCCAAGGTAAGCGTCATTGGCGTGTGGGTGATATCGGCGAATACGAAGAAGAACATCGTCATGGTACATTA
AAGCAAATTACAGGTTTTGATCCGATCATTGATCAAATCTTAGAACCGGGTGATATTCTTTATATTCCACCAGGCTTTCC
ACACGATGGCTACGCACTAGAGCCATCAATGAGTTACTCTGCCGGCTTCCGCTCTCCAAAAGAACAAGAGCTAGTGAGTA
ATTTTGCGGATTTCATTATTGAAAATGAAAAAAATGATGTGCATTACCATAATCCAGATCTTAAAGCGCAAACACATGGC
ACAGAGATCACCACACAAAGTTTTGAAGATTTAAAAGCCATGATGCTAAATGCGTTGTCGGATGAACAGAGCCTTAAGCA
ATTTATGGGAGAGTATTTAAGTAACTCTCGCCATCATTTGAACATTTTGCCTGATACTGAGAAGTGGACAACAGAAGAGT
TATTGGCTTATCTACAATCAGGTCAAGCTCTGATTAAAGTGGCCGGTGTTCGTGCTTTCTATCATGAAGAAGAAGCATGT
GAAGACAACATGACACTTTATATTGATGGTGAGAGCTATGTGTTCCCACTAACAGTAAAAGAGGATGTGATTGCTTTATG
TGAATCATCAGAATTTACACTACTTGATATTGAGAACTTACTGCAAGATCCGCACTCAGTGGCTAACCTGCTGCAATTTG
TCAACACAGGTTACTGGTTCGTAGAATCAGACGAAGACGAAGACGAAGAATAA

Upstream 100 bases:

>100_bases
ATCCTAAGCCAATATCACGATAACGTTAGATACTGATCGTCGTCTCACCCCTAAATTTATACAAAATGCCCGACGACGGG
CATTTTTATTGGAATAAATA

Downstream 100 bases:

>100_bases
ACGATCATATAATCAATACAATCACAATGAATTGTACGGATTAAATAATAACGCCCATAGGTTTCATCCCATGGGCGTTT
TTTATTTACACCGTTTCGAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 390; Mature: 390

Protein sequence:

>390_residues
MYQLSFSLQEFLSEYWQKKPVIIKGGFENFQDPVTPEELAGLTLENEVDSGFVSNLNGEWKAEHGPLTEELFDTLGETNW
SIIVQAANHWHEGAAELFKPFKQMPNWLFDDVMISYSVPDGGVGPHIDQYDVFIIQGQGKRHWRVGDIGEYEEEHRHGTL
KQITGFDPIIDQILEPGDILYIPPGFPHDGYALEPSMSYSAGFRSPKEQELVSNFADFIIENEKNDVHYHNPDLKAQTHG
TEITTQSFEDLKAMMLNALSDEQSLKQFMGEYLSNSRHHLNILPDTEKWTTEELLAYLQSGQALIKVAGVRAFYHEEEAC
EDNMTLYIDGESYVFPLTVKEDVIALCESSEFTLLDIENLLQDPHSVANLLQFVNTGYWFVESDEDEDEE

Sequences:

>Translated_390_residues
MYQLSFSLQEFLSEYWQKKPVIIKGGFENFQDPVTPEELAGLTLENEVDSGFVSNLNGEWKAEHGPLTEELFDTLGETNW
SIIVQAANHWHEGAAELFKPFKQMPNWLFDDVMISYSVPDGGVGPHIDQYDVFIIQGQGKRHWRVGDIGEYEEEHRHGTL
KQITGFDPIIDQILEPGDILYIPPGFPHDGYALEPSMSYSAGFRSPKEQELVSNFADFIIENEKNDVHYHNPDLKAQTHG
TEITTQSFEDLKAMMLNALSDEQSLKQFMGEYLSNSRHHLNILPDTEKWTTEELLAYLQSGQALIKVAGVRAFYHEEEAC
EDNMTLYIDGESYVFPLTVKEDVIALCESSEFTLLDIENLLQDPHSVANLLQFVNTGYWFVESDEDEDEE
>Mature_390_residues
MYQLSFSLQEFLSEYWQKKPVIIKGGFENFQDPVTPEELAGLTLENEVDSGFVSNLNGEWKAEHGPLTEELFDTLGETNW
SIIVQAANHWHEGAAELFKPFKQMPNWLFDDVMISYSVPDGGVGPHIDQYDVFIIQGQGKRHWRVGDIGEYEEEHRHGTL
KQITGFDPIIDQILEPGDILYIPPGFPHDGYALEPSMSYSAGFRSPKEQELVSNFADFIIENEKNDVHYHNPDLKAQTHG
TEITTQSFEDLKAMMLNALSDEQSLKQFMGEYLSNSRHHLNILPDTEKWTTEELLAYLQSGQALIKVAGVRAFYHEEEAC
EDNMTLYIDGESYVFPLTVKEDVIALCESSEFTLLDIENLLQDPHSVANLLQFVNTGYWFVESDEDEDEE

Specific function: Unknown

COG id: COG2850

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 JmjC domain [H]

Homologues:

Organism=Escherichia coli, GI87081836, Length=382, Percent_Identity=45.8115183246073, Blast_Score=369, Evalue=1e-103,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013109
- InterPro:   IPR022777
- InterPro:   IPR014710
- InterPro:   IPR003347 [H]

Pfam domain/function: PF08007 Cupin_4 [H]

EC number: NA

Molecular weight: Translated: 44560; Mature: 44560

Theoretical pI: Translated: 4.05; Mature: 4.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYQLSFSLQEFLSEYWQKKPVIIKGGFENFQDPVTPEELAGLTLENEVDSGFVSNLNGEW
CEEECHHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHCCCEECCCCCCCHHHCCCCCE
KAEHGPLTEELFDTLGETNWSIIVQAANHWHEGAAELFKPFKQMPNWLFDDVMISYSVPD
ECCCCCCHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCC
GGVGPHIDQYDVFIIQGQGKRHWRVGDIGEYEEEHRHGTLKQITGFDPIIDQILEPGDIL
CCCCCCCCCEEEEEEECCCCCCEECCCCCCHHHHHHCCCHHHHCCCCHHHHHHCCCCCEE
YIPPGFPHDGYALEPSMSYSAGFRSPKEQELVSNFADFIIENEKNDVHYHNPDLKAQTHG
EECCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHEECCCCCCEECCCCCCCCCCC
TEITTQSFEDLKAMMLNALSDEQSLKQFMGEYLSNSRHHLNILPDTEKWTTEELLAYLQS
CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHC
GQALIKVAGVRAFYHEEEACEDNMTLYIDGESYVFPLTVKEDVIALCESSEFTLLDIENL
CCCEEHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEEHHHHHHHHCCCCEEEEEHHHH
LQDPHSVANLLQFVNTGYWFVESDEDEDEE
HCCHHHHHHHHHHHHCCEEEEECCCCCCCC
>Mature Secondary Structure
MYQLSFSLQEFLSEYWQKKPVIIKGGFENFQDPVTPEELAGLTLENEVDSGFVSNLNGEW
CEEECHHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHCCCEECCCCCCCHHHCCCCCE
KAEHGPLTEELFDTLGETNWSIIVQAANHWHEGAAELFKPFKQMPNWLFDDVMISYSVPD
ECCCCCCHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCC
GGVGPHIDQYDVFIIQGQGKRHWRVGDIGEYEEEHRHGTLKQITGFDPIIDQILEPGDIL
CCCCCCCCCEEEEEEECCCCCCEECCCCCCHHHHHHCCCHHHHCCCCHHHHHHCCCCCEE
YIPPGFPHDGYALEPSMSYSAGFRSPKEQELVSNFADFIIENEKNDVHYHNPDLKAQTHG
EECCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHEECCCCCCEECCCCCCCCCCC
TEITTQSFEDLKAMMLNALSDEQSLKQFMGEYLSNSRHHLNILPDTEKWTTEELLAYLQS
CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHC
GQALIKVAGVRAFYHEEEACEDNMTLYIDGESYVFPLTVKEDVIALCESSEFTLLDIENL
CCCEEHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEEHHHHHHHHCCCCEEEEEHHHH
LQDPHSVANLLQFVNTGYWFVESDEDEDEE
HCCHHHHHHHHHHHHCCEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1729240 [H]