| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209695324
Identifier: 209695324
GI number: 209695324
Start: 1993015
End: 1993521
Strand: Reverse
Name: 209695324
Synonym: VSAL_I1857
Alternate gene names: NA
Gene position: 1993521-1993015 (Counterclockwise)
Preceding gene: 209695325
Following gene: 209695323
Centisome position: 59.95
GC content: 41.42
Gene sequence:
>507_bases ATGAAAGTACATACTTTAGATAAAGCAGAACTAATCAGTGAAATCCAATACGGCTCAAACCTAAACCATGCAATGGAAGC GGGTCGTCGTGCAGATTTTGCCTTAATGATGTCTTTATTATCTAATGACTTACGTGAAAACACACCCGTAGAAAAAATTG ATGAGAAAAAACTAACCGAAGAACTACTACGTCAGCGCTTTCAATTGGCTGATGCCCAAATACTTCGCAGCAACGAAGAA AGCTACTCTCGTTCAGCCTCTCAAGCTCATCAGTTTCATAATGGCGGATTAGCAAGTGCTAAGCTGCAACATGGCCTAGC ACCCGATGCAATGGCTTACATGCCCCAAGATACCTGTAACTTACCAGAAGACGTATACCACAACCTATCTGGTCACCAAC GACGTCAGTTAGAAAGTGGAAATGAAATATTTAACGCGATCCCTCAAGATCTATACAACGAATTAGTCACAGCAAAGCGT CATTCAGAGATGAACTTATACGTATAG
Upstream 100 bases:
>100_bases TCAATAAAATAATTTTAAAAAACGGCAATTAATTTCCTAAAAAAGCTAAAGATTTTCAATTCTTTTCCGATAAGTATTTA TCATCAAGAGGAATTGATTC
Downstream 100 bases:
>100_bases CTTAACGATTCAAGCTATTGAACATCGACCTTAACTACTTATTTGTTCATTCACTTACCCTTACTTTCCTTTCTCTTCTA GATTTATTCTCTTCTCATCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 168; Mature: 168
Protein sequence:
>168_residues MKVHTLDKAELISEIQYGSNLNHAMEAGRRADFALMMSLLSNDLRENTPVEKIDEKKLTEELLRQRFQLADAQILRSNEE SYSRSASQAHQFHNGGLASAKLQHGLAPDAMAYMPQDTCNLPEDVYHNLSGHQRRQLESGNEIFNAIPQDLYNELVTAKR HSEMNLYV
Sequences:
>Translated_168_residues MKVHTLDKAELISEIQYGSNLNHAMEAGRRADFALMMSLLSNDLRENTPVEKIDEKKLTEELLRQRFQLADAQILRSNEE SYSRSASQAHQFHNGGLASAKLQHGLAPDAMAYMPQDTCNLPEDVYHNLSGHQRRQLESGNEIFNAIPQDLYNELVTAKR HSEMNLYV >Mature_168_residues MKVHTLDKAELISEIQYGSNLNHAMEAGRRADFALMMSLLSNDLRENTPVEKIDEKKLTEELLRQRFQLADAQILRSNEE SYSRSASQAHQFHNGGLASAKLQHGLAPDAMAYMPQDTCNLPEDVYHNLSGHQRRQLESGNEIFNAIPQDLYNELVTAKR HSEMNLYV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19126; Mature: 19126
Theoretical pI: Translated: 5.82; Mature: 5.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKVHTLDKAELISEIQYGSNLNHAMEAGRRADFALMMSLLSNDLRENTPVEKIDEKKLTE CCCCCCHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH ELLRQRFQLADAQILRSNEESYSRSASQAHQFHNGGLASAKLQHGLAPDAMAYMPQDTCN HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHCCCCCCC LPEDVYHNLSGHQRRQLESGNEIFNAIPQDLYNELVTAKRHSEMNLYV CCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MKVHTLDKAELISEIQYGSNLNHAMEAGRRADFALMMSLLSNDLRENTPVEKIDEKKLTE CCCCCCHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH ELLRQRFQLADAQILRSNEESYSRSASQAHQFHNGGLASAKLQHGLAPDAMAYMPQDTCN HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHCCCCCCC LPEDVYHNLSGHQRRQLESGNEIFNAIPQDLYNELVTAKRHSEMNLYV CCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA