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The map label for this gene is sodB [H]

Identifier: 209695325

GI number: 209695325

Start: 1993731

End: 1994315

Strand: Reverse

Name: sodB [H]

Synonym: VSAL_I1858

Alternate gene names: 209695325

Gene position: 1994315-1993731 (Counterclockwise)

Preceding gene: 209695327

Following gene: 209695324

Centisome position: 59.98

GC content: 44.1

Gene sequence:

>585_bases
ATGTCATTTGAATTACCAGCTCTACCGTTCGCAAAAGACGCATTAGAACCACATATCTCAGCTGAGACTTTAGATTACCA
CCACGGCAAACACCACAACACTTATGTGGTTAAGCTTAACGGTCTTATCCCAGGGACTGAATTTGAAGGCAAGACGCTAG
AAGAGATCATCAAAACTTCTACTGGCGGTGTTTTTAACAACGCCGCTCAAATTTGGAACCACACGTTCTACTGGAACTGC
CTAGCTCCAAACGCTGGCGGCCAACCAACAGGCGCTGTCGCTGCTGCAATCGATGCTGCATTTGGTTCTTTCGAAGAATT
CAAAGCAAAATTCACAGATTCAGCAATCAACAACTTTGGTTCTTCTTGGACTTGGCTTGTTAAAAATGCTGACGGCTCTC
TAGCTATCGTTAATACATCTAACGCGGCAACACCGCTAACAGATGAAGGTGTAACGCCACTACTAACTGTTGATCTATGG
GAACATGCTTACTACATTGATTTCCGTAACGTTCGTCCTGATTACATGGGTGCGTTCTGGTCTCTAGTTAACTGGTCTTT
CGTAGAAGAAAACCTAGCTAAGTAA

Upstream 100 bases:

>100_bases
TAGAATCAAATCGAAGTCAGATAAAGCTCTACGTTTAATAGAGCACATATTTTTGGAATTTAGTGAGGCATAGACCTCTT
ATTAAATGGAGACATGAGCA

Downstream 100 bases:

>100_bases
GTCTCTCATTTGAATAACCATTTCTATAATGGTTAATATCAAATCAAAAAGGTCAGTATTTATACTGACCTTTTTTTATT
ACTCCAGTTTGCGGTAACAC

Product: superoxide dismutase [Fe]

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 193

Protein sequence:

>194_residues
MSFELPALPFAKDALEPHISAETLDYHHGKHHNTYVVKLNGLIPGTEFEGKTLEEIIKTSTGGVFNNAAQIWNHTFYWNC
LAPNAGGQPTGAVAAAIDAAFGSFEEFKAKFTDSAINNFGSSWTWLVKNADGSLAIVNTSNAATPLTDEGVTPLLTVDLW
EHAYYIDFRNVRPDYMGAFWSLVNWSFVEENLAK

Sequences:

>Translated_194_residues
MSFELPALPFAKDALEPHISAETLDYHHGKHHNTYVVKLNGLIPGTEFEGKTLEEIIKTSTGGVFNNAAQIWNHTFYWNC
LAPNAGGQPTGAVAAAIDAAFGSFEEFKAKFTDSAINNFGSSWTWLVKNADGSLAIVNTSNAATPLTDEGVTPLLTVDLW
EHAYYIDFRNVRPDYMGAFWSLVNWSFVEENLAK
>Mature_193_residues
SFELPALPFAKDALEPHISAETLDYHHGKHHNTYVVKLNGLIPGTEFEGKTLEEIIKTSTGGVFNNAAQIWNHTFYWNCL
APNAGGQPTGAVAAAIDAAFGSFEEFKAKFTDSAINNFGSSWTWLVKNADGSLAIVNTSNAATPLTDEGVTPLLTVDLWE
HAYYIDFRNVRPDYMGAFWSLVNWSFVEENLAK

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=196, Percent_Identity=40.8163265306122, Blast_Score=149, Evalue=1e-36,
Organism=Homo sapiens, GI67782305, Length=196, Percent_Identity=40.8163265306122, Blast_Score=149, Evalue=1e-36,
Organism=Homo sapiens, GI67782309, Length=188, Percent_Identity=36.1702127659575, Blast_Score=115, Evalue=2e-26,
Organism=Escherichia coli, GI1787946, Length=193, Percent_Identity=76.1658031088083, Blast_Score=313, Evalue=6e-87,
Organism=Escherichia coli, GI1790342, Length=198, Percent_Identity=41.9191919191919, Blast_Score=156, Evalue=8e-40,
Organism=Caenorhabditis elegans, GI17506561, Length=193, Percent_Identity=37.8238341968912, Blast_Score=132, Evalue=8e-32,
Organism=Caenorhabditis elegans, GI17569479, Length=191, Percent_Identity=37.696335078534, Blast_Score=131, Evalue=2e-31,
Organism=Saccharomyces cerevisiae, GI6321796, Length=203, Percent_Identity=35.4679802955665, Blast_Score=110, Evalue=1e-25,
Organism=Drosophila melanogaster, GI17136812, Length=185, Percent_Identity=38.9189189189189, Blast_Score=129, Evalue=2e-30,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 21389; Mature: 21258

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFELPALPFAKDALEPHISAETLDYHHGKHHNTYVVKLNGLIPGTEFEGKTLEEIIKTS
CCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHC
TGGVFNNAAQIWNHTFYWNCLAPNAGGQPTGAVAAAIDAAFGSFEEFKAKFTDSAINNFG
CCCCCCCHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC
SSWTWLVKNADGSLAIVNTSNAATPLTDEGVTPLLTVDLWEHAYYIDFRNVRPDYMGAFW
CCEEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCHHHHHHHH
SLVNWSFVEENLAK
HHHHHHHHHHHHCC
>Mature Secondary Structure 
SFELPALPFAKDALEPHISAETLDYHHGKHHNTYVVKLNGLIPGTEFEGKTLEEIIKTS
CCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHC
TGGVFNNAAQIWNHTFYWNCLAPNAGGQPTGAVAAAIDAAFGSFEEFKAKFTDSAINNFG
CCCCCCCHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC
SSWTWLVKNADGSLAIVNTSNAATPLTDEGVTPLLTVDLWEHAYYIDFRNVRPDYMGAFW
CCEEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCHHHHHHHH
SLVNWSFVEENLAK
HHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3542995 [H]