| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209695260
Identifier: 209695260
GI number: 209695260
Start: 1899903
End: 1901024
Strand: Reverse
Name: 209695260
Synonym: VSAL_I1783
Alternate gene names: NA
Gene position: 1901024-1899903 (Counterclockwise)
Preceding gene: 209695261
Following gene: 209695259
Centisome position: 57.17
GC content: 44.56
Gene sequence:
>1122_bases ATGCCACTGATGGAGATTAATAAGCAAAGACGGAGCTTATTGAAAGGTGGTGTTGGGGTGGTTACGTTGTCCCCTTGGTT AGCCGCTTGCTCTGCAATCAATACTCATGAGAAAAATGGTTCGCCATCACTGATCTCTTGTGCTCGTACTGCTAATGGGC ACTTTAATGCGATTGTGGCTGACAGCGAGGGACTTCCTATTCATGCTATTCCTTTACCTGAAAGAGGGCATGGTGTTGCA ATAAGCCCTGATGGTTCGCTCGCGGTTGCGTTTGCTCGTAGGCCCGGCAGTTATATGCAATTGTTTACTGTTAAAACGGG TGAGAGTTTTTCAATTACCGCGGCGATGCCTAATCGCTATTTTTATGGTCACGGTGTGTTTTCTTCTGATGGTAAGAGGT TGTATGTCACTGAGGGAGAGAAAAAGACCAGTAAAGGAATTGTAGGTGTTTACCACCTTTCAAATAATCAGTTAACGAAA GTGCATGAATTCACGGATTTTGGAATTGGTCCTCACGAAATTATAAAAGTCGATGACACCACATTGGCCATTGGGGTTGG TGGTGTGCATACCAAAGACAGAGAGCCGATGAATATTGAAACGATGATTCCTGCATTGGTGTATCTGTCTACGGTTACGG GGGAGGTTCTTGAAAGCGTAGGGCTAGCTGATCATAAGTTAAGTATTCGCCATTTATCATTAACGGATGATGGGCGAGTA TTGTGTGGGCAACAATACCGTGGTGAACCCGAAGATGGAATGCCGTTAGTGGCCATCCATGAACGTGGTAAACCGTTAGT TCAATTAAATGCAGAACCAGAAGAATGGCTTAGATTTAATCATTACATTGCCAGTATCGCTGTATTGGGTGATCACGTGA TTGCAACCTCTCCTAGGGGGAATTGCTATGGTGTGTGGGATTTAAAACAAAATACTTTGGTTGAGATTGTGACTTTAGTT GATGCCTCTGGTGTGGTGGTAAGTCGTAATCATCAAGATGTCCCACGATGGTATATCAGTTCAGGTGCCGGAAAGGTGGT TGGGCGAACCGAAAGTGGCGAGGTTGAAAGCCATCAAACAAGGGTGATGTGGGATAATCATTGGAGTAAAATTCTGGTCT GA
Upstream 100 bases:
>100_bases GGATACCAACAAACCCTCTCTTTATACAATAAGTTAGAGTATTTGAAATACTTAATCCATGAAGAAGTTGCCATCGAATT GAACATCGCAATAGGATTTA
Downstream 100 bases:
>100_bases ATTCCACTTAAATAATAGTCATGTTATTCTTAGGATAATTCATTTAAGAAGAGATAAACATGAGCTTACAATATCAAATT ATTCCGGTTACTGCTTATGA
Product: lipoprotein
Products: NA
Alternate protein names: Secreted Protein; Lipoprotein; Tat Pathway Signal Sequence Domain-Containing Protein
Number of amino acids: Translated: 373; Mature: 372
Protein sequence:
>373_residues MPLMEINKQRRSLLKGGVGVVTLSPWLAACSAINTHEKNGSPSLISCARTANGHFNAIVADSEGLPIHAIPLPERGHGVA ISPDGSLAVAFARRPGSYMQLFTVKTGESFSITAAMPNRYFYGHGVFSSDGKRLYVTEGEKKTSKGIVGVYHLSNNQLTK VHEFTDFGIGPHEIIKVDDTTLAIGVGGVHTKDREPMNIETMIPALVYLSTVTGEVLESVGLADHKLSIRHLSLTDDGRV LCGQQYRGEPEDGMPLVAIHERGKPLVQLNAEPEEWLRFNHYIASIAVLGDHVIATSPRGNCYGVWDLKQNTLVEIVTLV DASGVVVSRNHQDVPRWYISSGAGKVVGRTESGEVESHQTRVMWDNHWSKILV
Sequences:
>Translated_373_residues MPLMEINKQRRSLLKGGVGVVTLSPWLAACSAINTHEKNGSPSLISCARTANGHFNAIVADSEGLPIHAIPLPERGHGVA ISPDGSLAVAFARRPGSYMQLFTVKTGESFSITAAMPNRYFYGHGVFSSDGKRLYVTEGEKKTSKGIVGVYHLSNNQLTK VHEFTDFGIGPHEIIKVDDTTLAIGVGGVHTKDREPMNIETMIPALVYLSTVTGEVLESVGLADHKLSIRHLSLTDDGRV LCGQQYRGEPEDGMPLVAIHERGKPLVQLNAEPEEWLRFNHYIASIAVLGDHVIATSPRGNCYGVWDLKQNTLVEIVTLV DASGVVVSRNHQDVPRWYISSGAGKVVGRTESGEVESHQTRVMWDNHWSKILV >Mature_372_residues PLMEINKQRRSLLKGGVGVVTLSPWLAACSAINTHEKNGSPSLISCARTANGHFNAIVADSEGLPIHAIPLPERGHGVAI SPDGSLAVAFARRPGSYMQLFTVKTGESFSITAAMPNRYFYGHGVFSSDGKRLYVTEGEKKTSKGIVGVYHLSNNQLTKV HEFTDFGIGPHEIIKVDDTTLAIGVGGVHTKDREPMNIETMIPALVYLSTVTGEVLESVGLADHKLSIRHLSLTDDGRVL CGQQYRGEPEDGMPLVAIHERGKPLVQLNAEPEEWLRFNHYIASIAVLGDHVIATSPRGNCYGVWDLKQNTLVEIVTLVD ASGVVVSRNHQDVPRWYISSGAGKVVGRTESGEVESHQTRVMWDNHWSKILV
Specific function: Unknown
COG id: COG3490
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40673; Mature: 40542
Theoretical pI: Translated: 7.00; Mature: 7.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLMEINKQRRSLLKGGVGVVTLSPWLAACSAINTHEKNGSPSLISCARTANGHFNAIVA CCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHCCCCCCCCCCCEEEEEECCCCCEEEEEE DSEGLPIHAIPLPERGHGVAISPDGSLAVAFARRPGSYMQLFTVKTGESFSITAAMPNRY CCCCCEEEEEECCCCCCEEEECCCCCEEEEEECCCCCEEEEEEEECCCCEEEEEECCCCE FYGHGVFSSDGKRLYVTEGEKKTSKGIVGVYHLSNNQLTKVHEFTDFGIGPHEIIKVDDT EEECCEECCCCCEEEEECCCCCCCCCEEEEEEECCCCEEEEEEHHHCCCCHHHEEEECCC TLAIGVGGVHTKDREPMNIETMIPALVYLSTVTGEVLESVGLADHKLSIRHLSLTDDGRV EEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCE LCGQQYRGEPEDGMPLVAIHERGKPLVQLNAEPEEWLRFNHYIASIAVLGDHVIATSPRG EECCCCCCCCCCCCCEEEEECCCCEEEEECCCHHHHHHHHHHHEEEEEECCEEEEECCCC NCYGVWDLKQNTLVEIVTLVDASGVVVSRNHQDVPRWYISSGAGKVVGRTESGEVESHQT CEEEEEECCCCCEEEEEEEECCCCEEEECCCCCCCEEEEECCCCEEEECCCCCCCCCCEE RVMWDNHWSKILV EEEECCCCEEECC >Mature Secondary Structure PLMEINKQRRSLLKGGVGVVTLSPWLAACSAINTHEKNGSPSLISCARTANGHFNAIVA CCHHHHHHHHHHHHCCCEEEEECHHHHHHHHCCCCCCCCCCCEEEEEECCCCCEEEEEE DSEGLPIHAIPLPERGHGVAISPDGSLAVAFARRPGSYMQLFTVKTGESFSITAAMPNRY CCCCCEEEEEECCCCCCEEEECCCCCEEEEEECCCCCEEEEEEEECCCCEEEEEECCCCE FYGHGVFSSDGKRLYVTEGEKKTSKGIVGVYHLSNNQLTKVHEFTDFGIGPHEIIKVDDT EEECCEECCCCCEEEEECCCCCCCCCEEEEEEECCCCEEEEEEHHHCCCCHHHEEEECCC TLAIGVGGVHTKDREPMNIETMIPALVYLSTVTGEVLESVGLADHKLSIRHLSLTDDGRV EEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCE LCGQQYRGEPEDGMPLVAIHERGKPLVQLNAEPEEWLRFNHYIASIAVLGDHVIATSPRG EECCCCCCCCCCCCCEEEEECCCCEEEEECCCHHHHHHHHHHHEEEEEECCEEEEECCCC NCYGVWDLKQNTLVEIVTLVDASGVVVSRNHQDVPRWYISSGAGKVVGRTESGEVESHQT CEEEEEECCCCCEEEEEEEECCCCEEEECCCCCCCEEEEECCCCEEEECCCCCCCCCCEE RVMWDNHWSKILV EEEECCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA