| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209695261
Identifier: 209695261
GI number: 209695261
Start: 1901005
End: 1902024
Strand: Reverse
Name: 209695261
Synonym: VSAL_I1784
Alternate gene names: NA
Gene position: 1902024-1901005 (Counterclockwise)
Preceding gene: 209695262
Following gene: 209695260
Centisome position: 57.2
GC content: 39.8
Gene sequence:
>1020_bases ATGAAACCTCTTTATTTATTATTTGTCTCCGTGGCTTTTTTAACCGCTTGCCAGAGTACAAGTAAAACGAGTGAGCAACC AGATTCCATTCAAATGGTCGATCATGTTTATTTTATTGAAAAACAATCGGCTGAGCGTTTAGCGGCCTCAAGCCAACGAT TGGCGGTTAAGTTTGCGGCTTATTGCACTAGTGGACAGCATAAAGGTGAGCTAACTGAACAATGGCAACAAACAATGGAA GCGTGGATGGCTTTACAAGGACAAGAGAGAGGTCCTGAGTCAGCATTATCATTAAATTGGAATATGCAATTCTGGCCTGA TAAGAAAAACACCACAGGTAGAAAAATGAGCCAATTGCTGACTAAAGATCAAGAGTGGAATATCCCGGAGATCCAACAGC AAAGTGTGACAACTCAAGGAGTAGGGGCGATAGAGTGGTTGTTATTTGATAATGCCTCAACGTTACCAAGTGAAGGTTCG TGCGAATTAGGCAGTGCAATAACGAGTAACTTTTCATTAAACGCTCAGAAAATAGCACAAGCGTGGCAAACTAACCCGTG GGATGAAGTAGATGAAACCATGTGGTTAAATGAATACGTTGCGTTGCTTGCGAATCAACTTGATTACAGTATGAAAAAAA TAAGCAGACCGTTAGCCAAAATAGGTCAACCGAGACCTTATTTTTCTGAGGCATGGCGTTCAGAAACCTCATTACTTATG CTGGAAAAAAACGTTGAGGCAATGCAGGCGTTGTATTTAGCAAATGGTTTCGGATTAGATCATCATTTGAGAATGGAAGG GCATGTAGATTTAGCGGATCGTATTGTTGACCATTTTTCATCTACGTTAGAAACGTGGCCTGAAAGTCCTTCTTTATTTA CGACATTACAAAGTAAATCTGGATACCAACAAACCCTCTCTTTATACAATAAGTTAGAGTATTTGAAATACTTAATCCAT GAAGAAGTTGCCATCGAATTGAACATCGCAATAGGATTTAATGCCACTGATGGAGATTAA
Upstream 100 bases:
>100_bases GGTGGTGAAGCGCAACAAAGCCGTGATGATGTCGTCAAACTATCAACCCAAGATCGTAACGCATTACTCGCGTTTTTAGA GTCACTGTAAGGTATTAGCG
Downstream 100 bases:
>100_bases TAAGCAAAGACGGAGCTTATTGAAAGGTGGTGTTGGGGTGGTTACGTTGTCCCCTTGGTTAGCCGCTTGCTCTGCAATCA ATACTCATGAGAAAAATGGT
Product: lipoprotein
Products: NA
Alternate protein names: Periplasmic Lipoprotein; Imelysin Superfamily Protein; Periplasmic Lipoprotein-Like Protein; Iron-Regulated Protein A
Number of amino acids: Translated: 339; Mature: 339
Protein sequence:
>339_residues MKPLYLLFVSVAFLTACQSTSKTSEQPDSIQMVDHVYFIEKQSAERLAASSQRLAVKFAAYCTSGQHKGELTEQWQQTME AWMALQGQERGPESALSLNWNMQFWPDKKNTTGRKMSQLLTKDQEWNIPEIQQQSVTTQGVGAIEWLLFDNASTLPSEGS CELGSAITSNFSLNAQKIAQAWQTNPWDEVDETMWLNEYVALLANQLDYSMKKISRPLAKIGQPRPYFSEAWRSETSLLM LEKNVEAMQALYLANGFGLDHHLRMEGHVDLADRIVDHFSSTLETWPESPSLFTTLQSKSGYQQTLSLYNKLEYLKYLIH EEVAIELNIAIGFNATDGD
Sequences:
>Translated_339_residues MKPLYLLFVSVAFLTACQSTSKTSEQPDSIQMVDHVYFIEKQSAERLAASSQRLAVKFAAYCTSGQHKGELTEQWQQTME AWMALQGQERGPESALSLNWNMQFWPDKKNTTGRKMSQLLTKDQEWNIPEIQQQSVTTQGVGAIEWLLFDNASTLPSEGS CELGSAITSNFSLNAQKIAQAWQTNPWDEVDETMWLNEYVALLANQLDYSMKKISRPLAKIGQPRPYFSEAWRSETSLLM LEKNVEAMQALYLANGFGLDHHLRMEGHVDLADRIVDHFSSTLETWPESPSLFTTLQSKSGYQQTLSLYNKLEYLKYLIH EEVAIELNIAIGFNATDGD >Mature_339_residues MKPLYLLFVSVAFLTACQSTSKTSEQPDSIQMVDHVYFIEKQSAERLAASSQRLAVKFAAYCTSGQHKGELTEQWQQTME AWMALQGQERGPESALSLNWNMQFWPDKKNTTGRKMSQLLTKDQEWNIPEIQQQSVTTQGVGAIEWLLFDNASTLPSEGS CELGSAITSNFSLNAQKIAQAWQTNPWDEVDETMWLNEYVALLANQLDYSMKKISRPLAKIGQPRPYFSEAWRSETSLLM LEKNVEAMQALYLANGFGLDHHLRMEGHVDLADRIVDHFSSTLETWPESPSLFTTLQSKSGYQQTLSLYNKLEYLKYLIH EEVAIELNIAIGFNATDGD
Specific function: Unknown
COG id: COG3489
COG function: function code R; Predicted periplasmic lipoprotein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38472; Mature: 38472
Theoretical pI: Translated: 4.65; Mature: 4.65
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPLYLLFVSVAFLTACQSTSKTSEQPDSIQMVDHVYFIEKQSAERLAASSQRLAVKFAA CCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH YCTSGQHKGELTEQWQQTMEAWMALQGQERGPESALSLNWNMQFWPDKKNTTGRKMSQLL HHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCEEECCCCCCCCHHHHHHHH TKDQEWNIPEIQQQSVTTQGVGAIEWLLFDNASTLPSEGSCELGSAITSNFSLNAQKIAQ CCCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCHHHHHH AWQTNPWDEVDETMWLNEYVALLANQLDYSMKKISRPLAKIGQPRPYFSEAWRSETSLLM HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCEEEE LEKNVEAMQALYLANGFGLDHHLRMEGHVDLADRIVDHFSSTLETWPESPSLFTTLQSKS ECCCHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCC GYQQTLSLYNKLEYLKYLIHEEVAIELNIAIGFNATDGD CHHHHHHHHHHHHHHHHHHHHCEEEEEEEEEEECCCCCC >Mature Secondary Structure MKPLYLLFVSVAFLTACQSTSKTSEQPDSIQMVDHVYFIEKQSAERLAASSQRLAVKFAA CCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH YCTSGQHKGELTEQWQQTMEAWMALQGQERGPESALSLNWNMQFWPDKKNTTGRKMSQLL HHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCEEECCCCCCCCHHHHHHHH TKDQEWNIPEIQQQSVTTQGVGAIEWLLFDNASTLPSEGSCELGSAITSNFSLNAQKIAQ CCCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCHHHHHH AWQTNPWDEVDETMWLNEYVALLANQLDYSMKKISRPLAKIGQPRPYFSEAWRSETSLLM HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCEEEE LEKNVEAMQALYLANGFGLDHHLRMEGHVDLADRIVDHFSSTLETWPESPSLFTTLQSKS ECCCHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCC GYQQTLSLYNKLEYLKYLIHEEVAIELNIAIGFNATDGD CHHHHHHHHHHHHHHHHHHHHCEEEEEEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA