Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209695261

Identifier: 209695261

GI number: 209695261

Start: 1901005

End: 1902024

Strand: Reverse

Name: 209695261

Synonym: VSAL_I1784

Alternate gene names: NA

Gene position: 1902024-1901005 (Counterclockwise)

Preceding gene: 209695262

Following gene: 209695260

Centisome position: 57.2

GC content: 39.8

Gene sequence:

>1020_bases
ATGAAACCTCTTTATTTATTATTTGTCTCCGTGGCTTTTTTAACCGCTTGCCAGAGTACAAGTAAAACGAGTGAGCAACC
AGATTCCATTCAAATGGTCGATCATGTTTATTTTATTGAAAAACAATCGGCTGAGCGTTTAGCGGCCTCAAGCCAACGAT
TGGCGGTTAAGTTTGCGGCTTATTGCACTAGTGGACAGCATAAAGGTGAGCTAACTGAACAATGGCAACAAACAATGGAA
GCGTGGATGGCTTTACAAGGACAAGAGAGAGGTCCTGAGTCAGCATTATCATTAAATTGGAATATGCAATTCTGGCCTGA
TAAGAAAAACACCACAGGTAGAAAAATGAGCCAATTGCTGACTAAAGATCAAGAGTGGAATATCCCGGAGATCCAACAGC
AAAGTGTGACAACTCAAGGAGTAGGGGCGATAGAGTGGTTGTTATTTGATAATGCCTCAACGTTACCAAGTGAAGGTTCG
TGCGAATTAGGCAGTGCAATAACGAGTAACTTTTCATTAAACGCTCAGAAAATAGCACAAGCGTGGCAAACTAACCCGTG
GGATGAAGTAGATGAAACCATGTGGTTAAATGAATACGTTGCGTTGCTTGCGAATCAACTTGATTACAGTATGAAAAAAA
TAAGCAGACCGTTAGCCAAAATAGGTCAACCGAGACCTTATTTTTCTGAGGCATGGCGTTCAGAAACCTCATTACTTATG
CTGGAAAAAAACGTTGAGGCAATGCAGGCGTTGTATTTAGCAAATGGTTTCGGATTAGATCATCATTTGAGAATGGAAGG
GCATGTAGATTTAGCGGATCGTATTGTTGACCATTTTTCATCTACGTTAGAAACGTGGCCTGAAAGTCCTTCTTTATTTA
CGACATTACAAAGTAAATCTGGATACCAACAAACCCTCTCTTTATACAATAAGTTAGAGTATTTGAAATACTTAATCCAT
GAAGAAGTTGCCATCGAATTGAACATCGCAATAGGATTTAATGCCACTGATGGAGATTAA

Upstream 100 bases:

>100_bases
GGTGGTGAAGCGCAACAAAGCCGTGATGATGTCGTCAAACTATCAACCCAAGATCGTAACGCATTACTCGCGTTTTTAGA
GTCACTGTAAGGTATTAGCG

Downstream 100 bases:

>100_bases
TAAGCAAAGACGGAGCTTATTGAAAGGTGGTGTTGGGGTGGTTACGTTGTCCCCTTGGTTAGCCGCTTGCTCTGCAATCA
ATACTCATGAGAAAAATGGT

Product: lipoprotein

Products: NA

Alternate protein names: Periplasmic Lipoprotein; Imelysin Superfamily Protein; Periplasmic Lipoprotein-Like Protein; Iron-Regulated Protein A

Number of amino acids: Translated: 339; Mature: 339

Protein sequence:

>339_residues
MKPLYLLFVSVAFLTACQSTSKTSEQPDSIQMVDHVYFIEKQSAERLAASSQRLAVKFAAYCTSGQHKGELTEQWQQTME
AWMALQGQERGPESALSLNWNMQFWPDKKNTTGRKMSQLLTKDQEWNIPEIQQQSVTTQGVGAIEWLLFDNASTLPSEGS
CELGSAITSNFSLNAQKIAQAWQTNPWDEVDETMWLNEYVALLANQLDYSMKKISRPLAKIGQPRPYFSEAWRSETSLLM
LEKNVEAMQALYLANGFGLDHHLRMEGHVDLADRIVDHFSSTLETWPESPSLFTTLQSKSGYQQTLSLYNKLEYLKYLIH
EEVAIELNIAIGFNATDGD

Sequences:

>Translated_339_residues
MKPLYLLFVSVAFLTACQSTSKTSEQPDSIQMVDHVYFIEKQSAERLAASSQRLAVKFAAYCTSGQHKGELTEQWQQTME
AWMALQGQERGPESALSLNWNMQFWPDKKNTTGRKMSQLLTKDQEWNIPEIQQQSVTTQGVGAIEWLLFDNASTLPSEGS
CELGSAITSNFSLNAQKIAQAWQTNPWDEVDETMWLNEYVALLANQLDYSMKKISRPLAKIGQPRPYFSEAWRSETSLLM
LEKNVEAMQALYLANGFGLDHHLRMEGHVDLADRIVDHFSSTLETWPESPSLFTTLQSKSGYQQTLSLYNKLEYLKYLIH
EEVAIELNIAIGFNATDGD
>Mature_339_residues
MKPLYLLFVSVAFLTACQSTSKTSEQPDSIQMVDHVYFIEKQSAERLAASSQRLAVKFAAYCTSGQHKGELTEQWQQTME
AWMALQGQERGPESALSLNWNMQFWPDKKNTTGRKMSQLLTKDQEWNIPEIQQQSVTTQGVGAIEWLLFDNASTLPSEGS
CELGSAITSNFSLNAQKIAQAWQTNPWDEVDETMWLNEYVALLANQLDYSMKKISRPLAKIGQPRPYFSEAWRSETSLLM
LEKNVEAMQALYLANGFGLDHHLRMEGHVDLADRIVDHFSSTLETWPESPSLFTTLQSKSGYQQTLSLYNKLEYLKYLIH
EEVAIELNIAIGFNATDGD

Specific function: Unknown

COG id: COG3489

COG function: function code R; Predicted periplasmic lipoprotein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38472; Mature: 38472

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPLYLLFVSVAFLTACQSTSKTSEQPDSIQMVDHVYFIEKQSAERLAASSQRLAVKFAA
CCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
YCTSGQHKGELTEQWQQTMEAWMALQGQERGPESALSLNWNMQFWPDKKNTTGRKMSQLL
HHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCEEECCCCCCCCHHHHHHHH
TKDQEWNIPEIQQQSVTTQGVGAIEWLLFDNASTLPSEGSCELGSAITSNFSLNAQKIAQ
CCCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCHHHHHH
AWQTNPWDEVDETMWLNEYVALLANQLDYSMKKISRPLAKIGQPRPYFSEAWRSETSLLM
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCEEEE
LEKNVEAMQALYLANGFGLDHHLRMEGHVDLADRIVDHFSSTLETWPESPSLFTTLQSKS
ECCCHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCC
GYQQTLSLYNKLEYLKYLIHEEVAIELNIAIGFNATDGD
CHHHHHHHHHHHHHHHHHHHHCEEEEEEEEEEECCCCCC
>Mature Secondary Structure
MKPLYLLFVSVAFLTACQSTSKTSEQPDSIQMVDHVYFIEKQSAERLAASSQRLAVKFAA
CCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
YCTSGQHKGELTEQWQQTMEAWMALQGQERGPESALSLNWNMQFWPDKKNTTGRKMSQLL
HHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCEEECCCCCCCCHHHHHHHH
TKDQEWNIPEIQQQSVTTQGVGAIEWLLFDNASTLPSEGSCELGSAITSNFSLNAQKIAQ
CCCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCHHHHHH
AWQTNPWDEVDETMWLNEYVALLANQLDYSMKKISRPLAKIGQPRPYFSEAWRSETSLLM
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCEEEE
LEKNVEAMQALYLANGFGLDHHLRMEGHVDLADRIVDHFSSTLETWPESPSLFTTLQSKS
ECCCHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCC
GYQQTLSLYNKLEYLKYLIHEEVAIELNIAIGFNATDGD
CHHHHHHHHHHHHHHHHHHHHCEEEEEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA