| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is huvZ
Identifier: 209695228
GI number: 209695228
Start: 1863104
End: 1863634
Strand: Reverse
Name: huvZ
Synonym: VSAL_I1748
Alternate gene names: NA
Gene position: 1863634-1863104 (Counterclockwise)
Preceding gene: 209695229
Following gene: 209695224
Centisome position: 56.05
GC content: 35.78
Gene sequence:
>531_bases ATGAACCAAGACATCAAAAAAGAACGTTTACAAAATCGTTTAGAACCAGAAATTCAAGAGTTTCGTGATTCAAAAAAAAC ACTTCAACTTGCTACGGTTGATAGCGAAGGAAAGCCAAACGTGAGTTATGCACCTTTCGTATTACTTAATGATGGTTACT ACGTGTTAATTTCAGAAATAGCGCGTCACGCTCGTAATTTAATGCAAAATACAGACGTATCTTTAATGCTTATTGAAGAT GAAGAATCGTCAAAATTACTTTTTGCTCGTAAGCGTTTAACTTTTGATGCGACAGCCATTTTAATTGATCGTGATGAAGA TAAATGGCAAGAAGCCGTAACTCAAATGAGACTTCGTTTTGGTGAAATAATTGACGGGCTTAGCTCACTAGAGGACTTTA AAATGTTTCGTCTTAAGCCAATTAAGGGCTTGTTTGTAAAAGGTTTTGGTCAGGCATTTCAAGTAAGTGGTGATGACTTA GTGGATTTTGTCCATTTAGAACAAGGTCATAAAAAGCACGAAAAAGCGTAA
Upstream 100 bases:
>100_bases GGACGAGATAAAAAACGTCAATTACTTCCTGAACAAGTCCGTGCTTTTTGTGTCTTAAAAGAAAAATACGCATAAAAATA ATTATAGAAAGGAAAGTCAG
Downstream 100 bases:
>100_bases TTGGCCTCCAATATATAGAATGAACATCAGCCCAAGTATTCGTACTCGGGCTTTTTTATTATAGAAAAGTGAGGTAACTC TAGAAAATAAAACATACTTT
Product: heme uptake and utilization protein HuvZ
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 176; Mature: 176
Protein sequence:
>176_residues MNQDIKKERLQNRLEPEIQEFRDSKKTLQLATVDSEGKPNVSYAPFVLLNDGYYVLISEIARHARNLMQNTDVSLMLIED EESSKLLFARKRLTFDATAILIDRDEDKWQEAVTQMRLRFGEIIDGLSSLEDFKMFRLKPIKGLFVKGFGQAFQVSGDDL VDFVHLEQGHKKHEKA
Sequences:
>Translated_176_residues MNQDIKKERLQNRLEPEIQEFRDSKKTLQLATVDSEGKPNVSYAPFVLLNDGYYVLISEIARHARNLMQNTDVSLMLIED EESSKLLFARKRLTFDATAILIDRDEDKWQEAVTQMRLRFGEIIDGLSSLEDFKMFRLKPIKGLFVKGFGQAFQVSGDDL VDFVHLEQGHKKHEKA >Mature_176_residues MNQDIKKERLQNRLEPEIQEFRDSKKTLQLATVDSEGKPNVSYAPFVLLNDGYYVLISEIARHARNLMQNTDVSLMLIED EESSKLLFARKRLTFDATAILIDRDEDKWQEAVTQMRLRFGEIIDGLSSLEDFKMFRLKPIKGLFVKGFGQAFQVSGDDL VDFVHLEQGHKKHEKA
Specific function: Unknown
COG id: COG0748
COG function: function code P; Putative heme iron utilization protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR019595 - InterPro: IPR011576 - InterPro: IPR012349 - InterPro: IPR009002 - InterPro: IPR014419 [H]
Pfam domain/function: PF10615 DUF2470; PF01243 Pyridox_oxidase [H]
EC number: NA
Molecular weight: Translated: 20377; Mature: 20377
Theoretical pI: Translated: 5.72; Mature: 5.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNQDIKKERLQNRLEPEIQEFRDSKKTLQLATVDSEGKPNVSYAPFVLLNDGYYVLISEI CCCCHHHHHHHHHCCHHHHHHHCHHHEEEEEEECCCCCCCCCCCCEEEECCCEEHHHHHH ARHARNLMQNTDVSLMLIEDEESSKLLFARKRLTFDATAILIDRDEDKWQEAVTQMRLRF HHHHHHHHHCCCEEEEEEECCCCCCEEHHHHHCCEEEEEEEEECCHHHHHHHHHHHHHHH GEIIDGLSSLEDFKMFRLKPIKGLFVKGFGQAFQVSGDDLVDFVHLEQGHKKHEKA HHHHHHHHHHHHHHHHHHCCCCHHEECCCCCEEEECCCHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MNQDIKKERLQNRLEPEIQEFRDSKKTLQLATVDSEGKPNVSYAPFVLLNDGYYVLISEI CCCCHHHHHHHHHCCHHHHHHHCHHHEEEEEEECCCCCCCCCCCCEEEECCCEEHHHHHH ARHARNLMQNTDVSLMLIEDEESSKLLFARKRLTFDATAILIDRDEDKWQEAVTQMRLRF HHHHHHHHHCCCEEEEEEECCCCCCEEHHHHHCCEEEEEEEEECCHHHHHHHHHHHHHHH GEIIDGLSSLEDFKMFRLKPIKGLFVKGFGQAFQVSGDDLVDFVHLEQGHKKHEKA HHHHHHHHHHHHHHHHHHCCCCHHEECCCCCEEEECCCHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800; 10675023 [H]