| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209695224
Identifier: 209695224
GI number: 209695224
Start: 1857562
End: 1858416
Strand: Reverse
Name: 209695224
Synonym: VSAL_I1743
Alternate gene names: NA
Gene position: 1858416-1857562 (Counterclockwise)
Preceding gene: 209695228
Following gene: 209695223
Centisome position: 55.89
GC content: 38.83
Gene sequence:
>855_bases ATGGAAACACATTGCTATGATTCTTTGGTTATTGATGATTTATCCTCCTTTTATTTGATGCTAGACACAAGTCAGAGTGT TGACGTATTAAAACAGTTATATCAATTGGACACGGTGATTGAGCAGGAACCTCTTTATTTGTATGAGCCTTGGGATGATT TGATATCTGTCTCTCCTTACTTGGTAAAAGCAACGCCTGTTATTGCACAATGGTTTGAAAGTCAATCTGGTCAGCTAGAT GGTTTCTTATTGAGTTCGGCGTTAGATCTAGAAAGTCTTGTCGAACATTTTAGAGGTTTGATTAAGGTTCAATCGCCTTA TGGTTCATCTATCATATTGAAATCCGCGCATTCAGGATGTGCCAATGTTTTATTCTCAACAGGAACAGATTGGTATTGGC AACACATTAATGAAGTTTGGCTTCCATCTAAAAAAGGATGGGCACATTACCTATCGCCTTGCACTGAGATGAAAAGCGTC AAACCTTATCGTTTAACGGACGAACAATGGCAAGCGTTAGGAGAGTTAGCGACTGAAAATGCCTATGCCTATGTACTTAA TCATGTGGAATATTTCTTCCCACATTGTTTAGAGGGCGTGATAGATAAACAAAAATGGATTCAGTATTGGTTCGATGCCG CTTATAGCAGAGGGTTTCAAAATGAGACTGACGTCTGTCTATTTATGAATGTGATGGGATATTTAGGGAAAGAAGCGATC ACAACCGATAAATACCCAAAAATCACCGAATTGATCTATCAAACATCGCAGCAAACCCCAGAACAAAGAATCAAACAAGC GGCGGATTTGGCCTATCAATATCGTCACTCTATGCAAAAGGATTTACAAGAATGA
Upstream 100 bases:
>100_bases AACATACAAGAAGTAAAATTCACGCCACTCGTCAAATCGAGGCATTAAAAACATCGGATCCAGTCTGTGAAGAGTGTGAA CAAGATCAGGAACAAGAATA
Downstream 100 bases:
>100_bases GCGAAGCAAACAATGCGGCCATGTGTGGCAGTAAAAAAGATGCGAAAAACCCAGCAGGGGCTTGCCCTGTAAAGTTTGGT GTTATTGATATCATTCCGGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 284; Mature: 284
Protein sequence:
>284_residues METHCYDSLVIDDLSSFYLMLDTSQSVDVLKQLYQLDTVIEQEPLYLYEPWDDLISVSPYLVKATPVIAQWFESQSGQLD GFLLSSALDLESLVEHFRGLIKVQSPYGSSIILKSAHSGCANVLFSTGTDWYWQHINEVWLPSKKGWAHYLSPCTEMKSV KPYRLTDEQWQALGELATENAYAYVLNHVEYFFPHCLEGVIDKQKWIQYWFDAAYSRGFQNETDVCLFMNVMGYLGKEAI TTDKYPKITELIYQTSQQTPEQRIKQAADLAYQYRHSMQKDLQE
Sequences:
>Translated_284_residues METHCYDSLVIDDLSSFYLMLDTSQSVDVLKQLYQLDTVIEQEPLYLYEPWDDLISVSPYLVKATPVIAQWFESQSGQLD GFLLSSALDLESLVEHFRGLIKVQSPYGSSIILKSAHSGCANVLFSTGTDWYWQHINEVWLPSKKGWAHYLSPCTEMKSV KPYRLTDEQWQALGELATENAYAYVLNHVEYFFPHCLEGVIDKQKWIQYWFDAAYSRGFQNETDVCLFMNVMGYLGKEAI TTDKYPKITELIYQTSQQTPEQRIKQAADLAYQYRHSMQKDLQE >Mature_284_residues METHCYDSLVIDDLSSFYLMLDTSQSVDVLKQLYQLDTVIEQEPLYLYEPWDDLISVSPYLVKATPVIAQWFESQSGQLD GFLLSSALDLESLVEHFRGLIKVQSPYGSSIILKSAHSGCANVLFSTGTDWYWQHINEVWLPSKKGWAHYLSPCTEMKSV KPYRLTDEQWQALGELATENAYAYVLNHVEYFFPHCLEGVIDKQKWIQYWFDAAYSRGFQNETDVCLFMNVMGYLGKEAI TTDKYPKITELIYQTSQQTPEQRIKQAADLAYQYRHSMQKDLQE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32948; Mature: 32948
Theoretical pI: Translated: 4.50; Mature: 4.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure METHCYDSLVIDDLSSFYLMLDTSQSVDVLKQLYQLDTVIEQEPLYLYEPWDDLISVSPY CCCCHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHCCCCCEEECCHHHHHCCCCH LVKATPVIAQWFESQSGQLDGFLLSSALDLESLVEHFRGLIKVQSPYGSSIILKSAHSGC HHHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHHHHHHEEECCCCCCEEEEECCCCHH ANVLFSTGTDWYWQHINEVWLPSKKGWAHYLSPCTEMKSVKPYRLTDEQWQALGELATEN HHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC AYAYVLNHVEYFFPHCLEGVIDKQKWIQYWFDAAYSRGFQNETDVCLFMNVMGYLGKEAI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHC TTDKYPKITELIYQTSQQTPEQRIKQAADLAYQYRHSMQKDLQE CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure METHCYDSLVIDDLSSFYLMLDTSQSVDVLKQLYQLDTVIEQEPLYLYEPWDDLISVSPY CCCCHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHCCCCCEEECCHHHHHCCCCH LVKATPVIAQWFESQSGQLDGFLLSSALDLESLVEHFRGLIKVQSPYGSSIILKSAHSGC HHHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHHHHHHEEECCCCCCEEEEECCCCHH ANVLFSTGTDWYWQHINEVWLPSKKGWAHYLSPCTEMKSVKPYRLTDEQWQALGELATEN HHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC AYAYVLNHVEYFFPHCLEGVIDKQKWIQYWFDAAYSRGFQNETDVCLFMNVMGYLGKEAI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHC TTDKYPKITELIYQTSQQTPEQRIKQAADLAYQYRHSMQKDLQE CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA