| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209695221
Identifier: 209695221
GI number: 209695221
Start: 1852072
End: 1852803
Strand: Reverse
Name: 209695221
Synonym: VSAL_I1739
Alternate gene names: NA
Gene position: 1852803-1852072 (Counterclockwise)
Preceding gene: 209695222
Following gene: 209695218
Centisome position: 55.72
GC content: 33.47
Gene sequence:
>732_bases ATGCTAACTCATAAAGATATAGATAATAACGATAAAATAGAAGCCATGAGAATGGCCTTATACAACGAAGAAGTACTTTA TGAGTATGAAACTATAGAGCATCAATATTTAGGATATTTTGCAGCAGCCGGTTTTTTCAGTGTGATGCTTTGGTTTTTAT ATGATTTTAGTGATGATGGAATAGACGCAGGTGAAGCCATTATATTTGGTGGTGGTGGAACCATAATGACACTATTTTTA ATTTTTTTTGCTTCTGCAGACATAAAGCGGATTTACAAGTTCACTAAAAACGGAATATTAACCGAGCAAGCAGATGTGGT GCCTAAGTATGCTTATCAATGCATACGAATGATAGGTCGAGTGGGTGTTGTTGTATGTTTAGTTGCAGTTGTTTTTATTG GTCCCATGGCGTTCATTGGAGCAGGGGCCAGCGCGTTACTCTCATTCAAACTGATTAACTTTAGGTTGAAACCTATGATG TTTGAAACTTTGTATTTTGATGAGTCAGTGATAATTAAATCATCAAAAATAAACTATATAACGATAGTTCCAAATACTCA ATTATTACTGTCATTGGATGGTATTTTTTGCAATAAAAAACATGCAAATGATATTTTCAATACCTTGAGGGATTTTTATC CAAATGGTCATTTTTATGAGGTAGAGGAAGAAGATGATATTTATTCCCATTATAAATATAAAGAGTTCTTACATCCAATG GATCAGGATTGA
Upstream 100 bases:
>100_bases TAGAGGAAGAAGATGATATATATTCCCATTATAAATATAAAGAGTTCTTACATCCAATGGATCAAGATTGATGTTAAATA GTGATGGATACGGTTAAATA
Downstream 100 bases:
>100_bases TGTGAAATAGTAATGGATACGGTTAAATCATGCTAACTCATAAAGATATAGACAATAACGATAAAATAGAAACCATGAGA ATGGCCTTATACAACGAAGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 243; Mature: 243
Protein sequence:
>243_residues MLTHKDIDNNDKIEAMRMALYNEEVLYEYETIEHQYLGYFAAAGFFSVMLWFLYDFSDDGIDAGEAIIFGGGGTIMTLFL IFFASADIKRIYKFTKNGILTEQADVVPKYAYQCIRMIGRVGVVVCLVAVVFIGPMAFIGAGASALLSFKLINFRLKPMM FETLYFDESVIIKSSKINYITIVPNTQLLLSLDGIFCNKKHANDIFNTLRDFYPNGHFYEVEEEDDIYSHYKYKEFLHPM DQD
Sequences:
>Translated_243_residues MLTHKDIDNNDKIEAMRMALYNEEVLYEYETIEHQYLGYFAAAGFFSVMLWFLYDFSDDGIDAGEAIIFGGGGTIMTLFL IFFASADIKRIYKFTKNGILTEQADVVPKYAYQCIRMIGRVGVVVCLVAVVFIGPMAFIGAGASALLSFKLINFRLKPMM FETLYFDESVIIKSSKINYITIVPNTQLLLSLDGIFCNKKHANDIFNTLRDFYPNGHFYEVEEEDDIYSHYKYKEFLHPM DQD >Mature_243_residues MLTHKDIDNNDKIEAMRMALYNEEVLYEYETIEHQYLGYFAAAGFFSVMLWFLYDFSDDGIDAGEAIIFGGGGTIMTLFL IFFASADIKRIYKFTKNGILTEQADVVPKYAYQCIRMIGRVGVVVCLVAVVFIGPMAFIGAGASALLSFKLINFRLKPMM FETLYFDESVIIKSSKINYITIVPNTQLLLSLDGIFCNKKHANDIFNTLRDFYPNGHFYEVEEEDDIYSHYKYKEFLHPM DQD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27937; Mature: 27937
Theoretical pI: Translated: 4.64; Mature: 4.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTHKDIDNNDKIEAMRMALYNEEVLYEYETIEHQYLGYFAAAGFFSVMLWFLYDFSDDG CCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC IDAGEAIIFGGGGTIMTLFLIFFASADIKRIYKFTKNGILTEQADVVPKYAYQCIRMIGR CCCCCEEEECCCHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH VGVVVCLVAVVFIGPMAFIGAGASALLSFKLINFRLKPMMFETLYFDESVIIKSSKINYI HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHEEECHHHHHHHHCCCEEEEEECCCCEE TIVPNTQLLLSLDGIFCNKKHANDIFNTLRDFYPNGHFYEVEEEDDIYSHYKYKEFLHPM EECCCCEEEEEECCEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCC DQD CCC >Mature Secondary Structure MLTHKDIDNNDKIEAMRMALYNEEVLYEYETIEHQYLGYFAAAGFFSVMLWFLYDFSDDG CCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC IDAGEAIIFGGGGTIMTLFLIFFASADIKRIYKFTKNGILTEQADVVPKYAYQCIRMIGR CCCCCEEEECCCHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH VGVVVCLVAVVFIGPMAFIGAGASALLSFKLINFRLKPMMFETLYFDESVIIKSSKINYI HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHEEECHHHHHHHHCCCEEEEEECCCCEE TIVPNTQLLLSLDGIFCNKKHANDIFNTLRDFYPNGHFYEVEEEDDIYSHYKYKEFLHPM EECCCCEEEEEECCEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCC DQD CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA