| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209695222
Identifier: 209695222
GI number: 209695222
Start: 1852833
End: 1853519
Strand: Reverse
Name: 209695222
Synonym: VSAL_I1740
Alternate gene names: NA
Gene position: 1853519-1852833 (Counterclockwise)
Preceding gene: 209695223
Following gene: 209695221
Centisome position: 55.74
GC content: 32.31
Gene sequence:
>687_bases ATGAGAATGGCTTTATACAACGAAGAAGTACTTTATGAGTATGAAACCATAGAGCATCAATATTTGGGGTATTTTGCTGG TATTGGTTTTTTTAGTGTTATGAGTTGGATGTTATATGATTTTAGTCAAGAGATGCTTGATACCGGTGGTATTGTTGCAT TTAGTTTACTCACCATTTTCATGACATTGTTTTTTATTTTTTTTGGTTCAGCAGATATAAAGCGGATTTACAAGTTCACT AAAAACGGAATATTAACTGAGCAGGCAGATGTTGTGCCAGAGTATGCATATAAATGTATACGAATGATAGGTAGAGTGGG TGTCGTTGTATGTTTGATTTCTGTTGTTTTTGTTGGTCCTATGGCGTTTGTTGGAGCAGGGGCGAGTGCATTACTCTCAT TCAAACTGGTTAACTTTAGGTTGAAACCTATGATGTTTGAAACGTTGTATTTTGATGAGTCAGTGATAATTAAATCATCA AAAATAAACTATATTACGATAGTTCCAAATGCTCAATTATTACTGTCATTGGATGGTATTTTTTGCAATAAAAAAAATGC AAATGATATTTTTAATACCTTAAGGGAGTTTTATCCAAATGGTCATTTTTATGAGGTAGAGGAAGAAGATGATATATATT CCCATTATAAATATAAAGAGTTCTTACATCCAATGGATCAAGATTGA
Upstream 100 bases:
>100_bases AAGGAAATCGATAATTACGGTCCATTTGAACCCTCTGAGAATCTGAGCATCAATCATGCTAACTCATAAAAACATAGATA ATAACGATAAAATAGAAACC
Downstream 100 bases:
>100_bases TGTTAAATAGTGATGGATACGGTTAAATAATGCTAACTCATAAAGATATAGATAATAACGATAAAATAGAAGCCATGAGA ATGGCCTTATACAACGAAGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 228; Mature: 228
Protein sequence:
>228_residues MRMALYNEEVLYEYETIEHQYLGYFAGIGFFSVMSWMLYDFSQEMLDTGGIVAFSLLTIFMTLFFIFFGSADIKRIYKFT KNGILTEQADVVPEYAYKCIRMIGRVGVVVCLISVVFVGPMAFVGAGASALLSFKLVNFRLKPMMFETLYFDESVIIKSS KINYITIVPNAQLLLSLDGIFCNKKNANDIFNTLREFYPNGHFYEVEEEDDIYSHYKYKEFLHPMDQD
Sequences:
>Translated_228_residues MRMALYNEEVLYEYETIEHQYLGYFAGIGFFSVMSWMLYDFSQEMLDTGGIVAFSLLTIFMTLFFIFFGSADIKRIYKFT KNGILTEQADVVPEYAYKCIRMIGRVGVVVCLISVVFVGPMAFVGAGASALLSFKLVNFRLKPMMFETLYFDESVIIKSS KINYITIVPNAQLLLSLDGIFCNKKNANDIFNTLREFYPNGHFYEVEEEDDIYSHYKYKEFLHPMDQD >Mature_228_residues MRMALYNEEVLYEYETIEHQYLGYFAGIGFFSVMSWMLYDFSQEMLDTGGIVAFSLLTIFMTLFFIFFGSADIKRIYKFT KNGILTEQADVVPEYAYKCIRMIGRVGVVVCLISVVFVGPMAFVGAGASALLSFKLVNFRLKPMMFETLYFDESVIIKSS KINYITIVPNAQLLLSLDGIFCNKKNANDIFNTLREFYPNGHFYEVEEEDDIYSHYKYKEFLHPMDQD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26431; Mature: 26431
Theoretical pI: Translated: 4.67; Mature: 4.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 4.8 %Met (Translated Protein) 6.1 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 4.8 %Met (Mature Protein) 6.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRMALYNEEVLYEYETIEHQYLGYFAGIGFFSVMSWMLYDFSQEMLDTGGIVAFSLLTIF CCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH MTLFFIFFGSADIKRIYKFTKNGILTEQADVVPEYAYKCIRMIGRVGVVVCLISVVFVGP HHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MAFVGAGASALLSFKLVNFRLKPMMFETLYFDESVIIKSSKINYITIVPNAQLLLSLDGI HHHHHCCHHHHHHHHHHHEEECHHHHHHHHCCCEEEEEECCCCEEEECCCCEEEEEECCE FCNKKNANDIFNTLREFYPNGHFYEVEEEDDIYSHYKYKEFLHPMDQD EECCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCCC >Mature Secondary Structure MRMALYNEEVLYEYETIEHQYLGYFAGIGFFSVMSWMLYDFSQEMLDTGGIVAFSLLTIF CCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH MTLFFIFFGSADIKRIYKFTKNGILTEQADVVPEYAYKCIRMIGRVGVVVCLISVVFVGP HHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MAFVGAGASALLSFKLVNFRLKPMMFETLYFDESVIIKSSKINYITIVPNAQLLLSLDGI HHHHHCCHHHHHHHHHHHEEECHHHHHHHHCCCEEEEEECCCCEEEECCCCEEEEEECCE FCNKKNANDIFNTLREFYPNGHFYEVEEEDDIYSHYKYKEFLHPMDQD EECCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA