Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209695148

Identifier: 209695148

GI number: 209695148

Start: 1749138

End: 1749884

Strand: Reverse

Name: 209695148

Synonym: VSAL_I1649

Alternate gene names: NA

Gene position: 1749884-1749138 (Counterclockwise)

Preceding gene: 209695149

Following gene: 209695147

Centisome position: 52.63

GC content: 37.35

Gene sequence:

>747_bases
ATGGACGACATATTAAATTATGTACCTATAATATTCTCTGCAATAGCAGCAACTGTAGGTATTTTTGGAAACACGATAGA
CTTAAAAGGTAAATTACGTTACCGAGGTAAACTTCTGCTTGTGATCATTGGTTTGTCATCCATTTACTCACTACATCTCA
CCTACATACAGATTCAGAATCAACGCGAAAAAGTGGCCGATGAAGCTCGAATTGGTATGTTAATTGAGACTCAAGTAGAA
GAGAGTATTCAACATTTACTCGAGCCGTTTCGCTGGTTGTATACGGAATATGCAACTCACGAGGAGCTATTAGCAATACA
GGGTTATCCCCTTGCTAAAGGGGCGATTAGTTTAACTACGTTGCTTAAACCTGAAAATTTAAGCAAAGCTCAAGGTATGT
GCTTTGATGACAAACCTACCGAATTGGTAACGGTAGGGGAGAGCTTTAATTGGAAAATGATATTTTCAACTTCAATTCTT
AGAGGTTTAAATGGATTAGATCGTGTTGTAAATGTTTACGGAATGGTTTTAGATTCAAATTTGTTGACAGCTATTTATAA
ACTTCAAGATGAAGGTCATTTTAGTTCTATGTCGGTTTTTTGGAAGAAACACACTAATCAATCAACTGATATACATGGGA
ATGTAAACTGCACAGGGCAGGCAATTGGTAGTCATGAGCAGTACCTAAAGTTGATTGGAGAACTCAGAGACGCATTAAAA
GAGTCGTCGGGAGTATATGTACGCTAA

Upstream 100 bases:

>100_bases
GTTTACGGTGCAATGGTTTAGTAAGGTGATAGTGTTGCTCACTACTTAATGCGGCGTTAGCGTACAAAGCGTATATCATT
GAAAATAGCGAAGGTAATTC

Downstream 100 bases:

>100_bases
CAAGCAATTTAAGAGTGATTCAGCACGCTTGGCGTTTTTGGTTTGGGTTTAGTTTAGTGTTTACGGTGGTCAAATTAAGT
GTTGAGGTCGCGTGCTTCAC

Product: membrane protein, phage gene

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MDDILNYVPIIFSAIAATVGIFGNTIDLKGKLRYRGKLLLVIIGLSSIYSLHLTYIQIQNQREKVADEARIGMLIETQVE
ESIQHLLEPFRWLYTEYATHEELLAIQGYPLAKGAISLTTLLKPENLSKAQGMCFDDKPTELVTVGESFNWKMIFSTSIL
RGLNGLDRVVNVYGMVLDSNLLTAIYKLQDEGHFSSMSVFWKKHTNQSTDIHGNVNCTGQAIGSHEQYLKLIGELRDALK
ESSGVYVR

Sequences:

>Translated_248_residues
MDDILNYVPIIFSAIAATVGIFGNTIDLKGKLRYRGKLLLVIIGLSSIYSLHLTYIQIQNQREKVADEARIGMLIETQVE
ESIQHLLEPFRWLYTEYATHEELLAIQGYPLAKGAISLTTLLKPENLSKAQGMCFDDKPTELVTVGESFNWKMIFSTSIL
RGLNGLDRVVNVYGMVLDSNLLTAIYKLQDEGHFSSMSVFWKKHTNQSTDIHGNVNCTGQAIGSHEQYLKLIGELRDALK
ESSGVYVR
>Mature_248_residues
MDDILNYVPIIFSAIAATVGIFGNTIDLKGKLRYRGKLLLVIIGLSSIYSLHLTYIQIQNQREKVADEARIGMLIETQVE
ESIQHLLEPFRWLYTEYATHEELLAIQGYPLAKGAISLTTLLKPENLSKAQGMCFDDKPTELVTVGESFNWKMIFSTSIL
RGLNGLDRVVNVYGMVLDSNLLTAIYKLQDEGHFSSMSVFWKKHTNQSTDIHGNVNCTGQAIGSHEQYLKLIGELRDALK
ESSGVYVR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27875; Mature: 27875

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDILNYVPIIFSAIAATVGIFGNTIDLKGKLRYRGKLLLVIIGLSSIYSLHLTYIQIQN
CCHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEECCEEEEEEECHHHHHHHHEEEEEECC
QREKVADEARIGMLIETQVEESIQHLLEPFRWLYTEYATHEELLAIQGYPLAKGAISLTT
HHHHHHHHHHHCCEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHEEECCCCCCCCCEEEEE
LLKPENLSKAQGMCFDDKPTELVTVGESFNWKMIFSTSILRGLNGLDRVVNVYGMVLDSN
EECCCCCHHHCCCCCCCCCCEEEEECCCCCEEEEEHHHHHHHCCHHHHHHHHHHHHHHHH
LLTAIYKLQDEGHFSSMSVFWKKHTNQSTDIHGNVNCTGQAIGSHEQYLKLIGELRDALK
HHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHH
ESSGVYVR
HCCCCCCC
>Mature Secondary Structure
MDDILNYVPIIFSAIAATVGIFGNTIDLKGKLRYRGKLLLVIIGLSSIYSLHLTYIQIQN
CCHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEECCEEEEEEECHHHHHHHHEEEEEECC
QREKVADEARIGMLIETQVEESIQHLLEPFRWLYTEYATHEELLAIQGYPLAKGAISLTT
HHHHHHHHHHHCCEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHEEECCCCCCCCCEEEEE
LLKPENLSKAQGMCFDDKPTELVTVGESFNWKMIFSTSILRGLNGLDRVVNVYGMVLDSN
EECCCCCHHHCCCCCCCCCCEEEEECCCCCEEEEEHHHHHHHCCHHHHHHHHHHHHHHHH
LLTAIYKLQDEGHFSSMSVFWKKHTNQSTDIHGNVNCTGQAIGSHEQYLKLIGELRDALK
HHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHH
ESSGVYVR
HCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA