| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209695147
Identifier: 209695147
GI number: 209695147
Start: 1748538
End: 1748993
Strand: Reverse
Name: 209695147
Synonym: VSAL_I1648
Alternate gene names: NA
Gene position: 1748993-1748538 (Counterclockwise)
Preceding gene: 209695148
Following gene: 209695146
Centisome position: 52.6
GC content: 36.84
Gene sequence:
>456_bases ATGGATTTTTCACAATTTGGCAAGAAATATGGTGCGAATTCAGCGGCGCTAGAAAGAATGACCACGAGTCAGAAACTTGA ATGTTTAAACCTGTCAAATGATATCGATAAAATAAAAGGGTATCATTTCGAGACTGTTTGGTTGGAAGAAGAGTTTAGTG AAGTAGAAGCTAAAATTAACCTAAGTGAGCTAGCAGGTATAAATAAGGGAGATAACTACGATACTTGGCTAGACAGTTTA GAGACACTAAAGAAGCAAGATCATTTCACAGGATTTACTTCAATTCAAGATTTTGAAAATATACTTGTTAATCCAAATGA TATTGACGAGTTGCCGAGGGTTATACTATCCAACGGTAAATATTACATAGACGGGAATGGACGTCACCGCCTTACAATAG CAAAGTGTTTGGGGCTAGATACCAAAGATGTAAAGGTGAAGTTGAGAAAGCTGTAG
Upstream 100 bases:
>100_bases GGGTTTAGTTTAGTGTTTACGGTGGTCAAATTAAGTGTTGAGGTCGCGTGCTTCACACCTTAATTGGGCGTTAGGCTACA AATCAACATTGGAATAAAAA
Downstream 100 bases:
>100_bases CCTAACAAGCAATTTAAGAGGAATTAACAACGCTCGGCATTTTTGCTTCTACTTCAAATTTAGCGTTTACGGCACAATAC TTTAGATTTGGGTGGAGGCG
Product: phage protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 151; Mature: 151
Protein sequence:
>151_residues MDFSQFGKKYGANSAALERMTTSQKLECLNLSNDIDKIKGYHFETVWLEEEFSEVEAKINLSELAGINKGDNYDTWLDSL ETLKKQDHFTGFTSIQDFENILVNPNDIDELPRVILSNGKYYIDGNGRHRLTIAKCLGLDTKDVKVKLRKL
Sequences:
>Translated_151_residues MDFSQFGKKYGANSAALERMTTSQKLECLNLSNDIDKIKGYHFETVWLEEEFSEVEAKINLSELAGINKGDNYDTWLDSL ETLKKQDHFTGFTSIQDFENILVNPNDIDELPRVILSNGKYYIDGNGRHRLTIAKCLGLDTKDVKVKLRKL >Mature_151_residues MDFSQFGKKYGANSAALERMTTSQKLECLNLSNDIDKIKGYHFETVWLEEEFSEVEAKINLSELAGINKGDNYDTWLDSL ETLKKQDHFTGFTSIQDFENILVNPNDIDELPRVILSNGKYYIDGNGRHRLTIAKCLGLDTKDVKVKLRKL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17282; Mature: 17282
Theoretical pI: Translated: 5.05; Mature: 5.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDFSQFGKKYGANSAALERMTTSQKLECLNLSNDIDKIKGYHFETVWLEEEFSEVEAKIN CCHHHHHHHHCCCHHHHHHHHHHHHHHEECCCCCHHHHCCCCEEEEEEHHHHHHHHHHCC LSELAGINKGDNYDTWLDSLETLKKQDHFTGFTSIQDFENILVNPNDIDELPRVILSNGK HHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCC YYIDGNGRHRLTIAKCLGLDTKDVKVKLRKL EEECCCCCEEEEHHHHHCCCCHHHEEEEECC >Mature Secondary Structure MDFSQFGKKYGANSAALERMTTSQKLECLNLSNDIDKIKGYHFETVWLEEEFSEVEAKIN CCHHHHHHHHCCCHHHHHHHHHHHHHHEECCCCCHHHHCCCCEEEEEEHHHHHHHHHHCC LSELAGINKGDNYDTWLDSLETLKKQDHFTGFTSIQDFENILVNPNDIDELPRVILSNGK HHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCC YYIDGNGRHRLTIAKCLGLDTKDVKVKLRKL EEECCCCCEEEEHHHHHCCCCHHHEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA